Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017350

Physical Location & Seq

Genomic Coordinates Forward (+)

79604705 .. 79605624

Gene Structure 920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG578500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATGAGTCCCGAGAAGAAGCCGAGGAGAATCAACAAAAAACAAGAGAAAACAATTGCAGCTAGATTGAAACAGAGGTCTGCATTAAGGCCTAAACTGCCGGTGCTTAATTTGAAATCGGATCGGAATACTGTACCGGTGCCAAAGCAATGGTGCGAGAAAGGGGTAGATTTGGAGGGTGAAAGTGAAATCGAGAAGCCACCTTATCAGCTTCCTAGTTACATTGCTGCAACTGGAATCGAGAAAATTAGACAGGCGTGGATTGAGAAAGAAGATAGTAACAAGTTGGGGGCAATGGATATTGATTATCAGGTACTTTATGATGCCTTTTTCAAGTACCAGACTAAGCCAAAGCTCACAGCACTTGGTGATCTGTACTATGAAGGAAAAGAGTTTAATCAGGTAAGCTTGAGGGATCAGATGAAAGACTGCGGGTTCCGAGAGCCAGTTGGTCATGAGACAAAGCATTGGGGTGATTTGGAGGAAGAAGAGAGAGAAGATTTAGATGATGACATGGTTGCAGATAGTGAGAAGAAGAGGAAGCGTAGGATGAAGGAAAAGGAAGGCAAATACAACAAGAAGAAGGATTTCATGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

199

Amino Acids

23.44

Weight (kDa)

8.74

Isoelectric Point (pI)

56.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF382	PF04037	29 - 131	6.8e-31	Domain of unknown function (DUF382)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45270 FvH4_6g45280
rosa_chinensis	RchiOBHm_Chr2g0163031
rosa_laevigata	RLG00000021366
rosa_multiflora	Rmu_sc0022169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087610
rosa_rugosa	Rorug02G0499900
rosa_samantha	Rh2AG566200 Rh2BG578500 Rh2CG548400 Rh2DG588800 Rh2DG588900
rosa_wichuraiana	Rw2G046860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	139
AciI	CCGC	1 cut(s)	432
AclWI	GGATC	2 cut(s)	129, 423
AdeI	CACNNNGTG	1 cut(s)	368
AfaI	GTAC	4 cut(s)	135, 315, 338, 377
AgeI	ACCGGT	1 cut(s)	136
AgsI	TTSAA	3 cut(s)	70, 115, 334
AluBI	AGCT	4 cut(s)	62, 211, 355, 408
AluI	AGCT	4 cut(s)	62, 211, 355, 408
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	2 cut(s)	129, 423
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	2 cut(s)	59, 227
AsiGI	ACCGGT	1 cut(s)	136
Asp700I	GAANNNNTTC	1 cut(s)	587
AsuHPI	GGTGA	3 cut(s)	191, 380, 485
AvaI	CYCGRG	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	71, 214
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	2 cut(s)	63, 216
BisI	GCNGC	2 cut(s)	60, 228
BlsI	GCNGC	2 cut(s)	61, 229
BmeT110I	CYCGRG	1 cut(s)	11
BmiI	GGNNCC	2 cut(s)	141, 437
BmsI	GCATC	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	23
BsaWI	WCCGGW	1 cut(s)	136
Bse118I	RCCGGY	2 cut(s)	100, 136
Bse1I	ACTGG	2 cut(s)	238, 446
Bse3DI	GCAATG	3 cut(s)	155, 222, 300
BseDI	CCNNGG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	555
BseMI	GCAATG	3 cut(s)	155, 222, 300
BseNI	ACTGG	2 cut(s)	238, 446
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	71, 214
BshFI	GGCC	1 cut(s)	91
BshNI	GGYRCC	1 cut(s)	139
BshTI	ACCGGT	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	101, 137
BsmAI	GTCTC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	91
BsoBI	CYCGRG	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	121, 370, 415
BspACI	CCGC	1 cut(s)	432
BspANI	GGCC	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	141, 437
BspPI	GGATC	2 cut(s)	129, 423
BspT107I	GGYRCC	1 cut(s)	139
BsrDI	GCAATG	3 cut(s)	155, 222, 300
BsrFI	RCCGGY	2 cut(s)	100, 136
BsrI	ACTGG	2 cut(s)	238, 446
BssAI	RCCGGY	2 cut(s)	100, 136
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	3 cut(s)	121, 370, 415
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	2 cut(s)	483, 530
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	555
BstKTI	GATC	3 cut(s)	124, 373, 418
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	3 cut(s)	121, 370, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	71, 214
BstXI	CCANNNNNNTGG	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	555
CciI	TCATGA	1 cut(s)	454
Cfr10I	RCCGGY	2 cut(s)	100, 136
Csp6I	GTAC	4 cut(s)	134, 314, 337, 376
CspAI	ACCGGT	1 cut(s)	136
CviAII	CATG	3 cut(s)	455, 514, 592
CviJI	RGCY	9 cut(s)	22, 62, 91, 199, 211, 349, 355, 408, 445
CviKI_1	RGCY	9 cut(s)	22, 62, 91, 199, 211, 349, 355, 408, 445
CviQI	GTAC	4 cut(s)	134, 314, 337, 376
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	3 cut(s)	123, 372, 417
DpnII	GATC	3 cut(s)	121, 370, 415
DraIII	CACNNNGTG	1 cut(s)	368
Eam1104I	CTCTTC	2 cut(s)	483, 530
EarI	CTCTTC	2 cut(s)	483, 530
Eco147I	AGGCCT	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	11
FaeI	CATG	3 cut(s)	458, 517, 595
FaiI	YATR	5 cut(s)	321, 381, 456, 515, 593
FatI	CATG	3 cut(s)	454, 513, 591
FauI	CCCGC	1 cut(s)	425
Fnu4HI	GCNGC	2 cut(s)	60, 228
FokI	GGATG	1 cut(s)	562
Fsp4HI	GCNGC	2 cut(s)	60, 228
FspBI	CTAG	2 cut(s)	63, 216
GluI	GCNGC	2 cut(s)	60, 228
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	2 cut(s)	101, 137
Hin1II	CATG	3 cut(s)	458, 517, 595
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	3 cut(s)	7, 30, 237
HpaII	CCGG	2 cut(s)	101, 137
HphI	GGTGA	3 cut(s)	191, 380, 485
Hpy188I	TCNGA	4 cut(s)	121, 126, 420, 440
Hpy188III	TCNNGA	4 cut(s)	11, 193, 241, 455
HpyAV	CCTTC	4 cut(s)	377, 547, 557, 577
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	4 cut(s)	59, 83, 230, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	3 cut(s)	458, 517, 595
Kzo9I	GATC	3 cut(s)	121, 370, 415
LpnPI	CCDG	8 cut(s)	114, 150, 219, 239, 296, 353, 386, 459
Lsp1109I	GCAGC	2 cut(s)	71, 214
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	63, 216
MaeIII	GTNAC	2 cut(s)	218, 278
MalI	GATC	3 cut(s)	123, 372, 417
MboI	GATC	3 cut(s)	121, 370, 415
MboII	GAAGA	8 cut(s)	28, 284, 497, 500, 509, 544, 547, 592
MfeI	CAATTG	1 cut(s)	54
MluCI	AATT	3 cut(s)	54, 109, 246
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	6 cut(s)	18, 69, 169, 405, 475, 531
MroXI	GAANNNNTTC	1 cut(s)	587
MseI	TTAA	3 cut(s)	86, 108, 396
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	2 cut(s)	101, 137
MunI	CAATTG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeII	GATC	3 cut(s)	121, 370, 415
NlaIII	CATG	3 cut(s)	458, 517, 595
NlaIV	GGNNCC	2 cut(s)	141, 437
NmeAIII	GCCGAG	1 cut(s)	48
PagI	TCATGA	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	587
PfeI	GAWTC	2 cut(s)	30, 237
PinAI	ACCGGT	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	61, 229
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	141, 437
RsaI	GTAC	4 cut(s)	135, 315, 338, 377
RsaNI	GTAC	4 cut(s)	134, 314, 337, 376
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	3 cut(s)	86, 108, 396
SatI	GCNGC	2 cut(s)	60, 228
Sau3AI	GATC	3 cut(s)	121, 370, 415
SchI	GAGTC	1 cut(s)	16
SetI	ASST	8 cut(s)	64, 80, 205, 213, 315, 357, 405, 410
SfaNI	GCATC	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
Sse9I	AATT	3 cut(s)	54, 109, 246
SseBI	AGGCCT	1 cut(s)	91
SsiI	CCGC	1 cut(s)	432
SspMI	CTAG	2 cut(s)	63, 216
StuI	AGGCCT	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	192, 240
TasI	AATT	3 cut(s)	54, 109, 246
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	2 cut(s)	30, 237
Tru1I	TTAA	3 cut(s)	86, 108, 396
Tru9I	TTAA	3 cut(s)	86, 108, 396
TseI	GCWGC	2 cut(s)	59, 227
TspDTI	ATGAA	4 cut(s)	396, 437, 566, 580
XmnI	GAANNNNTTC	1 cut(s)	587
XspI	CTAG	2 cut(s)	63, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.