Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022169.1

Orthogroup ID

OG0017350

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 835

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022169.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgagtgacgagacaatcttgcaccagcctgcagcgagccacggtgatgatgatgttgagaaactgagaaattttttcgaaaagttcatgttggaggaaggggttggtgttgaggagttgagaattcttttcgaaaaactcatgttcagcaatgaaggagcgggtgttgacgagttgagaaaatgtttagaagaattcatgttcaaggaagcagcggctagattgaaacagaggtctgcattaaggcctaaactgccggtgcttaatttgaaatcggatcggaatactgtaccggtgccaaagcaatggtgcgagaaaggggtagatttggagggtgaaagtggaatcgagaagccaccttatcagcttcctagttacattgctgcaactggaatcgagaaaattagacaggcgtggattgagaaagaagatagtaacaagttgggggcaatggatattgattatcaggtactttatgatgcctttttcaagtaccagactaagccaaagctcacagcacttggtgatctgtactatgaaggaaaagagtttaatcaggtaagcttgagggatcagatgaaagactgcgggctccgagagccagttgatcatgagacaaagcattggggtgatttggaggaagaagagagagaagatttagatgatgacatggttgcagatagtgagaagaagaggaagcgtaagatgaaggaaaaggaaggcaaatacaacaagaagaaggatttcatgttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

251

Amino Acids

29.29

Weight (kDa)

5.11

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45270 FvH4_6g45280
rosa_chinensis	RchiOBHm_Chr2g0163031
rosa_laevigata	RLG00000021366
rosa_multiflora	Rmu_sc0022169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087610
rosa_rugosa	Rorug02G0499900
rosa_samantha	Rh2AG566200 Rh2BG578500 Rh2CG548400 Rh2DG588800 Rh2DG588900
rosa_wichuraiana	Rw2G046860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AccBSI	CCGCTC	1 cut(s)	161
AciI	CCGC	3 cut(s)	161, 215, 588
AclWI	GGATC	2 cut(s)	285, 579
AcsI	RAATTY	3 cut(s)	70, 123, 194
AdeI	CACNNNGTG	1 cut(s)	524
AfaI	GTAC	4 cut(s)	291, 471, 494, 533
AgeI	ACCGGT	1 cut(s)	292
AgsI	TTSAA	4 cut(s)	205, 226, 271, 490
AloI	GAACNNNNNNTCC	1 cut(s)	734
AluBI	AGCT	3 cut(s)	367, 511, 564
AluI	AGCT	3 cut(s)	367, 511, 564
Alw26I	GTCTC	2 cut(s)	5, 608
AlwI	GGATC	2 cut(s)	285, 579
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	3 cut(s)	32, 212, 383
ApoI	RAATTY	3 cut(s)	70, 123, 194
AsiGI	ACCGGT	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	743
AsuHPI	GGTGA	4 cut(s)	56, 347, 536, 641
AsuII	TTCGAA	2 cut(s)	78, 132
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	594
BbvI	GCAGC	3 cut(s)	44, 224, 370
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	2 cut(s)	5, 608
BfaI	CTAG	2 cut(s)	219, 372
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	4 cut(s)	33, 213, 216, 384
BlsI	GCNGC	4 cut(s)	34, 214, 217, 385
BmiI	GGNNCC	2 cut(s)	297, 593
BmsI	GCATC	1 cut(s)	469
Bpu14I	TTCGAA	2 cut(s)	78, 132
BpuEI	CTTGAG	1 cut(s)	586
BsaJI	CCNNGG	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bse118I	RCCGGY	2 cut(s)	256, 292
Bse1I	ACTGG	2 cut(s)	394, 602
Bse3DI	GCAATG	4 cut(s)	157, 311, 378, 456
BseDI	CCNNGG	1 cut(s)	40
BseMI	GCAATG	4 cut(s)	157, 311, 378, 456
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	2 cut(s)	394, 602
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	3 cut(s)	44, 224, 370
BshFI	GGCC	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	295
BshTI	ACCGGT	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	257, 293
BsmAI	GTCTC	2 cut(s)	5, 608
BsnI	GGCC	1 cut(s)	247
Bsp119I	TTCGAA	2 cut(s)	78, 132
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp143I	GATC	4 cut(s)	277, 526, 571, 607
BspACI	CCGC	3 cut(s)	161, 215, 588
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	297, 593
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	2 cut(s)	285, 579
BspT104I	TTCGAA	2 cut(s)	78, 132
BspT107I	GGYRCC	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	161
BsrDI	GCAATG	4 cut(s)	157, 311, 378, 456
BsrFI	RCCGGY	2 cut(s)	256, 292
BsrI	ACTGG	2 cut(s)	394, 602
BssAI	RCCGGY	2 cut(s)	256, 292
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	4 cut(s)	277, 526, 571, 607
Bst4CI	ACNGT	2 cut(s)	44, 289
Bst6I	CTCTTC	2 cut(s)	639, 686
BstBI	TTCGAA	2 cut(s)	78, 132
BstC8I	GCNNGC	3 cut(s)	30, 37, 590
BstDEI	CTNAG	2 cut(s)	65, 501
BstDSI	CCRYGG	1 cut(s)	40
BstKTI	GATC	4 cut(s)	280, 529, 574, 610
BstMAI	GTCTC	2 cut(s)	5, 608
BstMBI	GATC	4 cut(s)	277, 526, 571, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 598
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	3 cut(s)	44, 224, 370
BstXI	CCANNNNNNTGG	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	40
Cac8I	GCNNGC	3 cut(s)	30, 37, 590
CciI	TCATGA	1 cut(s)	610
Cfr10I	RCCGGY	2 cut(s)	256, 292
Csp6I	GTAC	4 cut(s)	290, 470, 493, 532
CspAI	ACCGGT	1 cut(s)	292
CviAII	CATG	6 cut(s)	88, 142, 199, 611, 670, 748
CviQI	GTAC	4 cut(s)	290, 470, 493, 532
DdeI	CTNAG	2 cut(s)	65, 501
DpnI	GATC	4 cut(s)	279, 528, 573, 609
DpnII	GATC	4 cut(s)	277, 526, 571, 607
DraIII	CACNNNGTG	1 cut(s)	524
Eam1104I	CTCTTC	2 cut(s)	639, 686
EarI	CTCTTC	2 cut(s)	639, 686
Eco147I	AGGCCT	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	594
EcoRI	GAATTC	2 cut(s)	123, 194
EcoT38I	GRGCYC	1 cut(s)	594
FaeI	CATG	6 cut(s)	91, 145, 202, 614, 673, 751
FaiI	YATR	8 cut(s)	89, 143, 200, 477, 537, 612, 671, 749
FatI	CATG	6 cut(s)	87, 141, 198, 610, 669, 747
FauI	CCCGC	2 cut(s)	154, 581
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	4 cut(s)	33, 213, 216, 384
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	4 cut(s)	33, 213, 216, 384
FspBI	CTAG	2 cut(s)	219, 372
GluI	GCNGC	4 cut(s)	33, 213, 216, 384
HaeIII	GGCC	1 cut(s)	247
HapII	CCGG	2 cut(s)	257, 293
Hin1II	CATG	6 cut(s)	91, 145, 202, 614, 673, 751
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	562
HinfI	GANTC	2 cut(s)	345, 393
HpaII	CCGG	2 cut(s)	257, 293
HphI	GGTGA	4 cut(s)	56, 347, 536, 641
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	4 cut(s)	277, 282, 576, 596
Hpy188III	TCNNGA	3 cut(s)	349, 397, 611
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	6 cut(s)	92, 149, 533, 703, 713, 733
HpyCH4III	ACNGT	2 cut(s)	44, 289
HpyCH4V	TGCA	5 cut(s)	22, 32, 239, 386, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 598
HpyF3I	CTNAG	2 cut(s)	65, 501
Hsp92II	CATG	6 cut(s)	91, 145, 202, 614, 673, 751
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	4 cut(s)	277, 526, 571, 607
LmnI	GCTCC	2 cut(s)	158, 597
Lsp1109I	GCAGC	3 cut(s)	44, 224, 370
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	219, 372
MaeIII	GTNAC	3 cut(s)	5, 374, 434
MalI	GATC	4 cut(s)	279, 528, 573, 609
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	4 cut(s)	277, 526, 571, 607
MboII	GAAGA	8 cut(s)	203, 440, 653, 656, 665, 700, 703, 748
MhlI	GDGCHC	1 cut(s)	594
MluCI	AATT	5 cut(s)	70, 123, 194, 265, 402
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	7 cut(s)	88, 106, 225, 325, 561, 631, 687
MroXI	GAANNNNTTC	1 cut(s)	743
MseI	TTAA	3 cut(s)	242, 264, 552
MslI	CAYNNNNRTG	2 cut(s)	45, 627
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	257, 293
MwoI	GCNNNNNNNGC	2 cut(s)	253, 598
NdeII	GATC	4 cut(s)	277, 526, 571, 607
NlaIII	CATG	6 cut(s)	91, 145, 202, 614, 673, 751
NlaIV	GGNNCC	2 cut(s)	297, 593
NmuCI	GTSAC	1 cut(s)	5
NspV	TTCGAA	2 cut(s)	78, 132
PagI	TCATGA	1 cut(s)	610
PceI	AGGCCT	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	743
PfeI	GAWTC	2 cut(s)	345, 393
PinAI	ACCGGT	1 cut(s)	292
PkrI	GCNGC	4 cut(s)	34, 214, 217, 385
PspN4I	GGNNCC	2 cut(s)	297, 593
PstI	CTGCAG	1 cut(s)	34
RsaI	GTAC	4 cut(s)	291, 471, 494, 533
RsaNI	GTAC	4 cut(s)	290, 470, 493, 532
RseI	CAYNNNNRTG	2 cut(s)	45, 627
SaqAI	TTAA	3 cut(s)	242, 264, 552
SatI	GCNGC	4 cut(s)	33, 213, 216, 384
Sau3AI	GATC	4 cut(s)	277, 526, 571, 607
SduI	GDGCHC	1 cut(s)	594
SetI	ASST	7 cut(s)	236, 361, 369, 471, 513, 561, 566
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	1 cut(s)	30
SfuI	TTCGAA	2 cut(s)	78, 132
SmiMI	CAYNNNNRTG	2 cut(s)	45, 627
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
Sse9I	AATT	5 cut(s)	70, 123, 194, 265, 402
SseBI	AGGCCT	1 cut(s)	247
SsiI	CCGC	3 cut(s)	161, 215, 588
SspMI	CTAG	2 cut(s)	219, 372
StuI	AGGCCT	1 cut(s)	247
TaaI	ACNGT	2 cut(s)	44, 289
TaqI	TCGA	4 cut(s)	78, 132, 348, 396
TasI	AATT	5 cut(s)	70, 123, 194, 265, 402
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	2 cut(s)	345, 393
Tru1I	TTAA	3 cut(s)	242, 264, 552
Tru9I	TTAA	3 cut(s)	242, 264, 552
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	3 cut(s)	32, 212, 383
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	7 cut(s)	76, 168, 187, 552, 593, 722, 736
XapI	RAATTY	3 cut(s)	70, 123, 194
XmnI	GAANNNNTTC	1 cut(s)	743
XspI	CTAG	2 cut(s)	219, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.