Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0017350

Physical Location & Seq

Genomic Coordinates Forward (+)

82185381 .. 82197157

Gene Structure 11777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG588900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGCAGCCAAAGATGGGCAAGATGGACATTGATTACCGGGTACTTCATGATGCCTTTTTGAAGCATCAGGTAAAGCCAAAGCTCACAACAGTTGGTGATCTGTACTACGAAGGGAAAGAGTTTGATCAGGTGACACTGATGGATCAGATGAAGCCGGGTGCCATGTTGTCACATGAACTAAAAGAAGCTCTTGATTCTCCGCTCTATCTAAGCTATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

73

Amino Acids

8.49

Weight (kDa)

5.82

Isoelectric Point (pI)

15.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF382	PF04037	1 - 40	1.6e-15	Domain of unknown function (DUF382)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45270 FvH4_6g45280
rosa_chinensis	RchiOBHm_Chr2g0163031
rosa_laevigata	RLG00000021366
rosa_multiflora	Rmu_sc0022169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087610
rosa_rugosa	Rorug02G0499900
rosa_samantha	Rh2AG566200 Rh2BG578500 Rh2CG548400 Rh2DG588800 Rh2DG588900
rosa_wichuraiana	Rw2G046860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	202
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	1 cut(s)	150
AfaI	GTAC	2 cut(s)	42, 104
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	3 cut(s)	82, 188, 213
AluI	AGCT	3 cut(s)	82, 188, 213
AlwI	GGATC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	38, 156
AsuHPI	GGTGA	2 cut(s)	107, 142
BanI	GGYRCC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	3 cut(s)	7, 16, 133
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	2 cut(s)	38, 156
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	2 cut(s)	38, 156
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	2 cut(s)	38, 156
BmsI	GCATC	2 cut(s)	40, 73
BpuMI	CCSGG	2 cut(s)	38, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	37, 155
BslI	CCNNNNNNNGG	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	97, 124, 142
BspACI	CCGC	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	202
BssMI	GATC	3 cut(s)	97, 124, 142
Bst4CI	ACNGT	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	209
BstKTI	GATC	3 cut(s)	100, 127, 145
BstMBI	GATC	3 cut(s)	97, 124, 142
BstSCI	CCNGG	2 cut(s)	36, 154
BstV1I	GCAGC	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	134
CciI	TCATGA	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	41, 103
CviAII	CATG	3 cut(s)	47, 163, 173
CviJI	RGCY	6 cut(s)	7, 76, 82, 154, 188, 213
CviKI_1	RGCY	6 cut(s)	7, 76, 82, 154, 188, 213
CviQI	GTAC	2 cut(s)	41, 103
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	3 cut(s)	99, 126, 144
DpnII	GATC	3 cut(s)	97, 124, 142
FaeI	CATG	3 cut(s)	50, 166, 176
FaiI	YATR	4 cut(s)	48, 164, 174, 216
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FatI	CATG	3 cut(s)	46, 162, 172
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HapII	CCGG	2 cut(s)	37, 155
Hin1II	CATG	3 cut(s)	50, 166, 176
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	2 cut(s)	37, 155
HphI	GGTGA	2 cut(s)	107, 142
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	47, 191
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	209
Hsp92II	CATG	3 cut(s)	50, 166, 176
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	97, 124, 142
LpnPI	CCDG	4 cut(s)	50, 53, 113, 168
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	2 cut(s)	40, 73
MaeIII	GTNAC	2 cut(s)	130, 168
MalI	GATC	3 cut(s)	99, 126, 144
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	3 cut(s)	97, 124, 142
MspI	CCGG	2 cut(s)	37, 155
MspR9I	CCNGG	2 cut(s)	38, 156
NciI	CCSGG	2 cut(s)	38, 156
NdeII	GATC	3 cut(s)	97, 124, 142
NlaIII	CATG	3 cut(s)	50, 166, 176
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	2 cut(s)	130, 168
PagI	TCATGA	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	160
RsaI	GTAC	2 cut(s)	42, 104
RsaNI	GTAC	2 cut(s)	41, 103
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	97, 124, 142
ScrFI	CCNGG	2 cut(s)	38, 156
SetI	ASST	5 cut(s)	72, 84, 132, 190, 215
SfaNI	GCATC	2 cut(s)	40, 73
SsiI	CCGC	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	36, 154
TaaI	ACNGT	1 cut(s)	91
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	194
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	2 cut(s)	130, 168
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	2 cut(s)	130, 168
TspDTI	ATGAA	3 cut(s)	35, 164, 189
TspRI	CASTG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.