Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017350

Physical Location & Seq

Genomic Coordinates Forward (+)

72848289 .. 72849207

Gene Structure 919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG548400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAGTGACGAGACAATCTTGCACCAGCCTGCAGCGAGCCACGGTGATGATGATGTTGAGAAACTGAGAAAATTTTTCGAAAAGTTCATGTTGGAGGAAGGGGTTGGTGTTGAGGAGTTGAGAATTCTTTTCGAAAAACTCATGTTCAGCAATGAAGGAGCGGGTGTTGACGAGTTGAGAAAATGTTTAGAAGAATTCATGTTCAAGGAAGCAGCGGGTGTTGAGGAGAAAAAGGAAGATGATGAGTCCCGAGAAGAAGCCGAGGAGAATCAACAAAAACAAGAGAAAACAATTGCAGCTAGATTGAAACAGAGGTCTGCATTAAGGCCTAAACTGCCGGTGCTTAATTTGAAATTGGATCGGAATACTGTACCGGTGCCAAAGCAATGGTGCGAGAAAGGGGTAGATTTGGAGGGTGAAAGTGGAATCGAGAAGCCACCTTATCAGCTTCCTAGTTACATTGCTGCAACTGGAATCGAGAAAATTAGACAGGCGTGGATTGAGAAAGAAGATAGTAACAAGTTGGGGGCAATGGATATTGATTATCAGGTACTTTATGATGCCTTTTTCAAGTACCAGACTAAGCCAAAGCTCACAGCACTTGGTGATCTGTACTATGAAGGAAAAGAGTTTAATCAGGTAAGCTTGAGGGATCAGATGAAAGACTGCGGGCTCCGAGAGCCAGTTGATCATGAGACAAAGCATTGGGGTGATTTGGAGGAAGAAGAGAGAGAAGATTTAGATGATGACATGGTTGCAGATAGTGAGAAGAAGAGGAAGCGTAAGATGAAGGAAAAGGAAGGCAAATACAACAAGAAGAAGGATTTCATGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

278

Amino Acids

32.49

Weight (kDa)

4.96

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF382	PF04037	108 - 210	1.7e-30	Domain of unknown function (DUF382)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45270 FvH4_6g45280
rosa_chinensis	RchiOBHm_Chr2g0163031
rosa_laevigata	RLG00000021366
rosa_multiflora	Rmu_sc0022169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087610
rosa_rugosa	Rorug02G0499900
rosa_samantha	Rh2AG566200 Rh2BG578500 Rh2CG548400 Rh2DG588800 Rh2DG588900
rosa_wichuraiana	Rw2G046860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AccBSI	CCGCTC	1 cut(s)	161
AciI	CCGC	3 cut(s)	161, 215, 669
AclWI	GGATC	2 cut(s)	366, 660
AcsI	RAATTY	3 cut(s)	71, 123, 194
AdeI	CACNNNGTG	1 cut(s)	605
AfaI	GTAC	4 cut(s)	372, 552, 575, 614
AgeI	ACCGGT	1 cut(s)	373
AgsI	TTSAA	4 cut(s)	205, 307, 352, 571
AloI	GAACNNNNNNTCC	1 cut(s)	815
AluBI	AGCT	4 cut(s)	299, 448, 592, 645
AluI	AGCT	4 cut(s)	299, 448, 592, 645
Alw26I	GTCTC	2 cut(s)	5, 689
AlwI	GGATC	2 cut(s)	366, 660
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	4 cut(s)	32, 212, 296, 464
ApoI	RAATTY	3 cut(s)	71, 123, 194
AsiGI	ACCGGT	1 cut(s)	373
Asp700I	GAANNNNTTC	1 cut(s)	824
AsuHPI	GGTGA	4 cut(s)	56, 428, 617, 722
AsuII	TTCGAA	2 cut(s)	78, 132
AvaI	CYCGRG	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	675
BbvI	GCAGC	4 cut(s)	44, 224, 308, 451
BclI	TGATCA	1 cut(s)	688
BcoDI	GTCTC	2 cut(s)	5, 689
BfaI	CTAG	2 cut(s)	300, 453
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	4 cut(s)	33, 213, 297, 465
BlsI	GCNGC	4 cut(s)	34, 214, 298, 466
BmeT110I	CYCGRG	1 cut(s)	249
BmiI	GGNNCC	2 cut(s)	378, 674
BmsI	GCATC	1 cut(s)	550
Bpu14I	TTCGAA	2 cut(s)	78, 132
BpuEI	CTTGAG	1 cut(s)	667
BsaJI	CCNNGG	2 cut(s)	40, 261
BsaWI	WCCGGW	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bse118I	RCCGGY	2 cut(s)	337, 373
Bse1I	ACTGG	2 cut(s)	475, 683
Bse3DI	GCAATG	4 cut(s)	157, 392, 459, 537
BseDI	CCNNGG	2 cut(s)	40, 261
BseMI	GCAATG	4 cut(s)	157, 392, 459, 537
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	2 cut(s)	475, 683
BseRI	GAGGAG	3 cut(s)	128, 239, 278
BseXI	GCAGC	4 cut(s)	44, 224, 308, 451
BshFI	GGCC	1 cut(s)	328
BshNI	GGYRCC	1 cut(s)	376
BshTI	ACCGGT	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	338, 374
BslFI	GGGAC	1 cut(s)	232
BsmAI	GTCTC	2 cut(s)	5, 689
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	328
BsoBI	CYCGRG	1 cut(s)	249
Bsp119I	TTCGAA	2 cut(s)	78, 132
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp143I	GATC	4 cut(s)	358, 607, 652, 688
BspACI	CCGC	3 cut(s)	161, 215, 669
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	2 cut(s)	378, 674
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	2 cut(s)	366, 660
BspT104I	TTCGAA	2 cut(s)	78, 132
BspT107I	GGYRCC	1 cut(s)	376
BsrBI	CCGCTC	1 cut(s)	161
BsrDI	GCAATG	4 cut(s)	157, 392, 459, 537
BsrFI	RCCGGY	2 cut(s)	337, 373
BsrI	ACTGG	2 cut(s)	475, 683
BssAI	RCCGGY	2 cut(s)	337, 373
BssECI	CCNNGG	2 cut(s)	40, 261
BssMI	GATC	4 cut(s)	358, 607, 652, 688
Bst4CI	ACNGT	2 cut(s)	44, 370
Bst6I	CTCTTC	2 cut(s)	720, 767
BstBI	TTCGAA	2 cut(s)	78, 132
BstC8I	GCNNGC	3 cut(s)	30, 37, 671
BstDEI	CTNAG	2 cut(s)	65, 582
BstDSI	CCRYGG	1 cut(s)	40
BstKTI	GATC	4 cut(s)	361, 610, 655, 691
BstMAI	GTCTC	2 cut(s)	5, 689
BstMBI	GATC	4 cut(s)	358, 607, 652, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 679
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	4 cut(s)	44, 224, 308, 451
BstXI	CCANNNNNNTGG	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	328
BtgI	CCRYGG	1 cut(s)	40
Cac8I	GCNNGC	3 cut(s)	30, 37, 671
CciI	TCATGA	1 cut(s)	691
Cfr10I	RCCGGY	2 cut(s)	337, 373
Csp6I	GTAC	4 cut(s)	371, 551, 574, 613
CspAI	ACCGGT	1 cut(s)	373
CviAII	CATG	6 cut(s)	88, 142, 199, 692, 751, 829
CviQI	GTAC	4 cut(s)	371, 551, 574, 613
DdeI	CTNAG	2 cut(s)	65, 582
DpnI	GATC	4 cut(s)	360, 609, 654, 690
DpnII	GATC	4 cut(s)	358, 607, 652, 688
DraIII	CACNNNGTG	1 cut(s)	605
Eam1104I	CTCTTC	2 cut(s)	720, 767
EarI	CTCTTC	2 cut(s)	720, 767
Eco147I	AGGCCT	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	675
Eco88I	CYCGRG	1 cut(s)	249
EcoRI	GAATTC	2 cut(s)	123, 194
EcoT38I	GRGCYC	1 cut(s)	675
FaeI	CATG	6 cut(s)	91, 145, 202, 695, 754, 832
FaiI	YATR	8 cut(s)	89, 143, 200, 558, 618, 693, 752, 830
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	6 cut(s)	87, 141, 198, 691, 750, 828
FauI	CCCGC	3 cut(s)	154, 208, 662
FbaI	TGATCA	1 cut(s)	688
Fnu4HI	GCNGC	4 cut(s)	33, 213, 297, 465
FriOI	GRGCYC	1 cut(s)	675
Fsp4HI	GCNGC	4 cut(s)	33, 213, 297, 465
FspBI	CTAG	2 cut(s)	300, 453
GluI	GCNGC	4 cut(s)	33, 213, 297, 465
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	2 cut(s)	338, 374
Hin1II	CATG	6 cut(s)	91, 145, 202, 695, 754, 832
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	4 cut(s)	245, 268, 426, 474
HpaII	CCGG	2 cut(s)	338, 374
HphI	GGTGA	4 cut(s)	56, 428, 617, 722
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	363, 657, 677
Hpy188III	TCNNGA	4 cut(s)	249, 430, 478, 692
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	6 cut(s)	92, 149, 614, 784, 794, 814
HpyCH4III	ACNGT	2 cut(s)	44, 370
HpyCH4V	TGCA	6 cut(s)	22, 32, 296, 320, 467, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 679
HpyF3I	CTNAG	2 cut(s)	65, 582
Hsp92II	CATG	6 cut(s)	91, 145, 202, 695, 754, 832
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	4 cut(s)	358, 607, 652, 688
LmnI	GCTCC	2 cut(s)	158, 678
Lsp1109I	GCAGC	4 cut(s)	44, 224, 308, 451
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	2 cut(s)	300, 453
MaeIII	GTNAC	3 cut(s)	5, 455, 515
MalI	GATC	4 cut(s)	360, 609, 654, 690
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	4 cut(s)	358, 607, 652, 688
MfeI	CAATTG	1 cut(s)	291
MhlI	GDGCHC	1 cut(s)	675
MluCI	AATT	7 cut(s)	71, 123, 194, 291, 346, 353, 483
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	9 cut(s)	88, 106, 217, 256, 306, 406, 642, 712, 768
MroXI	GAANNNNTTC	1 cut(s)	824
MseI	TTAA	3 cut(s)	323, 345, 633
MslI	CAYNNNNRTG	2 cut(s)	45, 708
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	338, 374
MunI	CAATTG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	334, 679
NdeII	GATC	4 cut(s)	358, 607, 652, 688
NlaIII	CATG	6 cut(s)	91, 145, 202, 695, 754, 832
NlaIV	GGNNCC	2 cut(s)	378, 674
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	5
NspV	TTCGAA	2 cut(s)	78, 132
PagI	TCATGA	1 cut(s)	691
PceI	AGGCCT	1 cut(s)	328
PdmI	GAANNNNTTC	1 cut(s)	824
PfeI	GAWTC	3 cut(s)	268, 426, 474
PinAI	ACCGGT	1 cut(s)	373
PkrI	GCNGC	4 cut(s)	34, 214, 298, 466
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	378, 674
PstI	CTGCAG	1 cut(s)	34
RsaI	GTAC	4 cut(s)	372, 552, 575, 614
RsaNI	GTAC	4 cut(s)	371, 551, 574, 613
RseI	CAYNNNNRTG	2 cut(s)	45, 708
SaqAI	TTAA	3 cut(s)	323, 345, 633
SatI	GCNGC	4 cut(s)	33, 213, 297, 465
Sau3AI	GATC	4 cut(s)	358, 607, 652, 688
SchI	GAGTC	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	675
SetI	ASST	8 cut(s)	301, 317, 442, 450, 552, 594, 642, 647
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	1 cut(s)	30
SfuI	TTCGAA	2 cut(s)	78, 132
SmiMI	CAYNNNNRTG	2 cut(s)	45, 708
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
Sse9I	AATT	7 cut(s)	71, 123, 194, 291, 346, 353, 483
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	3 cut(s)	161, 215, 669
SspMI	CTAG	2 cut(s)	300, 453
StuI	AGGCCT	1 cut(s)	328
TaaI	ACNGT	2 cut(s)	44, 370
TaqI	TCGA	4 cut(s)	78, 132, 429, 477
TasI	AATT	7 cut(s)	71, 123, 194, 291, 346, 353, 483
TatI	WGTACW	1 cut(s)	612
TfiI	GAWTC	3 cut(s)	268, 426, 474
Tru1I	TTAA	3 cut(s)	323, 345, 633
Tru9I	TTAA	3 cut(s)	323, 345, 633
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	4 cut(s)	32, 212, 296, 464
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	7 cut(s)	76, 168, 187, 633, 674, 803, 817
XapI	RAATTY	3 cut(s)	71, 123, 194
XmnI	GAANNNNTTC	1 cut(s)	824
XspI	CTAG	2 cut(s)	300, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.