Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0017350

Physical Location & Seq

Genomic Coordinates Forward (+)

63255746 .. 63256964

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0499900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAAGCAAAAGGTGGTGATCAGCCTCTCTGTGCACGACGAGAAGTCCCGATCCAAGGCAATGAAGACAGCAGTTGGAGTTGATGGGGTGGATTCAGCAAGTCTGCCACTGGACAAGGACCAAATTGAAGTAACAGGAAATGATGTTGATGTGGTTTTGCTCACAACACTTCTCAGAAAAAGTGTCAAGCGTGCTGACGTAGTCAGTGTGAGCCCTGTCAAAGAGGAGGAGAAGAAGAAGGAGGAGCAAATCATCGTCGGATGGCCTCAGAGTTATCCAGTTGCTTCATACCAGTGCCCGCCATATACGTACCAGTGCTATGAGCCAAGCCCCAGTTGCTCCATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

116

Amino Acids

12.83

Weight (kDa)

5.82

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017350)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45270 FvH4_6g45280
rosa_chinensis	RchiOBHm_Chr2g0163031
rosa_laevigata	RLG00000021366
rosa_multiflora	Rmu_sc0022169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087610
rosa_rugosa	Rorug02G0499900
rosa_samantha	Rh2AG566200 Rh2BG578500 Rh2CG548400 Rh2DG588800 Rh2DG588900
rosa_wichuraiana	Rw2G046860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	299
AclWI	GGATC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	128
AhdI	GACNNNNNGTC	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	36
Alw44I	GTGCAC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	1 cut(s)	263
ApaLI	GTGCAC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	2 cut(s)	36, 299
BanII	GRGCYC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	2 cut(s)	77, 255
BclI	TGATCA	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	118
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	327
BmuI	ACTGGG	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	5 cut(s)	114, 278, 292, 313, 333
Bse3DI	GCAATG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	187, 281
BseNI	ACTGG	5 cut(s)	114, 278, 292, 313, 333
BseRI	GAGGAG	3 cut(s)	239, 242, 257
BseSI	GKGCMC	2 cut(s)	36, 299
BshFI	GGCC	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	265
Bsp1286I	GDGCHC	3 cut(s)	36, 215, 299
Bsp143I	GATC	2 cut(s)	18, 50
BspACI	CCGC	1 cut(s)	299
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	2 cut(s)	186, 280
BspPI	GGATC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	5 cut(s)	114, 278, 292, 313, 333
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	18, 50
BssT1I	CCWWGG	1 cut(s)	54
BstBAI	YACGTR	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	192, 299
BstDEI	CTNAG	2 cut(s)	173, 267
BstF5I	GGATG	1 cut(s)	266
BstKTI	GATC	2 cut(s)	21, 53
BstMBI	GATC	2 cut(s)	18, 50
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstSLI	GKGCMC	2 cut(s)	36, 299
BstSNI	TACGTA	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	266
BtsIMutI	CAGTG	4 cut(s)	107, 211, 299, 320
Cac8I	GCNNGC	2 cut(s)	192, 299
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	310
CviJI	RGCY	5 cut(s)	24, 213, 265, 325, 330
CviKI_1	RGCY	5 cut(s)	24, 213, 265, 325, 330
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	2 cut(s)	173, 267
DpnI	GATC	2 cut(s)	20, 52
DpnII	GATC	2 cut(s)	18, 50
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco105I	TACGTA	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	54
FaiI	YATR	5 cut(s)	289, 304, 306, 321, 347
FaqI	GGGAC	1 cut(s)	31
FauI	CCCGC	1 cut(s)	306
FbaI	TGATCA	1 cut(s)	18
FokI	GGATG	1 cut(s)	273
FriOI	GRGCYC	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	176, 260, 270
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	2 cut(s)	41, 260
HpyAV	CCTTC	1 cut(s)	232
HpyCH4IV	ACGT	2 cut(s)	198, 308
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	2 cut(s)	173, 267
HpySE526I	ACGT	2 cut(s)	198, 308
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	18, 50
LmnI	GCTCC	2 cut(s)	244, 344
LpnPI	CCDG	7 cut(s)	95, 120, 228, 291, 305, 326, 346
MaeII	ACGT	2 cut(s)	198, 308
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	20, 52
MboI	GATC	2 cut(s)	18, 50
MboII	GAAGA	3 cut(s)	76, 244, 247
MhlI	GDGCHC	3 cut(s)	36, 215, 299
MluCI	AATT	1 cut(s)	123
MmeI	TCCRAC	2 cut(s)	55, 238
MnlI	CCTC	5 cut(s)	35, 217, 220, 235, 276
MslI	CAYNNNNRTG	1 cut(s)	292
MwoI	GCNNNNNNNGC	1 cut(s)	336
NdeII	GATC	2 cut(s)	18, 50
PfeI	GAWTC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	200
Ppu21I	YACGTR	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	292
Sau3AI	GATC	2 cut(s)	18, 50
Sau96I	GGNCC	1 cut(s)	118
SduI	GDGCHC	3 cut(s)	36, 215, 299
SetI	ASST	3 cut(s)	15, 201, 311
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	292
SnaBI	TACGTA	1 cut(s)	309
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	2 cut(s)	201, 311
TasI	AATT	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	4 cut(s)	114, 211, 299, 320
TspDTI	ATGAA	3 cut(s)	17, 77, 276
TspRI	CASTG	4 cut(s)	114, 211, 299, 320
Tth111I	GACNNNGTC	1 cut(s)	200
VneI	GTGCAC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.