Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015676

Physical Location & Seq

Genomic Coordinates Forward (+)

35271512 .. 35273446

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCTGAAGATTACTGCAAGCTTCGTACTAGGGTTTCTTTTTATGATGCATGGCTTAGGAGACTTCATTGCTCATGCTGATCATCAAGGTAAAGAAGGGCTATTAATGACTGGAACACATTCTGTATTTCCTGATGAAAAGGAACTAACTGATGAAATCTCAAAAAAGGCTGGGTCAAGGACCATAGGGATCGGAGGAAGGAAGATGGCGGCACAACAAGTAGTGCTGAGAAATGGAGAGCTTGCTCCTACTACTACGACAACTTCATCAAAGAATTCAGGAAAGGACAGTAATAAGGCTCCAAAGTACAACTTCCATGGAGGACATCAAACCATATTGAACCAAAAGGGTGAGATCAAAATAATAACAACTGCTGCCAGCAGTACTAGCAGTAACATTGGAATTCCTAGAGATGAGCCAAGAAAACACTCTCAAGTAGATGAAGAAACTAGACGGCTTCTTGAAGCAGAAAGAGAGATAGTAAATCTGATCCATAAAGATTATAAGGGATCCGCCGGACGGAGCATGGGTCGCCGCAAGCCACCCATAAACAACCATGAGCCACAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.86

Weight (kDa)

9.58

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46170 FvH4_6g46170
malus_domestica	MD09G1076400.v1.1 MD09G1076500.v1.1 MD17G1067000.v1.1
prunus_persica	Prupe.3G247600_v2.0.a1
rosa_laevigata	RLG00000021470
rosa_multiflora	Rmu_sc0000946.1_g000003 Rmu_ssc0000076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00086450
rosa_rugosa	Rorug02G0509500
rosa_samantha	Rh2AG577100 Rh2BG588200 Rh2CG559000 Rh2DG598800
rosa_wichuraiana	Rw2G047920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AciI	CCGC	3 cut(s)	209, 513, 535
AclWI	GGATC	4 cut(s)	197, 484, 504, 517
AcsI	RAATTY	2 cut(s)	274, 402
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	3 cut(s)	27, 308, 385
AfiI	CCNNNNNNNGG	1 cut(s)	519
AgsI	TTSAA	2 cut(s)	340, 464
AluBI	AGCT	2 cut(s)	21, 241
AluI	AGCT	2 cut(s)	21, 241
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	4 cut(s)	197, 484, 504, 517
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	2 cut(s)	274, 402
AseI	ATTAAT	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	509
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	199
BceAI	ACGGC	1 cut(s)	470
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	4 cut(s)	29, 387, 408, 450
BisI	GCNGC	3 cut(s)	210, 375, 535
BlsI	GCNGC	3 cut(s)	211, 376, 536
BmcAI	AGTACT	1 cut(s)	385
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	300, 511
BmsI	GCATC	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	514, 544
Bsc4I	CCNNNNNNNGG	1 cut(s)	519
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	519
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	519
BsmAI	GTCTC	1 cut(s)	54
Bsp143I	GATC	5 cut(s)	79, 189, 354, 489, 509
Bsp19I	CCATGG	1 cut(s)	316
BspACI	CCGC	3 cut(s)	209, 513, 535
BspCNI	CTCAG	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	300, 511
BspPI	GGATC	4 cut(s)	197, 484, 504, 517
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	5 cut(s)	79, 189, 354, 489, 509
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	1 cut(s)	290
BstC8I	GCNNGC	4 cut(s)	19, 243, 379, 539
BstDEI	CTNAG	2 cut(s)	55, 227
BstDSI	CCRYGG	1 cut(s)	316
BstKTI	GATC	5 cut(s)	82, 192, 357, 492, 512
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	5 cut(s)	79, 189, 354, 489, 509
BstMWI	GCNNNNNNNGC	2 cut(s)	387, 531
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
BtgI	CCRYGG	1 cut(s)	316
Cac8I	GCNNGC	4 cut(s)	19, 243, 379, 539
Cfr13I	GGNCC	1 cut(s)	180
Csp6I	GTAC	3 cut(s)	26, 307, 384
CviAII	CATG	5 cut(s)	50, 74, 317, 526, 557
CviQI	GTAC	3 cut(s)	26, 307, 384
DdeI	CTNAG	2 cut(s)	55, 227
DpnI	GATC	5 cut(s)	81, 191, 356, 491, 511
DpnII	GATC	5 cut(s)	79, 189, 354, 489, 509
EciI	GGCGGA	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	26
EcoRI	GAATTC	2 cut(s)	274, 402
EcoT14I	CCWWGG	1 cut(s)	316
EcoT22I	ATGCAT	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	5 cut(s)	53, 77, 320, 529, 560
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	5 cut(s)	49, 73, 316, 525, 556
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	210, 375, 535
Fsp4HI	GCNGC	3 cut(s)	210, 375, 535
FspBI	CTAG	4 cut(s)	29, 387, 408, 450
GluI	GCNGC	3 cut(s)	210, 375, 535
GsaI	CCCAGC	1 cut(s)	174
HapII	CCGG	1 cut(s)	516
Hin1II	CATG	5 cut(s)	53, 77, 320, 529, 560
HindIII	AAGCTT	1 cut(s)	19
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	1 cut(s)	362
Hpy188I	TCNGA	2 cut(s)	194, 489
Hpy188III	TCNNGA	3 cut(s)	131, 279, 461
HpyAV	CCTTC	2 cut(s)	89, 192
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	2 cut(s)	17, 49
HpyF10VI	GCNNNNNNNGC	2 cut(s)	387, 531
HpyF3I	CTNAG	2 cut(s)	55, 227
Hsp92II	CATG	5 cut(s)	53, 77, 320, 529, 560
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	79, 189, 354, 489, 509
LmnI	GCTCC	3 cut(s)	250, 304, 522
LpnPI	CCDG	6 cut(s)	96, 144, 156, 264, 391, 529
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	4 cut(s)	29, 387, 408, 450
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	5 cut(s)	81, 191, 356, 491, 511
MboI	GATC	5 cut(s)	79, 189, 354, 489, 509
MboII	GAAGA	3 cut(s)	19, 214, 455
MflI	RGATCY	1 cut(s)	509
MluCI	AATT	2 cut(s)	274, 402
MnlI	CCTC	2 cut(s)	188, 314
Mph1103I	ATGCAT	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	118
MseI	TTAA	1 cut(s)	104
MspI	CCGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	2 cut(s)	387, 531
NcoI	CCATGG	1 cut(s)	316
NdeII	GATC	5 cut(s)	79, 189, 354, 489, 509
NlaIII	CATG	5 cut(s)	53, 77, 320, 529, 560
NlaIV	GGNNCC	2 cut(s)	300, 511
NsiI	ATGCAT	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	118
PkrI	GCNGC	3 cut(s)	211, 376, 536
PshBI	ATTAAT	1 cut(s)	104
PsiI	TTATAA	1 cut(s)	504
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	300, 511
PspPI	GGNCC	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	509
RsaI	GTAC	3 cut(s)	27, 308, 385
RsaNI	GTAC	3 cut(s)	26, 307, 384
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	3 cut(s)	210, 375, 535
Sau3AI	GATC	5 cut(s)	79, 189, 354, 489, 509
Sau96I	GGNCC	1 cut(s)	180
ScaI	AGTACT	1 cut(s)	385
SetI	ASST	3 cut(s)	23, 91, 243
SfaNI	GCATC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse9I	AATT	2 cut(s)	274, 402
SsiI	CCGC	3 cut(s)	209, 513, 535
SspMI	CTAG	4 cut(s)	29, 387, 408, 450
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	290
TasI	AATT	2 cut(s)	274, 402
TatI	WGTACW	2 cut(s)	306, 383
TauI	GCSGC	2 cut(s)	212, 537
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	5 cut(s)	55, 150, 168, 255, 456
TspGWI	ACGGA	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	180
VspI	ATTAAT	1 cut(s)	104
XapI	RAATTY	2 cut(s)	274, 402
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	4 cut(s)	29, 387, 408, 450
ZrmI	AGTACT	1 cut(s)	385
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.