Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0015676

Physical Location & Seq

Genomic Coordinates Reverse (-)

5390596 .. 5391860

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1076400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGATAGGGCTTGGAGGAAGAAAAATGGTGGCACACAAAGTGTTTAGGAAGTTAGAGCCTGAAAGAGCAGTTGGGCCGAATAGAGATACCCGTAGTTCTACTACATCAACGAATTCAGGTAAGGAAAGTGCTGATGCTTGTGGAGAGACTACAAAGTATGATGAAACTGATGATCCTAAGTTGACAGAGGAAACAAGAAGGCTTCTTAAGGCAACAAGAGAGGCATTAAACCTGATGACTAAAGATTATCAGGGAAGAGATCGGCGCCGCAAACCGCCCATAAACAATCATGAGCCACAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

102

Amino Acids

11.49

Weight (kDa)

9.6

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46170 FvH4_6g46170
malus_domestica	MD09G1076400.v1.1 MD09G1076500.v1.1 MD17G1067000.v1.1
prunus_persica	Prupe.3G247600_v2.0.a1
rosa_laevigata	RLG00000021470
rosa_multiflora	Rmu_sc0000946.1_g000003 Rmu_ssc0000076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00086450
rosa_rugosa	Rorug02G0509500
rosa_samantha	Rh2AG577100 Rh2BG588200 Rh2CG559000 Rh2DG598800
rosa_wichuraiana	Rw2G047920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	264
AciI	CCGC	2 cut(s)	268, 275
AclWI	GGATC	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	112
AcyI	GRCGYC	1 cut(s)	265
AdeI	CACNNNGTG	1 cut(s)	40
AflII	CTTAAG	1 cut(s)	206
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	268
BfrI	CTTAAG	1 cut(s)	206
BisI	GCNGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	266
BmsI	GCATC	1 cut(s)	124
BsaHI	GRCGYC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	76
BshNI	GGYRCC	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	172, 259
BspACI	CCGC	2 cut(s)	268, 275
BspANI	GGCC	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	264
BspTI	CTTAAG	1 cut(s)	206
BssMI	GATC	2 cut(s)	172, 259
BssNI	GRCGYC	1 cut(s)	265
Bst6I	CTCTTC	1 cut(s)	250
BstACI	GRCGYC	1 cut(s)	265
BstAFI	CTTAAG	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	175, 262
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	172, 259
BsuRI	GGCC	1 cut(s)	76
CciI	TCATGA	1 cut(s)	289
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	74
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	5 cut(s)	10, 58, 76, 202, 295
CviKI_1	RGCY	5 cut(s)	10, 58, 76, 202, 295
DdeI	CTNAG	1 cut(s)	177
DinI	GGCGCC	1 cut(s)	266
DpnI	GATC	2 cut(s)	174, 261
DpnII	GATC	2 cut(s)	172, 259
DraIII	CACNNNGTG	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	112
EgeI	GGCGCC	1 cut(s)	266
EheI	GGCGCC	1 cut(s)	266
FaeI	CATG	1 cut(s)	293
FaiI	YATR	3 cut(s)	159, 281, 291
FatI	CATG	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	268
Fsp4HI	GCNGC	1 cut(s)	268
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	1 cut(s)	268
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	267
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	1 cut(s)	293
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	192
HpyF3I	CTNAG	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	1 cut(s)	293
HspAI	GCGC	1 cut(s)	265
KasI	GGCGCC	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	172, 259
LpnPI	CCDG	4 cut(s)	72, 102, 236, 245
LweI	GCATC	1 cut(s)	124
MalI	GATC	2 cut(s)	174, 261
MboI	GATC	2 cut(s)	172, 259
MboII	GAAGA	2 cut(s)	30, 267
MluCI	AATT	1 cut(s)	112
Mly113I	GGCGCC	1 cut(s)	265
MnlI	CCTC	3 cut(s)	8, 181, 214
MseI	TTAA	2 cut(s)	207, 227
MspCI	CTTAAG	1 cut(s)	206
NarI	GGCGCC	1 cut(s)	265
NdeII	GATC	2 cut(s)	172, 259
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	1 cut(s)	266
PagI	TCATGA	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	269
PluTI	GGCGCC	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	207, 227
SatI	GCNGC	1 cut(s)	268
Sau3AI	GATC	2 cut(s)	172, 259
Sau96I	GGNCC	1 cut(s)	74
SetI	ASST	2 cut(s)	121, 234
SfaNI	GCATC	1 cut(s)	124
SfoI	GGCGCC	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	2 cut(s)	268, 275
SspDI	GGCGCC	1 cut(s)	264
TasI	AATT	1 cut(s)	112
TauI	GCSGC	1 cut(s)	270
Tru1I	TTAA	2 cut(s)	207, 227
Tru9I	TTAA	2 cut(s)	207, 227
TspDTI	ATGAA	1 cut(s)	177
Vha464I	CTTAAG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.