Prupe.3G247600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015676
Physical Location & Seq
Forward (+)
23831718 .. 23833856
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G247600.1

Sequence Viewer

Length: 645 bp
ATGCTACAGCTTACAAGCTTCATACTAGGGCTTCTTTTTGTTATGCATGCACTAGGGCACTTTACTACTGCTGCACATGCTCATCAGGGTAAAGAAGAGCTTTCTATGACTGAGAAACCTGTAATACTCTCTGGTCATAAGGAACCAAATACGGATGGGGTTTCAATAGCTGGGTCTAGGATGATAGGGCTTGGAGGAAGAAAAATGGCGGCACACAAAGTGTTGAGGAAATTAGAGCCTGCAAGACCAGCTAGCCAGCTGAATGGAGAGACTACTTCATCAAAGAATTCAGGTAAGGACAGTAAAGCTTCAAGCAACTCCCATGGAAAACCTCAAAACATACTGAACCAGCAGGCCGATATCAAGATATTGGAGCCAACAACACTGAAGGCTGCTGCCAATAGTTTTGGAATTCCCAGAGTTCTTAAGCCAAAGCACTCTCAAGATTCCAAGACAAAGCAGCCAATTATCAGAGCTCATCAAAAGACTATTAATTATGATGATACTGATGATCATCATAAGTTGACAGATGAAGCAAGAAGGCTTCTTAAGGCAACAAGAGAGATAGTAAACCTGATGCATAAAGATTATCATGGAATGGGTCGCCGCAAGCCGCCCATAAACAATCATGAGCCACAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

23.66

Weight (kDa)

9.95

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 209, 607, 614
AcsI RAATTY 2 cut(s) 286, 411
AcuI CTGAAG 1 cut(s) 407
AdeI CACNNNGTG 1 cut(s) 220
AflII CTTAAG 2 cut(s) 425, 548
AgsI TTSAA 2 cut(s) 165, 312
AluBI AGCT 8 cut(s) 10, 18, 100, 170, 251, 259, 308, 476
AluI AGCT 8 cut(s) 10, 18, 100, 170, 251, 259, 308, 476
Alw21I GWGCWC 1 cut(s) 478
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 4 cut(s) 71, 392, 395, 460
ApoI RAATTY 2 cut(s) 286, 411
AseI ATTAAT 1 cut(s) 492
AsuNHI GCTAGC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 60
BanII GRGCYC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 478
BbvI GCAGC 4 cut(s) 58, 379, 382, 472
BccI CCATC 1 cut(s) 149
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 4 cut(s) 26, 53, 177, 252
BfmI CTRYAG 1 cut(s) 5
BfrI CTTAAG 2 cut(s) 425, 548
BisI GCNGC 7 cut(s) 72, 210, 393, 396, 461, 607, 614
BlsI GCNGC 7 cut(s) 73, 211, 394, 397, 462, 608, 615
BmiI GGNNCC 2 cut(s) 144, 375
BmsI GCATC 1 cut(s) 567
BmtI GCTAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 426
BsaBI GATNNNNATC 1 cut(s) 513
BsaJI CCNNGG 1 cut(s) 322
Bse8I GATNNNNATC 1 cut(s) 513
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 2 cut(s) 160, 186
BseJI GATNNNNATC 1 cut(s) 513
BseMII CTCAG 1 cut(s) 102
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 4 cut(s) 58, 379, 382, 472
BseYI CCCAGC 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 478
BsmAI GTCTC 1 cut(s) 263
BsnI GGCC 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 60, 478
Bsp143I GATC 1 cut(s) 511
Bsp19I CCATGG 1 cut(s) 322
BspACI CCGC 3 cut(s) 209, 607, 614
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 1 cut(s) 103
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 2 cut(s) 144, 375
BspOI GCTAGC 1 cut(s) 255
BspQI GCTCTTC 1 cut(s) 90
BspTI CTTAAG 2 cut(s) 425, 548
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 1 cut(s) 511
BssT1I CCWWGG 1 cut(s) 322
Bst4CI ACNGT 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 90
BstAFI CTTAAG 2 cut(s) 425, 548
BstC8I GCNNGC 6 cut(s) 48, 240, 253, 257, 354, 611
BstDEI CTNAG 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 322
BstF5I GGATG 2 cut(s) 160, 186
BstKTI GATC 1 cut(s) 514
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 511
BstMWI GCNNNNNNNGC 2 cut(s) 77, 248
BstNSI RCATGY 2 cut(s) 50, 80
BstSFI CTRYAG 1 cut(s) 5
BstSLI GKGCMC 1 cut(s) 60
BstV1I GCAGC 4 cut(s) 58, 379, 382, 472
BstXI CCANNNNNNTGG 1 cut(s) 263
BsuRI GGCC 1 cut(s) 356
BtgI CCRYGG 1 cut(s) 322
BtsCI GGATG 2 cut(s) 160, 186
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 6 cut(s) 48, 240, 253, 257, 354, 611
CciI TCATGA 1 cut(s) 628
CviAII CATG 5 cut(s) 47, 77, 323, 593, 629
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 513
DpnII GATC 1 cut(s) 511
DraIII CACNNNGTG 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 476
Eco130I CCWWGG 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 478
Eco32I GATATC 1 cut(s) 361
Eco53kI GAGCTC 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 407
EcoICRI GAGCTC 1 cut(s) 476
EcoRI GAATTC 2 cut(s) 286, 411
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 322
EcoT22I ATGCAT 2 cut(s) 48, 582
EcoT38I GRGCYC 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 5 cut(s) 50, 80, 326, 596, 632
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FatI CATG 5 cut(s) 46, 76, 322, 592, 628
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 7 cut(s) 72, 210, 393, 396, 461, 607, 614
FokI GGATG 2 cut(s) 167, 193
FriOI GRGCYC 1 cut(s) 478
Fsp4HI GCNGC 7 cut(s) 72, 210, 393, 396, 461, 607, 614
FspBI CTAG 4 cut(s) 26, 53, 177, 252
GluI GCNGC 7 cut(s) 72, 210, 393, 396, 461, 607, 614
GsaI CCCAGC 1 cut(s) 174
HaeIII GGCC 1 cut(s) 356
Hin1II CATG 5 cut(s) 50, 80, 326, 596, 632
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HindIII AAGCTT 2 cut(s) 16, 306
HinfI GANTC 1 cut(s) 446
Hpy166II GTNNAC 2 cut(s) 525, 571
Hpy188I TCNGA 1 cut(s) 473
Hpy188III TCNNGA 3 cut(s) 364, 443, 629
Hpy8I GTNNAC 2 cut(s) 525, 571
HpyAV CCTTC 2 cut(s) 382, 534
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4V TGCA 5 cut(s) 46, 50, 74, 242, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 248
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 5 cut(s) 50, 80, 326, 596, 632
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 1 cut(s) 511
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 373
Lsp1109I GCAGC 4 cut(s) 58, 379, 382, 472
LweI GCATC 1 cut(s) 567
MaeI CTAG 4 cut(s) 26, 53, 177, 252
MalI GATC 1 cut(s) 513
MboI GATC 1 cut(s) 511
MboII GAAGA 2 cut(s) 107, 210
MhlI GDGCHC 2 cut(s) 60, 478
MluCI AATT 5 cut(s) 230, 286, 411, 465, 493
MnlI CCTC 3 cut(s) 188, 219, 342
Mph1103I ATGCAT 2 cut(s) 48, 582
MseI TTAA 3 cut(s) 426, 492, 549
MspA1I CMGCKG 1 cut(s) 259
MspCI CTTAAG 2 cut(s) 425, 548
MwoI GCNNNNNNNGC 2 cut(s) 77, 248
NcoI CCATGG 1 cut(s) 322
NdeII GATC 1 cut(s) 511
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 5 cut(s) 50, 80, 326, 596, 632
NlaIV GGNNCC 2 cut(s) 144, 375
NsiI ATGCAT 2 cut(s) 48, 582
NspI RCATGY 2 cut(s) 50, 80
PaeI GCATGC 1 cut(s) 50
PagI TCATGA 1 cut(s) 628
PciSI GCTCTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 446
PkrI GCNGC 7 cut(s) 73, 211, 394, 397, 462, 608, 615
PshBI ATTAAT 1 cut(s) 492
Psp124BI GAGCTC 1 cut(s) 478
PspFI CCCAGC 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 144, 375
PvuII CAGCTG 1 cut(s) 259
SacI GAGCTC 1 cut(s) 478
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 3 cut(s) 426, 492, 549
SatI GCNGC 7 cut(s) 72, 210, 393, 396, 461, 607, 614
Sau3AI GATC 1 cut(s) 511
SduI GDGCHC 2 cut(s) 60, 478
SfaNI GCATC 1 cut(s) 567
SfcI CTRYAG 1 cut(s) 5
SmlI CTYRAG 3 cut(s) 425, 441, 548
SmoI CTYRAG 3 cut(s) 425, 441, 548
SphI GCATGC 1 cut(s) 50
Sse9I AATT 5 cut(s) 230, 286, 411, 465, 493
SsiI CCGC 3 cut(s) 209, 607, 614
SspMI CTAG 4 cut(s) 26, 53, 177, 252
SstI GAGCTC 1 cut(s) 478
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 1 cut(s) 302
TasI AATT 5 cut(s) 230, 286, 411, 465, 493
TauI GCSGC 3 cut(s) 212, 609, 616
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 3 cut(s) 426, 492, 549
Tru9I TTAA 3 cut(s) 426, 492, 549
TscAI CASTG 1 cut(s) 390
TseI GCWGC 4 cut(s) 71, 392, 395, 460
TspDTI ATGAA 3 cut(s) 10, 267, 546
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 1 cut(s) 390
Vha464I CTTAAG 2 cut(s) 425, 548
VspI ATTAAT 1 cut(s) 492
XapI RAATTY 2 cut(s) 286, 411
XceI RCATGY 2 cut(s) 50, 80
XspI CTAG 4 cut(s) 26, 53, 177, 252
Zsp2I ATGCAT 2 cut(s) 48, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.