Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015676

Physical Location & Seq

Genomic Coordinates Reverse (-)

8637444 .. 8639039

Gene Structure 1596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00086450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTTGAAGATTATTGCAAGCTTCGTACTAGGGTTTCTTTTTGTGAGGCATGCCTTAGGAGACTTCACTGCACATGCTGATCATAAAGGTAAAGAAGGGTTATTAATGACTGGAAAACATTCTGTATTGCCTGATGAAAAGGAACTAATTGAGGAAATCTCAAAAATCGCTGGGTCAAGGATTATAGGGATCGGAGGAAGGAAGATGGCGGCACAGAAAGTAGTGCTGAGAAATGGAGAGCTTACTCCTACTACTACTTCATCAAAGAATTCAGGTGCAACATGTGACTCTGAAGCTAGAAAAGGAGATCTAAATGTAACATGTAAACTTGATCATAAAAGTAGTAGTGCTAAGAAGAAGTTGAAAGTTGCTCATCATGATCACTTTGTAGCTTTTGGAAAGGACAGTAATAAGGCTTCAAAGTACAACTTCAACGGAAGACCACAAACCAAATTGAACCAAAAGGGTGGGATCAAAATGTTGAAAACTGCTGCCAGCAGTACGAGCAGCAACAATGGAATTCCTAGAGATAAGCCAACAAAACACTCTCAAGTAGATGAAGAAACTAGGCGGCTTCTTGAAGCAGAAAGAGAGATAGTAAACCTGATGCATAAAGATTATAAGGGATCCTCCGGAAGGAGTATGGGTCGCCGCAAGCCACCCATACACAACCAAGAGCCACAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

25.19

Weight (kDa)

9.95

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46170 FvH4_6g46170
malus_domestica	MD09G1076400.v1.1 MD09G1076500.v1.1 MD17G1067000.v1.1
prunus_persica	Prupe.3G247600_v2.0.a1
rosa_laevigata	RLG00000021470
rosa_multiflora	Rmu_sc0000946.1_g000003 Rmu_ssc0000076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00086450
rosa_rugosa	Rorug02G0509500
rosa_samantha	Rh2AG577100 Rh2BG588200 Rh2CG559000 Rh2DG598800
rosa_wichuraiana	Rw2G047920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
AccIII	TCCGGA	1 cut(s)	632
AciI	CCGC	3 cut(s)	209, 571, 652
AclWI	GGATC	4 cut(s)	197, 479, 621, 634
AcsI	RAATTY	2 cut(s)	268, 519
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	3 cut(s)	27, 425, 502
AfiI	CCNNNNNNNGG	1 cut(s)	636
AflIII	ACRYGT	2 cut(s)	281, 320
AgsI	TTSAA	7 cut(s)	7, 364, 420, 433, 457, 484, 581
AluBI	AGCT	4 cut(s)	21, 241, 296, 392
AluI	AGCT	4 cut(s)	21, 241, 296, 392
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	4 cut(s)	197, 479, 621, 634
Aor13HI	TCCGGA	1 cut(s)	632
ApeKI	GCWGC	2 cut(s)	491, 507
ApoI	RAATTY	2 cut(s)	268, 519
AseI	ATTAAT	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	118
AxyI	CCTNAGG	1 cut(s)	55
BamHI	GGATCC	1 cut(s)	626
BarI	GAAGNNNNNNTAC	2 cut(s)	400, 432
BbsI	GAAGAC	1 cut(s)	445
BbvI	GCAGC	2 cut(s)	478, 519
BccI	CCATC	1 cut(s)	199
BclI	TGATCA	3 cut(s)	79, 331, 379
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	4 cut(s)	29, 297, 525, 567
BglII	AGATCT	1 cut(s)	307
BisI	GCNGC	5 cut(s)	210, 492, 508, 572, 652
BlsI	GCNGC	5 cut(s)	211, 493, 509, 573, 653
BmiI	GGNNCC	1 cut(s)	628
BmsI	GCATC	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	445
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpuEI	CTTGAG	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	632
BsaXI	ACNNNNNCTCC	2 cut(s)	631, 661
Bsc4I	CCNNNNNNNGG	1 cut(s)	636
Bse1I	ACTGG	1 cut(s)	115
Bse21I	CCTNAGG	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	632
BseLI	CCNNNNNNNGG	1 cut(s)	636
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	478, 519
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	633
BslI	CCNNNNNNNGG	1 cut(s)	636
BsmAI	GTCTC	1 cut(s)	54
Bsp13I	TCCGGA	1 cut(s)	632
Bsp143I	GATC	7 cut(s)	79, 189, 307, 331, 379, 471, 626
BspACI	CCGC	3 cut(s)	209, 571, 652
BspCNI	CTCAG	1 cut(s)	219
BspEI	TCCGGA	1 cut(s)	632
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	628
BspPI	GGATC	4 cut(s)	197, 479, 621, 634
BsrI	ACTGG	1 cut(s)	115
BssMI	GATC	7 cut(s)	79, 189, 307, 331, 379, 471, 626
Bst4CI	ACNGT	1 cut(s)	407
BstC8I	GCNNGC	4 cut(s)	19, 51, 496, 656
BstDEI	CTNAG	3 cut(s)	55, 227, 351
BstENI	CCTNNNNNAGG	1 cut(s)	634
BstKTI	GATC	7 cut(s)	82, 192, 310, 334, 382, 474, 629
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	7 cut(s)	79, 189, 307, 331, 379, 471, 626
BstMWI	GCNNNNNNNGC	1 cut(s)	504
BstNSI	RCATGY	4 cut(s)	53, 77, 285, 324
BstV1I	GCAGC	2 cut(s)	478, 519
BstV2I	GAAGAC	1 cut(s)	445
BstX2I	RGATCY	2 cut(s)	307, 626
BstXI	CCANNNNNNTGG	1 cut(s)	467
BstYI	RGATCY	2 cut(s)	307, 626
Bsu36I	CCTNAGG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	4 cut(s)	19, 51, 496, 656
CciI	TCATGA	1 cut(s)	376
Csp6I	GTAC	3 cut(s)	26, 424, 501
CviAII	CATG	5 cut(s)	50, 74, 282, 321, 377
CviJI	RGCY	9 cut(s)	21, 241, 296, 392, 416, 535, 574, 658, 679
CviKI_1	RGCY	9 cut(s)	21, 241, 296, 392, 416, 535, 574, 658, 679
CviQI	GTAC	3 cut(s)	26, 424, 501
DdeI	CTNAG	3 cut(s)	55, 227, 351
DpnI	GATC	7 cut(s)	81, 191, 309, 333, 381, 473, 628
DpnII	GATC	7 cut(s)	79, 189, 307, 331, 379, 471, 626
Eco57I	CTGAAG	1 cut(s)	312
Eco81I	CCTNAGG	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	634
EcoRI	GAATTC	2 cut(s)	268, 519
EcoT22I	ATGCAT	1 cut(s)	612
FaeI	CATG	5 cut(s)	53, 77, 285, 324, 380
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FatI	CATG	5 cut(s)	49, 73, 281, 320, 376
FbaI	TGATCA	3 cut(s)	79, 331, 379
Fnu4HI	GCNGC	5 cut(s)	210, 492, 508, 572, 652
Fsp4HI	GCNGC	5 cut(s)	210, 492, 508, 572, 652
FspBI	CTAG	4 cut(s)	29, 297, 525, 567
GluI	GCNGC	5 cut(s)	210, 492, 508, 572, 652
GsaI	CCCAGC	1 cut(s)	174
HapII	CCGG	1 cut(s)	633
Hin1II	CATG	5 cut(s)	53, 77, 285, 324, 380
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	1 cut(s)	287
HpaII	CCGG	1 cut(s)	633
Hpy166II	GTNNAC	2 cut(s)	326, 601
Hpy188I	TCNGA	2 cut(s)	194, 292
Hpy188III	TCNNGA	3 cut(s)	377, 578, 633
Hpy8I	GTNNAC	2 cut(s)	326, 601
HpyAV	CCTTC	3 cut(s)	89, 192, 630
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4V	TGCA	4 cut(s)	17, 71, 278, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	504
HpyF3I	CTNAG	3 cut(s)	55, 227, 351
Hsp92II	CATG	5 cut(s)	53, 77, 285, 324, 380
Kpn2I	TCCGGA	1 cut(s)	632
Ksp22I	TGATCA	3 cut(s)	79, 331, 379
Kzo9I	GATC	7 cut(s)	79, 189, 307, 331, 379, 471, 626
LpnPI	CCDG	7 cut(s)	96, 144, 156, 258, 508, 617, 646
Lsp1109I	GCAGC	2 cut(s)	478, 519
LweI	GCATC	1 cut(s)	597
MaeI	CTAG	4 cut(s)	29, 297, 525, 567
MaeIII	GTNAC	2 cut(s)	284, 316
MalI	GATC	7 cut(s)	81, 191, 309, 333, 381, 473, 628
MboI	GATC	7 cut(s)	79, 189, 307, 331, 379, 471, 626
MboII	GAAGA	5 cut(s)	19, 214, 367, 450, 572
MflI	RGATCY	2 cut(s)	307, 626
MluCI	AATT	4 cut(s)	147, 268, 452, 519
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	4 cut(s)	39, 145, 188, 640
Mph1103I	ATGCAT	1 cut(s)	612
MroI	TCCGGA	1 cut(s)	632
MroXI	GAANNNNTTC	1 cut(s)	118
MseI	TTAA	1 cut(s)	104
MspI	CCGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	504
NdeII	GATC	7 cut(s)	79, 189, 307, 331, 379, 471, 626
NlaIII	CATG	5 cut(s)	53, 77, 285, 324, 380
NlaIV	GGNNCC	1 cut(s)	628
NmuCI	GTSAC	1 cut(s)	284
NsiI	ATGCAT	1 cut(s)	612
NspI	RCATGY	4 cut(s)	53, 77, 285, 324
PaeI	GCATGC	1 cut(s)	53
PagI	TCATGA	1 cut(s)	376
PciI	ACATGT	2 cut(s)	281, 320
PdmI	GAANNNNTTC	1 cut(s)	118
PkrI	GCNGC	5 cut(s)	211, 493, 509, 573, 653
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PscI	ACATGT	2 cut(s)	281, 320
PshBI	ATTAAT	1 cut(s)	104
PsiI	TTATAA	1 cut(s)	621
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	628
PsuI	RGATCY	2 cut(s)	307, 626
RsaI	GTAC	3 cut(s)	27, 425, 502
RsaNI	GTAC	3 cut(s)	26, 424, 501
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	5 cut(s)	210, 492, 508, 572, 652
Sau3AI	GATC	7 cut(s)	79, 189, 307, 331, 379, 471, 626
SchI	GAGTC	1 cut(s)	281
SetI	ASST	7 cut(s)	23, 91, 243, 277, 298, 394, 606
SfaNI	GCATC	1 cut(s)	597
SmlI	CTYRAG	1 cut(s)	549
SmoI	CTYRAG	1 cut(s)	549
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	4 cut(s)	147, 268, 452, 519
SsiI	CCGC	3 cut(s)	209, 571, 652
SspMI	CTAG	4 cut(s)	29, 297, 525, 567
TaaI	ACNGT	1 cut(s)	407
TasI	AATT	4 cut(s)	147, 268, 452, 519
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	3 cut(s)	212, 574, 654
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	2 cut(s)	491, 507
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	3 cut(s)	150, 249, 573
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	104
XagI	CCTNNNNNAGG	1 cut(s)	634
XapI	RAATTY	2 cut(s)	268, 519
XceI	RCATGY	4 cut(s)	53, 77, 285, 324
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	4 cut(s)	29, 297, 525, 567
Zsp2I	ATGCAT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.