Rmu_sc0000946.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000946.1
OG0015676
Physical Location & Seq
Forward (+)
11411 .. 13198
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000946.1_g000003.1.cds

Sequence Viewer

Length: 693 bp
atgctgaagattattgcaagcttcgtactagggtttctttttgtgaggcatgccgtaggagacttcactgcacatgctgatcataaaggtaaagaagaagggttattaatgactggaaaacattctgtattgcctgatgaaaaggaactaattgatgaaatctcaaaaatcgctgggtcaaggattatagggatcggaggaaggaagatggcggcacagaaagtagtgctgagaaatggagagcttactcctactactacttcatcaaagaattcaggtgcaacatgtgactctgaagctagaaaaggagatctaaatgtagcatgtaaacttgatcataaaagtagtagtgctaagaagaagttgaaagttgctcatcatgatcactttgtagcttttggaaaggacagtaataaggcttcaaagtacaacttcaacggaagaccacaaatcaaattgaaccaaaagggtgggatcaaaatattgaaaactgctgccagcagtacgagcagcaacattggaattcctagtgatgagccaacaaaacactctcaagcagatgaagaaactagacggcttcttgaagcagaaagagagatagtaaatctgatgcataaagattataagggatcctccggagggagtatgggtcgccgcaagccacccatacacaaccaagagccacagcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

25.05

Weight (kDa)

9.67

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
AccIII TCCGGA 1 cut(s) 635
AciI CCGC 2 cut(s) 212, 655
AclWI GGATC 4 cut(s) 200, 482, 624, 637
AcsI RAATTY 2 cut(s) 271, 522
AcuI CTGAAG 2 cut(s) 26, 315
AfaI GTAC 3 cut(s) 27, 428, 505
AfiI CCNNNNNNNGG 1 cut(s) 639
AflIII ACRYGT 1 cut(s) 284
AgsI TTSAA 6 cut(s) 367, 423, 436, 460, 487, 584
AluBI AGCT 4 cut(s) 21, 244, 299, 395
AluI AGCT 4 cut(s) 21, 244, 299, 395
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 4 cut(s) 200, 482, 624, 637
Aor13HI TCCGGA 1 cut(s) 635
ApeKI GCWGC 2 cut(s) 494, 510
ApoI RAATTY 2 cut(s) 271, 522
AseI ATTAAT 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 121
BamHI GGATCC 1 cut(s) 629
BarI GAAGNNNNNNTAC 2 cut(s) 403, 435
BbsI GAAGAC 1 cut(s) 448
BbvI GCAGC 2 cut(s) 481, 522
BccI CCATC 1 cut(s) 202
BceAI ACGGC 2 cut(s) 38, 590
BclI TGATCA 3 cut(s) 79, 334, 382
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 4 cut(s) 29, 300, 528, 570
BglII AGATCT 1 cut(s) 310
BisI GCNGC 4 cut(s) 213, 495, 511, 655
BlsI GCNGC 4 cut(s) 214, 496, 512, 656
BmiI GGNNCC 1 cut(s) 631
BmsI GCATC 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 448
BpuEI CTTGAG 1 cut(s) 537
BsaWI WCCGGW 1 cut(s) 635
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 639
Bse1I ACTGG 1 cut(s) 118
BseAI TCCGGA 1 cut(s) 635
BseLI CCNNNNNNNGG 1 cut(s) 639
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 118
BseXI GCAGC 2 cut(s) 481, 522
BseYI CCCAGC 1 cut(s) 173
BsgI GTGCAG 1 cut(s) 54
BsiSI CCGG 1 cut(s) 636
BslI CCNNNNNNNGG 1 cut(s) 639
BsmAI GTCTC 1 cut(s) 54
Bsp13I TCCGGA 1 cut(s) 635
Bsp143I GATC 7 cut(s) 79, 192, 310, 334, 382, 474, 629
BspACI CCGC 2 cut(s) 212, 655
BspCNI CTCAG 1 cut(s) 222
BspEI TCCGGA 1 cut(s) 635
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 631
BspPI GGATC 4 cut(s) 200, 482, 624, 637
BsrI ACTGG 1 cut(s) 118
BssMI GATC 7 cut(s) 79, 192, 310, 334, 382, 474, 629
Bst4CI ACNGT 1 cut(s) 410
BstC8I GCNNGC 4 cut(s) 19, 51, 499, 659
BstDEI CTNAG 2 cut(s) 230, 354
BstKTI GATC 7 cut(s) 82, 195, 313, 337, 385, 477, 632
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 7 cut(s) 79, 192, 310, 334, 382, 474, 629
BstMWI GCNNNNNNNGC 1 cut(s) 507
BstNSI RCATGY 4 cut(s) 53, 77, 288, 327
BstV1I GCAGC 2 cut(s) 481, 522
BstV2I GAAGAC 1 cut(s) 448
BstX2I RGATCY 2 cut(s) 310, 629
BstXI CCANNNNNNTGG 1 cut(s) 470
BstYI RGATCY 2 cut(s) 310, 629
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 4 cut(s) 19, 51, 499, 659
CciI TCATGA 1 cut(s) 379
Csp6I GTAC 3 cut(s) 26, 427, 504
CviAII CATG 5 cut(s) 50, 74, 285, 324, 380
CviJI RGCY 9 cut(s) 21, 244, 299, 395, 419, 538, 577, 661, 682
CviKI_1 RGCY 9 cut(s) 21, 244, 299, 395, 419, 538, 577, 661, 682
CviQI GTAC 3 cut(s) 26, 427, 504
DdeI CTNAG 2 cut(s) 230, 354
DpnI GATC 7 cut(s) 81, 194, 312, 336, 384, 476, 631
DpnII GATC 7 cut(s) 79, 192, 310, 334, 382, 474, 629
Eco57I CTGAAG 2 cut(s) 26, 315
EcoRI GAATTC 2 cut(s) 271, 522
EcoT22I ATGCAT 1 cut(s) 615
FaeI CATG 5 cut(s) 53, 77, 288, 327, 383
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FatI CATG 5 cut(s) 49, 73, 284, 323, 379
FbaI TGATCA 3 cut(s) 79, 334, 382
Fnu4HI GCNGC 4 cut(s) 213, 495, 511, 655
Fsp4HI GCNGC 4 cut(s) 213, 495, 511, 655
FspBI CTAG 4 cut(s) 29, 300, 528, 570
GluI GCNGC 4 cut(s) 213, 495, 511, 655
GsaI CCCAGC 1 cut(s) 177
HapII CCGG 1 cut(s) 636
Hin1II CATG 5 cut(s) 53, 77, 288, 327, 383
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 1 cut(s) 290
HpaII CCGG 1 cut(s) 636
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 3 cut(s) 197, 295, 609
Hpy188III TCNNGA 3 cut(s) 380, 581, 636
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 92, 195
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 4 cut(s) 17, 71, 281, 613
HpyF10VI GCNNNNNNNGC 1 cut(s) 507
HpyF3I CTNAG 2 cut(s) 230, 354
Hsp92II CATG 5 cut(s) 53, 77, 288, 327, 383
Kpn2I TCCGGA 1 cut(s) 635
Ksp22I TGATCA 3 cut(s) 79, 334, 382
Kzo9I GATC 7 cut(s) 79, 192, 310, 334, 382, 474, 629
LpnPI CCDG 6 cut(s) 99, 147, 159, 261, 511, 649
Lsp1109I GCAGC 2 cut(s) 481, 522
LweI GCATC 1 cut(s) 600
MaeI CTAG 4 cut(s) 29, 300, 528, 570
MaeIII GTNAC 1 cut(s) 287
MalI GATC 7 cut(s) 81, 194, 312, 336, 384, 476, 631
MboI GATC 7 cut(s) 79, 192, 310, 334, 382, 474, 629
MboII GAAGA 6 cut(s) 19, 107, 217, 370, 453, 575
MflI RGATCY 2 cut(s) 310, 629
MluCI AATT 4 cut(s) 150, 271, 455, 522
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 4 cut(s) 39, 191, 632, 643
Mph1103I ATGCAT 1 cut(s) 615
MroI TCCGGA 1 cut(s) 635
MroXI GAANNNNTTC 1 cut(s) 121
MseI TTAA 1 cut(s) 107
MspI CCGG 1 cut(s) 636
MwoI GCNNNNNNNGC 1 cut(s) 507
NdeII GATC 7 cut(s) 79, 192, 310, 334, 382, 474, 629
NlaIII CATG 5 cut(s) 53, 77, 288, 327, 383
NlaIV GGNNCC 1 cut(s) 631
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 615
NspI RCATGY 4 cut(s) 53, 77, 288, 327
PaeI GCATGC 1 cut(s) 53
PagI TCATGA 1 cut(s) 379
PciI ACATGT 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 121
PkrI GCNGC 4 cut(s) 214, 496, 512, 656
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PscI ACATGT 1 cut(s) 284
PshBI ATTAAT 1 cut(s) 107
PsiI TTATAA 1 cut(s) 624
PspFI CCCAGC 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 631
PsuI RGATCY 2 cut(s) 310, 629
RsaI GTAC 3 cut(s) 27, 428, 505
RsaNI GTAC 3 cut(s) 26, 427, 504
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 4 cut(s) 213, 495, 511, 655
Sau3AI GATC 7 cut(s) 79, 192, 310, 334, 382, 474, 629
SchI GAGTC 1 cut(s) 284
SetI ASST 6 cut(s) 23, 91, 246, 280, 301, 397
SfaNI GCATC 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
SphI GCATGC 1 cut(s) 53
Sse9I AATT 4 cut(s) 150, 271, 455, 522
SsiI CCGC 2 cut(s) 212, 655
SspI AATATT 1 cut(s) 483
SspMI CTAG 4 cut(s) 29, 300, 528, 570
TaaI ACNGT 1 cut(s) 410
TasI AATT 4 cut(s) 150, 271, 455, 522
TatI WGTACW 1 cut(s) 426
TauI GCSGC 2 cut(s) 215, 657
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 2 cut(s) 494, 510
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 4 cut(s) 153, 171, 252, 576
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 1 cut(s) 73
VspI ATTAAT 1 cut(s) 107
XapI RAATTY 2 cut(s) 271, 522
XceI RCATGY 4 cut(s) 53, 77, 288, 327
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 4 cut(s) 29, 300, 528, 570
Zsp2I ATGCAT 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.