Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0015676

Physical Location & Seq

Genomic Coordinates Forward (+)

80483950 .. 80485556

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG588200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCTGAAGATTATTGCAAGCTTCGTACTAGGGTTTCTTTTTGTGAGGCATGCCGTAGGAGACTTCACTGCACATGCTGATCATAAAGGTAAAGAAGAAGGGTTATTAATGACTGGAAAACATTCTGTATTGCCTGATGAAAAGGAACTAATTGATGAAATCTCAAAAATCGCTGGGTCAAGGATTATAGGGATCGGAGGAAGGAAGATGGCGGCACAGAAAGTAGTGCTGAGAAATGGAGAGCTTACTCCTACTACTACTTCATCAAAGAATTCAGGAAAGGACAGTAATAAGGCTTCAAAGTACAACTTCAACGGAAGACCACAAATCAAATTGAACCAAAAGGGTGGGATCAAAATATTGAAAACTGCTGCCAGCAGTACGAGCAGCAACATTGGAATTCTTAGTAAACACTCTCAAGTAGATGAAGAAACTAGACGGCTTCTTGAAGCAGAAAGAGAGATAGTAAATCTGATGCATAAAGATTATAAGGGATCCTCCGGAGGGAGTATGGGTCGCCGCAAGCCACCCATACACAACCAAGAGCCACAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.22

Weight (kDa)

9.91

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46170 FvH4_6g46170
malus_domestica	MD09G1076400.v1.1 MD09G1076500.v1.1 MD17G1067000.v1.1
prunus_persica	Prupe.3G247600_v2.0.a1
rosa_laevigata	RLG00000021470
rosa_multiflora	Rmu_sc0000946.1_g000003 Rmu_ssc0000076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00086450
rosa_rugosa	Rorug02G0509500
rosa_samantha	Rh2AG577100 Rh2BG588200 Rh2CG559000 Rh2DG598800
rosa_wichuraiana	Rw2G047920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AccIII	TCCGGA	1 cut(s)	500
AciI	CCGC	2 cut(s)	212, 520
AclWI	GGATC	4 cut(s)	200, 359, 489, 502
AcsI	RAATTY	2 cut(s)	271, 399
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	3 cut(s)	27, 305, 382
AfiI	CCNNNNNNNGG	1 cut(s)	504
AgsI	TTSAA	5 cut(s)	300, 313, 337, 364, 449
AluBI	AGCT	2 cut(s)	21, 244
AluI	AGCT	2 cut(s)	21, 244
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	4 cut(s)	200, 359, 489, 502
Aor13HI	TCCGGA	1 cut(s)	500
ApeKI	GCWGC	2 cut(s)	371, 387
ApoI	RAATTY	2 cut(s)	271, 399
AseI	ATTAAT	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	121
BamHI	GGATCC	1 cut(s)	494
BarI	GAAGNNNNNNTAC	2 cut(s)	280, 312
BbsI	GAAGAC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	358, 399
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	2 cut(s)	38, 455
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	2 cut(s)	29, 435
BisI	GCNGC	4 cut(s)	213, 372, 388, 520
BlsI	GCNGC	4 cut(s)	214, 373, 389, 521
BmiI	GGNNCC	1 cut(s)	496
BmsI	GCATC	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	500
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse1I	ACTGG	1 cut(s)	118
BseAI	TCCGGA	1 cut(s)	500
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	358, 399
BseYI	CCCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	501
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	1 cut(s)	54
Bsp13I	TCCGGA	1 cut(s)	500
Bsp143I	GATC	4 cut(s)	79, 192, 351, 494
BspACI	CCGC	2 cut(s)	212, 520
BspCNI	CTCAG	1 cut(s)	222
BspEI	TCCGGA	1 cut(s)	500
BspLI	GGNNCC	1 cut(s)	496
BspPI	GGATC	4 cut(s)	200, 359, 489, 502
BsrI	ACTGG	1 cut(s)	118
BssMI	GATC	4 cut(s)	79, 192, 351, 494
Bst4CI	ACNGT	1 cut(s)	287
BstC8I	GCNNGC	4 cut(s)	19, 51, 376, 524
BstDEI	CTNAG	2 cut(s)	230, 404
BstKTI	GATC	4 cut(s)	82, 195, 354, 497
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	4 cut(s)	79, 192, 351, 494
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNSI	RCATGY	2 cut(s)	53, 77
BstV1I	GCAGC	2 cut(s)	358, 399
BstV2I	GAAGAC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	494
BstXI	CCANNNNNNTGG	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	494
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	4 cut(s)	19, 51, 376, 524
Csp6I	GTAC	3 cut(s)	26, 304, 381
CviAII	CATG	2 cut(s)	50, 74
CviJI	RGCY	6 cut(s)	21, 244, 296, 442, 526, 547
CviKI_1	RGCY	6 cut(s)	21, 244, 296, 442, 526, 547
CviQI	GTAC	3 cut(s)	26, 304, 381
DdeI	CTNAG	2 cut(s)	230, 404
DpnI	GATC	4 cut(s)	81, 194, 353, 496
DpnII	GATC	4 cut(s)	79, 192, 351, 494
Eco57I	CTGAAG	1 cut(s)	26
EcoRI	GAATTC	2 cut(s)	271, 399
EcoT22I	ATGCAT	1 cut(s)	480
FaeI	CATG	2 cut(s)	53, 77
FaiI	YATR	8 cut(s)	51, 75, 84, 188, 480, 489, 512, 533
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	2 cut(s)	49, 73
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	4 cut(s)	213, 372, 388, 520
Fsp4HI	GCNGC	4 cut(s)	213, 372, 388, 520
FspBI	CTAG	2 cut(s)	29, 435
GluI	GCNGC	4 cut(s)	213, 372, 388, 520
GsaI	CCCAGC	1 cut(s)	177
HapII	CCGG	1 cut(s)	501
Hin1II	CATG	2 cut(s)	53, 77
HindIII	AAGCTT	1 cut(s)	19
HpaII	CCGG	1 cut(s)	501
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	2 cut(s)	197, 474
Hpy188III	TCNNGA	3 cut(s)	276, 446, 501
Hpy8I	GTNNAC	1 cut(s)	410
HpyAV	CCTTC	2 cut(s)	92, 195
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	3 cut(s)	17, 71, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	2 cut(s)	230, 404
Hsp92II	CATG	2 cut(s)	53, 77
Kpn2I	TCCGGA	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	79, 192, 351, 494
LpnPI	CCDG	6 cut(s)	99, 147, 159, 261, 388, 514
Lsp1109I	GCAGC	2 cut(s)	358, 399
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	2 cut(s)	29, 435
MalI	GATC	4 cut(s)	81, 194, 353, 496
MboI	GATC	4 cut(s)	79, 192, 351, 494
MboII	GAAGA	5 cut(s)	19, 107, 217, 330, 440
MflI	RGATCY	1 cut(s)	494
MluCI	AATT	4 cut(s)	150, 271, 332, 399
MnlI	CCTC	4 cut(s)	39, 191, 497, 508
Mph1103I	ATGCAT	1 cut(s)	480
MroI	TCCGGA	1 cut(s)	500
MroXI	GAANNNNTTC	1 cut(s)	121
MseI	TTAA	1 cut(s)	107
MspI	CCGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	1 cut(s)	384
NdeII	GATC	4 cut(s)	79, 192, 351, 494
NlaIII	CATG	2 cut(s)	53, 77
NlaIV	GGNNCC	1 cut(s)	496
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	2 cut(s)	53, 77
PaeI	GCATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	214, 373, 389, 521
PshBI	ATTAAT	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	3 cut(s)	27, 305, 382
RsaNI	GTAC	3 cut(s)	26, 304, 381
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	4 cut(s)	213, 372, 388, 520
Sau3AI	GATC	4 cut(s)	79, 192, 351, 494
SetI	ASST	3 cut(s)	23, 91, 246
SfaNI	GCATC	1 cut(s)	465
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	4 cut(s)	150, 271, 332, 399
SsiI	CCGC	2 cut(s)	212, 520
SspI	AATATT	1 cut(s)	360
SspMI	CTAG	2 cut(s)	29, 435
TaaI	ACNGT	1 cut(s)	287
TasI	AATT	4 cut(s)	150, 271, 332, 399
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	2 cut(s)	215, 522
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	2 cut(s)	371, 387
TspDTI	ATGAA	4 cut(s)	153, 171, 252, 441
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	107
XapI	RAATTY	2 cut(s)	271, 399
XceI	RCATGY	2 cut(s)	53, 77
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	2 cut(s)	29, 435
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.