Rorug02G0509500

leucine-rich repeat receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
64025527 .. 64031680
6154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0509500.1

Sequence Viewer

Length: 1422 bp
ATGCAATCCGATAGTGGCAAGTTATTCATTGGTGGCATATCTTGGGACACAAATGAAGAGCGTCTCAAGGAGTATTTCAGTGCTTTTGGGGAAGTGGTAGAAGCAGTGATCATGAAGGATCGGACCACAGGACGTGCTCGTGGATTTGGTTTTGTAGTTTTTGCAGACCCAGCAGTAGCAGACACTGTCATAATGGAAAAGCACAACATTGATGGAAGAATGGTGGAGGCAAAAAAGGCTGTTCCCAGGGATGACCAGAACACTTTGAGTAGAAACAGTGGCAGCATCCATGGTTCTCCAGGTCCAGGACGCACAAGAAAAATATTTGTTGGAGGTTTAGCGTCTACTGTTACAGAGGGTGACTTCAAGAAGTACTTTGAACAGTTTGGGACAATTACAGATGTTGTTGTGATGTATGATCACAACACCCAGAGGCCGAGAGGCTTTGGATTCATCACTTATGATTCAGAGGAAGCAGTGGACAAGGTTTTGCTAAAGACATTTCATGAACTGAATGGGAAGATGGTTGAGGTCAAGCGTGCAGTTCCAAAAGAGTTATCACCTGGTCCCAGTCGCAGCCCTCTTGGTGGATACAATTATGGTCTGAGTAGGGTCAATAACTTCCTTACTGGCTATACTCAGGGGTATAATCCAAGTACGGTTGGAGGTTATGGACTTGGTAGGTTCAGTCCAGTTGCTGGTGGTCGAAGTGGATTTCCTCCATTTGGTTCTGGTTATGGAATGGGAATGAACTTTGAGCCAGGGTTGAGCCCAAGTTTTGGAGGAAATGCAAATTTTAATAATAATGTGAGCTATGGACGGGGATTGAGCCCTTATTATATCAATAATTCAAATAGGTTTAGCAATCCCATTGGATATGATGGTAATAATGGAGGAAGCTCATCCTTTTTTAGCTCAGTGACTCGGAATTTGTGGGGTAATGGGGGTCTTAATACAAATTCTGCAAATTCCAGTGCTTACATGGGTTCAGGAAGTGGTAGCATTGGAGGAAGTACATTTGGCAATGCTGGAGTTAATTGGCGTTCTTCAGCAATTTCACCTCAAGGTGGAGGAAATAATGTCTCTAACAATAGTGGGACACTTGGCTATGGAGCTGGTGATAACAGTTATGGCTTGGGAACCGGAGGGTATGGAAGAAACAGTGGTGCAACTGTGGGCCCTACATCTTCTTTTGCTGCATCAAATGGTGGTTTTGAGGGCTCCTTTACTGACTTCTACAGTAGTGGTTCAGTGTACGGAGATCCTACTTGGAGATCATCAAATTCCGAGCGAGATGGGTCTGGCCCCTTTGGGTATGGGCTTGGCAGTGCAGCTTCTGATGTTTCAGCTAAAAGTTCTCCTGGTTATGTTGGTGGTTATAGTGTTAATAAGAGACAGCCGAATACAGGTGATGTCAAATAA

Protein Analysis

473

Amino Acids

49.61

Weight (kDa)

8.91

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 8 - 68 9.7e-16 RNA recognition motif
RRM_7 PF16367 106 - 176 3.1e-06 RNA recognition motif
RRM_1 PF00076 108 - 165 1.3e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 698, 779
AccI GTMKAC 1 cut(s) 344
AclWI GGATC 2 cut(s) 126, 1256
AcsI RAATTY 5 cut(s) 793, 928, 958, 967, 1282
AcuI CTGAAG 1 cut(s) 1032
AfaI GTAC 4 cut(s) 374, 658, 1015, 1256
AfiI CCNNNNNNNGG 7 cut(s) 305, 587, 698, 725, 779, 1067, 1406
AgsI TTSAA 3 cut(s) 367, 380, 852
AjiI CACGTC 1 cut(s) 134
AjnI CCWGG 6 cut(s) 245, 298, 304, 562, 760, 1360
AluBI AGCT 6 cut(s) 813, 900, 915, 1115, 1334, 1349
AluI AGCT 6 cut(s) 813, 900, 915, 1115, 1334, 1349
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 3 cut(s) 68, 1087, 1387
AlwI GGATC 2 cut(s) 126, 1256
AlwNI CAGNNNCTG 3 cut(s) 185, 698, 1337
AoxI GGCC 3 cut(s) 434, 1177, 1303
ApaI GGGCCC 1 cut(s) 1181
ApeKI GCWGC 4 cut(s) 282, 576, 1196, 1331
ApoI RAATTY 5 cut(s) 793, 928, 958, 967, 1282
ArsI GACNNNNNNTTYG 2 cut(s) 913, 945
AspS9I GGNCC 6 cut(s) 123, 302, 566, 1177, 1178, 1304
AsuHPI GGTGA 5 cut(s) 371, 552, 1050, 1130, 1421
AvaII GGWCC 3 cut(s) 123, 302, 566
BaeGI GKGCMC 1 cut(s) 1181
BanII GRGCYC 4 cut(s) 773, 833, 1181, 1223
BauI CACGAG 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 4 cut(s) 294, 588, 1183, 1343
BccI CCATC 4 cut(s) 206, 517, 875, 1289
BciT130I CCWGG 6 cut(s) 247, 300, 306, 564, 762, 1362
BciVI GTATCC 1 cut(s) 584
BclI TGATCA 2 cut(s) 108, 418
BcoDI GTCTC 3 cut(s) 68, 1087, 1387
BfmI CTRYAG 1 cut(s) 1237
BfuI GTATCC 1 cut(s) 584
BisI GCNGC 4 cut(s) 283, 577, 1197, 1332
BlsI GCNGC 4 cut(s) 284, 578, 1198, 1333
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 6 cut(s) 247, 300, 306, 564, 762, 1362
Bme18I GGWCC 3 cut(s) 123, 302, 566
BmgBI CACGTC 1 cut(s) 134
BmgT120I GGNCC 6 cut(s) 123, 302, 566, 1177, 1178, 1304
BmiI GGNNCC 5 cut(s) 568, 1141, 1179, 1222, 1306
BmrFI CCNGG 6 cut(s) 247, 300, 306, 564, 762, 1362
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 2 cut(s) 294, 1208
BmuI ACTGGG 1 cut(s) 564
BpmI CTGGAG 2 cut(s) 282, 1050
BpuEI CTTGAG 2 cut(s) 50, 1047
BsaJI CCNNGG 4 cut(s) 245, 246, 289, 761
BsaWI WCCGGW 1 cut(s) 1142
Bsc4I CCNNNNNNNGG 7 cut(s) 305, 587, 698, 725, 779, 1067, 1406
Bse1I ACTGG 4 cut(s) 570, 634, 692, 972
Bse3DI GCAATG 1 cut(s) 1030
BseBI CCWGG 6 cut(s) 247, 300, 306, 564, 762, 1362
BseDI CCNNGG 4 cut(s) 245, 246, 289, 761
BseGI GGATG 3 cut(s) 256, 285, 902
BseLI CCNNNNNNNGG 7 cut(s) 305, 587, 698, 725, 779, 1067, 1406
BseMI GCAATG 1 cut(s) 1030
BseMII CTCAG 3 cut(s) 596, 653, 930
BseNI ACTGG 4 cut(s) 570, 634, 692, 972
BseSI GKGCMC 1 cut(s) 1181
BseXI GCAGC 4 cut(s) 294, 588, 1183, 1343
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 2 cut(s) 561, 1350
BshFI GGCC 3 cut(s) 436, 1179, 1305
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 1143
BslFI GGGAC 4 cut(s) 59, 403, 552, 1111
BslI CCNNNNNNNGG 7 cut(s) 305, 587, 698, 725, 779, 1067, 1406
BsmAI GTCTC 3 cut(s) 68, 1087, 1387
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 4 cut(s) 59, 403, 552, 1111
BsnI GGCC 3 cut(s) 436, 1179, 1305
Bsp120I GGGCCC 1 cut(s) 1177
Bsp1286I GDGCHC 5 cut(s) 139, 773, 833, 1181, 1223
Bsp143I GATC 5 cut(s) 108, 118, 418, 1261, 1274
Bsp19I CCATGG 1 cut(s) 289
BspANI GGCC 3 cut(s) 436, 1179, 1305
BspCNI CTCAG 3 cut(s) 597, 652, 929
BspHI TCATGA 2 cut(s) 111, 505
BspLI GGNNCC 5 cut(s) 568, 1141, 1179, 1222, 1306
BspPI GGATC 2 cut(s) 126, 1256
BspQI GCTCTTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 1030
BsrI ACTGG 4 cut(s) 570, 634, 692, 972
BssECI CCNNGG 4 cut(s) 245, 246, 289, 761
BssMI GATC 5 cut(s) 108, 118, 418, 1261, 1274
BssSI CACGAG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 6 cut(s) 247, 300, 306, 564, 762, 1362
Bst4CI ACNGT 9 cut(s) 187, 278, 349, 384, 661, 1127, 1163, 1174, 1241
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 3 cut(s) 605, 639, 916
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 3 cut(s) 256, 285, 902
BstKTI GATC 5 cut(s) 111, 121, 421, 1264, 1277
BstMAI GTCTC 3 cut(s) 68, 1087, 1387
BstMBI GATC 5 cut(s) 108, 118, 418, 1261, 1274
BstMWI GCNNNNNNNGC 2 cut(s) 170, 236
BstNI CCWGG 6 cut(s) 247, 300, 306, 564, 762, 1362
BstSCI CCNGG 6 cut(s) 245, 298, 304, 562, 760, 1360
BstSFI CTRYAG 1 cut(s) 1237
BstSLI GKGCMC 1 cut(s) 1181
BstV1I GCAGC 4 cut(s) 294, 588, 1183, 1343
BstX2I RGATCY 1 cut(s) 1261
BstYI RGATCY 1 cut(s) 1261
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 3 cut(s) 436, 1179, 1305
BtgI CCRYGG 1 cut(s) 289
BtrI CACGTC 1 cut(s) 134
BtsCI GGATG 3 cut(s) 256, 285, 902
BtsI GCAGTG 3 cut(s) 111, 483, 1333
Cac8I GCNNGC 1 cut(s) 540
CaiI CAGNNNCTG 3 cut(s) 185, 698, 1337
CciI TCATGA 2 cut(s) 111, 505
Cfr13I GGNCC 6 cut(s) 123, 302, 566, 1177, 1178, 1304
CseI GACGC 3 cut(s) 50, 318, 330
CsiI ACCWGGT 1 cut(s) 562
Csp6I GTAC 4 cut(s) 373, 657, 1014, 1255
CviAII CATG 4 cut(s) 112, 290, 506, 982
CviQI GTAC 4 cut(s) 373, 657, 1014, 1255
DdeI CTNAG 3 cut(s) 605, 639, 916
DpnI GATC 5 cut(s) 110, 120, 420, 1263, 1276
DpnII GATC 5 cut(s) 108, 118, 418, 1261, 1274
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 4 cut(s) 773, 833, 1181, 1223
Eco47I GGWCC 3 cut(s) 123, 302, 566
Eco57I CTGAAG 1 cut(s) 1032
EcoO109I RGGNCCY 1 cut(s) 1178
EcoRII CCWGG 6 cut(s) 245, 298, 304, 562, 760, 1360
EcoT14I CCWWGG 1 cut(s) 289
EcoT38I GRGCYC 4 cut(s) 773, 833, 1181, 1223
ErhI CCWWGG 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 4 cut(s) 115, 293, 509, 985
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 4 cut(s) 59, 403, 552, 1111
FatI CATG 4 cut(s) 111, 289, 505, 981
FbaI TGATCA 2 cut(s) 108, 418
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 4 cut(s) 283, 577, 1197, 1332
FokI GGATG 3 cut(s) 263, 272, 889
FriOI GRGCYC 4 cut(s) 773, 833, 1181, 1223
Fsp4HI GCNGC 4 cut(s) 283, 577, 1197, 1332
GluI GCNGC 4 cut(s) 283, 577, 1197, 1332
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 2 cut(s) 282, 1050
HaeIII GGCC 3 cut(s) 436, 1179, 1305
HapII CCGG 1 cut(s) 1143
HgaI GACGC 3 cut(s) 50, 318, 330
Hin1II CATG 4 cut(s) 115, 293, 509, 985
HinfI GANTC 3 cut(s) 450, 464, 922
HpaII CCGG 1 cut(s) 1143
HphI GGTGA 5 cut(s) 371, 552, 1050, 1130, 1421
Hpy166II GTNNAC 3 cut(s) 345, 481, 1255
Hpy188I TCNGA 7 cut(s) 10, 123, 469, 606, 927, 1288, 1339
Hpy188III TCNNGA 4 cut(s) 112, 367, 506, 990
Hpy8I GTNNAC 3 cut(s) 345, 481, 1255
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 9 cut(s) 187, 278, 349, 384, 661, 1127, 1163, 1174, 1241
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 8 cut(s) 4, 164, 542, 791, 965, 1169, 1199, 1331
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 236
HpyF3I CTNAG 3 cut(s) 605, 639, 916
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 4 cut(s) 115, 293, 509, 985
Ksp22I TGATCA 2 cut(s) 108, 418
Kzo9I GATC 5 cut(s) 108, 118, 418, 1261, 1274
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 1112, 1226
Lsp1109I GCAGC 4 cut(s) 294, 588, 1183, 1343
LweI GCATC 2 cut(s) 294, 1208
MabI ACCWGGT 1 cut(s) 562
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 3 cut(s) 349, 359, 919
MalI GATC 5 cut(s) 110, 120, 420, 1263, 1276
MboI GATC 5 cut(s) 108, 118, 418, 1261, 1274
MboII GAAGA 6 cut(s) 68, 228, 532, 1038, 1167, 1179
MflI RGATCY 1 cut(s) 1261
MhlI GDGCHC 5 cut(s) 139, 773, 833, 1181, 1223
MlyI GAGTC 1 cut(s) 916
MmeI TCCRAC 2 cut(s) 310, 643
MseI TTAA 4 cut(s) 798, 951, 1035, 1386
MspI CCGG 1 cut(s) 1143
MspR9I CCNGG 6 cut(s) 247, 300, 306, 564, 762, 1362
MvaI CCWGG 6 cut(s) 247, 300, 306, 564, 762, 1362
MwoI GCNNNNNNNGC 2 cut(s) 170, 236
NcoI CCATGG 1 cut(s) 289
NdeII GATC 5 cut(s) 108, 118, 418, 1261, 1274
NlaIII CATG 4 cut(s) 115, 293, 509, 985
NlaIV GGNNCC 5 cut(s) 568, 1141, 1179, 1222, 1306
NmeAIII GCCGAG 1 cut(s) 462
NmuCI GTSAC 2 cut(s) 359, 919
PagI TCATGA 2 cut(s) 111, 505
PasI CCCWGGG 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 51
PfeI GAWTC 2 cut(s) 450, 464
PflFI GACNNNGTC 1 cut(s) 185
PflMI CCANNNNNTGG 2 cut(s) 698, 779
PfoI TCCNGGA 1 cut(s) 304
PkrI GCNGC 4 cut(s) 284, 578, 1198, 1333
PleI GAGTC 1 cut(s) 916
PpsI GAGTC 1 cut(s) 916
Psp6I CCWGG 6 cut(s) 245, 298, 304, 562, 760, 1360
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 6 cut(s) 245, 298, 304, 562, 760, 1360
PspN4I GGNNCC 5 cut(s) 568, 1141, 1179, 1222, 1306
PspOMI GGGCCC 1 cut(s) 1177
PspPI GGNCC 6 cut(s) 123, 302, 566, 1177, 1178, 1304
PstNI CAGNNNCTG 3 cut(s) 185, 698, 1337
PsuI RGATCY 1 cut(s) 1261
PsyI GACNNNGTC 1 cut(s) 185
RsaI GTAC 4 cut(s) 374, 658, 1015, 1256
RsaNI GTAC 4 cut(s) 373, 657, 1014, 1255
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 4 cut(s) 798, 951, 1035, 1386
SatI GCNGC 4 cut(s) 283, 577, 1197, 1332
Sau3AI GATC 5 cut(s) 108, 118, 418, 1261, 1274
Sau96I GGNCC 6 cut(s) 123, 302, 566, 1177, 1178, 1304
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 1 cut(s) 916
ScrFI CCNGG 6 cut(s) 247, 300, 306, 564, 762, 1362
SduI GDGCHC 5 cut(s) 139, 773, 833, 1181, 1223
SexAI ACCWGGT 1 cut(s) 562
SfaNI GCATC 2 cut(s) 294, 1208
SfcI CTRYAG 1 cut(s) 1237
SinI GGWCC 3 cut(s) 123, 302, 566
SmlI CTYRAG 2 cut(s) 65, 1062
SmoI CTYRAG 2 cut(s) 65, 1062
SspI AATATT 1 cut(s) 324
StyD4I CCNGG 6 cut(s) 245, 298, 304, 562, 760, 1360
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 9 cut(s) 187, 278, 349, 384, 661, 1127, 1163, 1174, 1241
TaiI ACGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 706
TatI WGTACW 2 cut(s) 372, 1013
TfiI GAWTC 2 cut(s) 450, 464
Tru1I TTAA 4 cut(s) 798, 951, 1035, 1386
Tru9I TTAA 4 cut(s) 798, 951, 1035, 1386
TseFI GTSAC 2 cut(s) 359, 919
TseI GCWGC 4 cut(s) 282, 576, 1196, 1331
Tsp45I GTSAC 2 cut(s) 359, 919
TspDTI ATGAA 7 cut(s) 16, 69, 128, 442, 494, 522, 764
TspGWI ACGGA 1 cut(s) 1272
Tth111I GACNNNGTC 1 cut(s) 185
Van91I CCANNNNNTGG 2 cut(s) 698, 779
VpaK11BI GGWCC 3 cut(s) 123, 302, 566
XapI RAATTY 5 cut(s) 793, 928, 958, 967, 1282
XcmI CCANNNNNNNNNTGG 1 cut(s) 979
XmiI GTMKAC 1 cut(s) 344
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.