RchiOBHm_Chr2g0164641

Phosphatidylinositol 4-kinase gamma 7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001564
Physical Location & Seq
Reverse (-)
79674997 .. 79676924
1928 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53268

Sequence Viewer

Length: 1080 bp
ATGTCTCCTGAGGTGGATAAACGTGTACATTACCAGATGGCAGTTGCAACCTGTAGAGGACCTCTTAGTGGTGAGTACTATGGGAATAAGAGATTGGAAAAGAAACATTGTGCAAAGAGACGTGTATTTGTGCAGACTGAAACTGGTTCTGTTTTGGGCATAGAGCTCGATAGGAGTGACAATGCGCACACACTGAAGAGGAAATTAAGGCTTGCACTTAATGTCCCAACTGATGAGAGTTCACTGGTATGTGGTGACATGGTTTTGAAGAATGATCTCAGCATTGTTAGAAATGATTCGCCGCTTCTTCTCACCAGGAACTTGATGCACAGAAGTTCATCTACCCCCTGTCTCGCACCTATTGGGAGGGATTTTCAGCAGAGGGATCAGAGTGGCCCGATTGAGGTACTGGGATACTCGGATAAATTTGCTAGAACAAAACAACTGGTTGTCGATATTGTGAAGGCAATAAGAAATGACATTGATCCAGTTCCTGTTCATGGTGGGCTTGGAGGTGCATATTATTTCAGAAATTGTCGTGGTGAAAACAGTGCCATTGTAAAACCAACAGATGAGGAACCTTATGCCCCAAATAACCCAAAAGGTTTTGTAGGGAAAGTTCTTGGACAACCAGGTCTCAAACGTTCAGTACGGGTTGGGGAGACGGGTTTTAGAGAAGTCGCAGCCTTCCTTCTTGATCACAATAATTTTGCTAATGTGCCTGATACTGCTCTTGTGAAGGTCACACATTCAGTTTTTAATGTCAATGATGGGGTGAAGGGTAATGTGCATCAAAACAAAAAGCAAGCAAGTAAGATTGCATCACTGCAGCAGTTCATTCCTCATGATTTTGATGCCAGTGATTATGGGACTTCTAGCTTCCCTGTTGCTGCCGTGCATAGAATAGGGATTCTAGATGTCCGGATTCTAAACACAGACAGGCATGGTGGCAACCTTCTGGTTCGGAAGCTTGATGATGCTGGGAGATTTGGTCAGAAAGTTTGGAGGATCCATACTTTGAGTGGATGCATTGGCCTCAGGCATCAATTCCTTTCTCTGATGATGAGCTTGCGTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PI3_PI4_kinase

Protein Analysis

359

Amino Acids

39.81

Weight (kDa)

9.57

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI3_PI4_kinase PF00454 172 - 324 5.4e-23 Phosphatidylinositol 3- and 4-kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 633
Acc16I TGCGCA 1 cut(s) 186
AccIII TCCGGA 1 cut(s) 921
AciI CCGC 1 cut(s) 302
AclI AACGTT 1 cut(s) 643
AclWI GGATC 4 cut(s) 393, 479, 1003, 1016
AcsI RAATTY 1 cut(s) 425
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 4 cut(s) 27, 77, 408, 651
AfiI CCNNNNNNNGG 3 cut(s) 68, 403, 500
AflIII ACRYGT 2 cut(s) 22, 121
AgsI TTSAA 1 cut(s) 268
AjiI CACGTC 1 cut(s) 122
AjnI CCWGG 2 cut(s) 314, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 4 cut(s) 166, 879, 970, 1068
AluI AGCT 4 cut(s) 166, 879, 970, 1068
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 5 cut(s) 9, 112, 356, 641, 656
AlwI GGATC 4 cut(s) 393, 479, 1003, 1016
AlwNI CAGNNNCTG 1 cut(s) 494
Aor13HI TCCGGA 1 cut(s) 921
AoxI GGCC 2 cut(s) 394, 1033
ApeKI GCWGC 3 cut(s) 683, 829, 890
ApoI RAATTY 1 cut(s) 425
Asp700I GAANNNNTTC 1 cut(s) 295
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 2 cut(s) 59, 395
AsuHPI GGTGA 5 cut(s) 83, 266, 304, 554, 787
AvaII GGWCC 1 cut(s) 59
AxyI CCTNAGG 2 cut(s) 9, 1037
BamHI GGATCC 1 cut(s) 1008
BanII GRGCYC 1 cut(s) 168
BarI GAAGNNNNNNTAC 2 cut(s) 325, 357
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 3 cut(s) 695, 841, 877
BccI CCATC 2 cut(s) 31, 764
BceAI ACGGC 1 cut(s) 878
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 2 cut(s) 316, 633
BciVI GTATCC 1 cut(s) 407
BclI TGATCA 1 cut(s) 697
BcoDI GTCTC 5 cut(s) 9, 112, 356, 641, 656
BfaI CTAG 3 cut(s) 432, 876, 914
BfmI CTRYAG 2 cut(s) 52, 827
BfuI GTATCC 1 cut(s) 407
BisI GCNGC 4 cut(s) 302, 684, 830, 891
BlsI GCNGC 4 cut(s) 303, 685, 831, 892
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 2 cut(s) 316, 633
Bme18I GGWCC 1 cut(s) 59
BmgBI CACGTC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 59, 395
BmiI GGNNCC 2 cut(s) 579, 1010
BmrFI CCNGG 2 cut(s) 316, 633
BmrI ACTGGG 1 cut(s) 419
BmsI GCATC 7 cut(s) 315, 799, 830, 844, 967, 1016, 1051
BmuI ACTGGG 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 641
BsaWI WCCGGW 1 cut(s) 921
BsaXI ACNNNNNCTCC 2 cut(s) 976, 1006
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 403, 500
Bse1I ACTGG 6 cut(s) 148, 249, 414, 450, 488, 858
Bse21I CCTNAGG 2 cut(s) 9, 1037
BseAI TCCGGA 1 cut(s) 921
BseBI CCWGG 2 cut(s) 316, 633
BseGI GGATG 1 cut(s) 1031
BseLI CCNNNNNNNGG 3 cut(s) 68, 403, 500
BseMII CTCAG 2 cut(s) 292, 1051
BseNI ACTGG 6 cut(s) 148, 249, 414, 450, 488, 858
BseXI GCAGC 3 cut(s) 695, 841, 877
BseYI CCCAGC 1 cut(s) 980
BsgI GTGCAG 1 cut(s) 152
BshFI GGCC 2 cut(s) 396, 1035
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 922
BslFI GGGAC 2 cut(s) 209, 883
BslI CCNNNNNNNGG 3 cut(s) 68, 403, 500
BsmAI GTCTC 5 cut(s) 9, 112, 356, 641, 656
BsmBI CGTCTC 2 cut(s) 112, 656
BsmFI GGGAC 2 cut(s) 209, 883
BsnI GGCC 2 cut(s) 396, 1035
Bso31I GGTCTC 1 cut(s) 641
Bsp1286I GDGCHC 1 cut(s) 168
Bsp13I TCCGGA 1 cut(s) 921
Bsp1407I TGTACA 1 cut(s) 25
Bsp143I GATC 5 cut(s) 274, 385, 484, 697, 1008
BspACI CCGC 1 cut(s) 302
BspANI GGCC 2 cut(s) 396, 1035
BspCNI CTCAG 2 cut(s) 291, 1050
BspEI TCCGGA 1 cut(s) 921
BspHI TCATGA 1 cut(s) 844
BspLI GGNNCC 2 cut(s) 579, 1010
BspMAI CTGCAG 1 cut(s) 831
BspPI GGATC 4 cut(s) 393, 479, 1003, 1016
BspTNI GGTCTC 1 cut(s) 641
BsrGI TGTACA 1 cut(s) 25
BsrI ACTGG 6 cut(s) 148, 249, 414, 450, 488, 858
BssMI GATC 5 cut(s) 274, 385, 484, 697, 1008
Bst2UI CCWGG 2 cut(s) 316, 633
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 1 cut(s) 191
BstAUI TGTACA 1 cut(s) 25
BstC8I GCNNGC 3 cut(s) 213, 807, 1070
BstDEI CTNAG 4 cut(s) 9, 65, 278, 1037
BstF5I GGATG 1 cut(s) 1031
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 5 cut(s) 277, 388, 487, 700, 1011
BstMAI GTCTC 5 cut(s) 9, 112, 356, 641, 656
BstMBI GATC 5 cut(s) 274, 385, 484, 697, 1008
BstNI CCWGG 2 cut(s) 316, 633
BstSCI CCNGG 2 cut(s) 314, 631
BstSFI CTRYAG 2 cut(s) 52, 827
BstV1I GCAGC 3 cut(s) 695, 841, 877
BstX2I RGATCY 1 cut(s) 1008
BstYI RGATCY 1 cut(s) 1008
Bsu36I CCTNAGG 2 cut(s) 9, 1037
BsuI GTATCC 1 cut(s) 407
BsuRI GGCC 2 cut(s) 396, 1035
BtrI CACGTC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 1031
BtsI GCAGTG 1 cut(s) 824
BtsIMutI CAGTG 5 cut(s) 191, 242, 556, 824, 865
Cac8I GCNNGC 3 cut(s) 213, 807, 1070
CaiI CAGNNNCTG 1 cut(s) 494
CciI TCATGA 1 cut(s) 844
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 2 cut(s) 59, 395
CsiI ACCWGGT 1 cut(s) 631
Csp6I GTAC 4 cut(s) 26, 76, 407, 650
CviAII CATG 4 cut(s) 259, 500, 845, 944
CviJI RGCY 9 cut(s) 166, 211, 396, 508, 686, 879, 970, 1035, 1068
CviKI_1 RGCY 9 cut(s) 166, 211, 396, 508, 686, 879, 970, 1035, 1068
CviQI GTAC 4 cut(s) 26, 76, 407, 650
DdeI CTNAG 4 cut(s) 9, 65, 278, 1037
DpnI GATC 5 cut(s) 276, 387, 486, 699, 1010
DpnII GATC 5 cut(s) 274, 385, 484, 697, 1008
DrdI GACNNNNNNGTC 1 cut(s) 633
DseDI GACNNNNNNGTC 1 cut(s) 633
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 641
Eco47I GGWCC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 215
Eco81I CCTNAGG 2 cut(s) 9, 1037
EcoICRI GAGCTC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 59
EcoRII CCWGG 2 cut(s) 314, 631
EcoT22I ATGCAT 1 cut(s) 1031
EcoT38I GRGCYC 1 cut(s) 168
Esp3I CGTCTC 2 cut(s) 112, 656
FaeI CATG 4 cut(s) 262, 503, 848, 947
FaqI GGGAC 2 cut(s) 209, 883
FatI CATG 4 cut(s) 258, 499, 844, 943
FbaI TGATCA 1 cut(s) 697
Fnu4HI GCNGC 4 cut(s) 302, 684, 830, 891
FokI GGATG 1 cut(s) 1038
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 4 cut(s) 302, 684, 830, 891
FspAI RTGCGCAY 1 cut(s) 186
FspBI CTAG 3 cut(s) 432, 876, 914
FspI TGCGCA 1 cut(s) 186
GlaI GCGC 1 cut(s) 186
GluI GCNGC 4 cut(s) 302, 684, 830, 891
GsaI CCCAGC 1 cut(s) 984
HaeIII GGCC 2 cut(s) 396, 1035
HapII CCGG 1 cut(s) 922
HhaI GCGC 1 cut(s) 187
Hin1II CATG 4 cut(s) 262, 503, 848, 947
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 3 cut(s) 296, 910, 925
HpaII CCGG 1 cut(s) 922
HphI GGTGA 5 cut(s) 83, 266, 304, 554, 787
Hpy166II GTNNAC 2 cut(s) 26, 242
Hpy188I TCNGA 6 cut(s) 390, 421, 530, 966, 996, 1059
Hpy188III TCNNGA 5 cut(s) 8, 695, 845, 914, 922
Hpy8I GTNNAC 2 cut(s) 26, 242
HpyAV CCTTC 6 cut(s) 457, 697, 701, 733, 772, 965
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 3 cut(s) 22, 121, 643
HpyF3I CTNAG 4 cut(s) 9, 65, 278, 1037
HpySE526I ACGT 3 cut(s) 22, 121, 643
Hsp92II CATG 4 cut(s) 262, 503, 848, 947
HspAI GCGC 1 cut(s) 185
Kpn2I TCCGGA 1 cut(s) 921
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 5 cut(s) 274, 385, 484, 697, 1008
Lsp1109I GCAGC 3 cut(s) 695, 841, 877
LweI GCATC 7 cut(s) 315, 799, 830, 844, 967, 1016, 1051
MabI ACCWGGT 1 cut(s) 631
MaeI CTAG 3 cut(s) 432, 876, 914
MaeII ACGT 3 cut(s) 22, 121, 643
MaeIII GTNAC 3 cut(s) 176, 254, 742
MalI GATC 5 cut(s) 276, 387, 486, 699, 1010
MboI GATC 5 cut(s) 274, 385, 484, 697, 1008
MboII GAAGA 3 cut(s) 208, 280, 299
MflI RGATCY 1 cut(s) 1008
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 5 cut(s) 203, 425, 532, 706, 1046
Mph1103I ATGCAT 1 cut(s) 1031
MroI TCCGGA 1 cut(s) 921
MroXI GAANNNNTTC 1 cut(s) 295
MseI TTAA 3 cut(s) 206, 219, 759
MslI CAYNNNNRTG 1 cut(s) 247
MspI CCGG 1 cut(s) 922
MspR9I CCNGG 2 cut(s) 316, 633
MvaI CCWGG 2 cut(s) 316, 633
NdeII GATC 5 cut(s) 274, 385, 484, 697, 1008
NlaIII CATG 4 cut(s) 262, 503, 848, 947
NlaIV GGNNCC 2 cut(s) 579, 1010
NmuCI GTSAC 3 cut(s) 176, 254, 742
NsbI TGCGCA 1 cut(s) 186
NsiI ATGCAT 1 cut(s) 1031
PagI TCATGA 1 cut(s) 844
PdmI GAANNNNTTC 1 cut(s) 295
PfeI GAWTC 3 cut(s) 296, 910, 925
PkrI GCNGC 4 cut(s) 303, 685, 831, 892
PpuMI RGGWCCY 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 168
Psp1406I AACGTT 1 cut(s) 643
Psp5II RGGWCCY 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 314, 631
PspFI CCCAGC 1 cut(s) 980
PspGI CCWGG 2 cut(s) 314, 631
PspN4I GGNNCC 2 cut(s) 579, 1010
PspPI GGNCC 2 cut(s) 59, 395
PspPPI RGGWCCY 1 cut(s) 59
PsrI GAACNNNNNNTAC 2 cut(s) 603, 635
PstI CTGCAG 1 cut(s) 831
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 1008
RsaI GTAC 4 cut(s) 27, 77, 408, 651
RsaNI GTAC 4 cut(s) 26, 76, 407, 650
RseI CAYNNNNRTG 1 cut(s) 247
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 3 cut(s) 206, 219, 759
SatI GCNGC 4 cut(s) 302, 684, 830, 891
Sau3AI GATC 5 cut(s) 274, 385, 484, 697, 1008
Sau96I GGNCC 2 cut(s) 59, 395
ScaI AGTACT 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 316, 633
SduI GDGCHC 1 cut(s) 168
SexAI ACCWGGT 1 cut(s) 631
SfaNI GCATC 7 cut(s) 315, 799, 830, 844, 967, 1016, 1051
SfcI CTRYAG 2 cut(s) 52, 827
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 247
Sse9I AATT 5 cut(s) 203, 425, 532, 706, 1046
SsiI CCGC 1 cut(s) 302
SspMI CTAG 3 cut(s) 432, 876, 914
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 2 cut(s) 314, 631
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 3 cut(s) 25, 124, 646
TaqI TCGA 2 cut(s) 168, 453
TasI AATT 5 cut(s) 203, 425, 532, 706, 1046
TatI WGTACW 2 cut(s) 25, 75
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 3 cut(s) 296, 910, 925
Tru1I TTAA 3 cut(s) 206, 219, 759
Tru9I TTAA 3 cut(s) 206, 219, 759
TscAI CASTG 5 cut(s) 198, 249, 556, 831, 865
TseFI GTSAC 3 cut(s) 176, 254, 742
TseI GCWGC 3 cut(s) 683, 829, 890
Tsp45I GTSAC 3 cut(s) 176, 254, 742
TspDTI ATGAA 3 cut(s) 327, 488, 826
TspRI CASTG 5 cut(s) 198, 249, 556, 831, 865
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 1 cut(s) 425
XbaI TCTAGA 1 cut(s) 913
XcmI CCANNNNNNNNNTGG 1 cut(s) 1019
XmnI GAANNNNTTC 1 cut(s) 295
XspI CTAG 3 cut(s) 432, 876, 914
ZrmI AGTACT 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.