Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001564

Physical Location & Seq

Genomic Coordinates Reverse (-)

3066954 .. 3067892

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g04780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTTTGGTCAAGTGGAGCTCATTCCAATTGACCATGGCCTTTGTTTGCCAGAAACTTTGGAGGACCCCTACTTTGAGTGGATTCATTGGCCTCAGGCTTCCATTCCTTTCACAGATGACGAGCTTGAGTACATAGAAATACTTGATCCACTTGAGGACTGTGAGATGTTGCGCAGGGAGCTGCCCATGATTCGAGAGGCTTGTCTCAGGGTTTTGGTTCTTTGCACCATTTTCCTGAAGGAGTCTGCTGCATATGGTCTCTGTCTTGCTGAAATAGGTGAGATGATGACCAGGGAATTTCGCAGTGGCGAGGAGGAACCCAGTGAACTTGAGATAATTTGTATGGAGGCGAGGAAGATGTTGGCAGAGAGGGAGGAGGTGCCGTCTCCCAAGGCTGATTCGGAAGATCAGGAGTTCCTGTTTGACATAGACTGTGAGGACACAGAGGAAGACTACACCTCCAAATTTGCAGCAGATGATTATCTGAACAGGTCATCATCCTTTCCATTTGCAAATGGGAGTGGGCATGGCCGCTCACTTCTCTCTAAACTTGAAGAAAGCATCGAGGAGGAAGAGGACAGTGAAGTGGAAGAACAAGAGGCATTGGCATATATGCCAACTCCAGAAAAGGTCCCAACCGTTTCAAAACTTTCTATGTCGCTGAAGAATACAGTTTTGGGAGAGAAGAGCCGCCTGAAGTATAAGGGTTCCAAACCAGAAAACGGGTACACGGCGAATACATCATCGGGGCACAGGAGTGCAAACGAGCAACTTCCTGCAAGCATGAGCTTTGTGAAGCTGGCTGACATGAGCGAGGATGAGTGGACCTTGTTTCTGGAGAAGTTTCAAGATCTGCTGTACCCGGCATTTGCCAAACGCAAATCTGTTACCCTAGGTCAGAGGCAGAGACAGAGGCTCGGCACTTCGTGCCAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004430 GO:0005488 GO:0005515 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019637 GO:0019899 GO:0019900 GO:0019901 GO:0030258 GO:0036211 GO:0043170 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0046486 GO:0046488 GO:0046777 GO:0046834 GO:0046854 GO:0052742 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PI3_PI4_kinase

Protein Analysis

313

Amino Acids

35.67

Weight (kDa)

4.45

Isoelectric Point (pI)

67.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI3_PI4_kinase	PF00454	6 - 91	2e-15	Phosphatidylinositol 3- and 4-kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13640 AT1G13640 AT1G26270 AT2G03890 AT2G03890
fragaria_vesca	FvH4_4g29190 FvH4_4g29190 FvH4_6g46200 FvH4_6g46200 FvH4_6g46200 FvH4_6g46200 FvH4_6g46200
malus_domestica	MD13G1055800.v1.1 MD16G1054900.v1.1 MD17G1066800.v1.1
prunus_persica	Prupe.1G295100_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1
pyrus_communis	pycom13g04940 pycom16g04780 pycom17g06720
rosa_chinensis	RchiOBHm_Chr2g0164641 RchiOBHm_Chr4g0437261
rosa_laevigata	RLG00000006453 RLG00000021473
rosa_multiflora	Rmu_sc0004339.1_g000020 Rmu_ssc0000076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00086410 Rroxscaffold_5G00378380
rosa_rugosa	Rorug02G0509500 Rorug04G0298800
rosa_samantha	Rh2AG577400 Rh2BG588600 Rh2CG559400 Rh2DG599200 Rh4AG353700 Rh4BG363500 Rh4CG377700 Rh4DG357600
rosa_wichuraiana	Rw2G047950 Rw4G031030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	379
AccBSI	CCGCTC	1 cut(s)	534
AciI	CCGC	2 cut(s)	532, 691
AclWI	GGATC	1 cut(s)	140
AcoI	YGGCCR	1 cut(s)	529
AcsI	RAATTY	2 cut(s)	296, 464
AcuI	CTGAAG	3 cut(s)	257, 683, 716
AdeI	CACNNNGTG	1 cut(s)	927
AfaI	GTAC	3 cut(s)	131, 728, 860
AfiI	CCNNNNNNNGG	1 cut(s)	722
AgsI	TTSAA	3 cut(s)	554, 645, 848
AjnI	CCWGG	1 cut(s)	290
AjuI	GAANNNNNNNTTGG	2 cut(s)	659, 691
AleI	CACNNNNGTG	1 cut(s)	756
AluBI	AGCT	5 cut(s)	19, 124, 181, 789, 799
AluI	AGCT	5 cut(s)	19, 124, 181, 789, 799
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	4 cut(s)	209, 263, 390, 901
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	3 cut(s)	37, 89, 529
ApeKI	GCWGC	3 cut(s)	181, 248, 470
ApoI	RAATTY	2 cut(s)	296, 464
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspA2I	CCTAGG	1 cut(s)	892
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	3 cut(s)	64, 631, 825
AsuC2I	CCSGG	1 cut(s)	863
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	3 cut(s)	64, 631, 825
AvrII	CCTAGG	1 cut(s)	892
AxyI	CCTNAGG	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	753
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	3 cut(s)	168, 235, 482
BceAI	ACGGC	2 cut(s)	367, 747
BciT130I	CCWGG	1 cut(s)	292
BcnI	CCSGG	1 cut(s)	863
BcoDI	GTCTC	4 cut(s)	209, 263, 390, 901
BfaI	CTAG	1 cut(s)	893
BglII	AGATCT	1 cut(s)	850
BisI	GCNGC	5 cut(s)	182, 249, 471, 532, 691
BlnI	CCTAGG	1 cut(s)	892
BlsI	GCNGC	5 cut(s)	183, 250, 472, 533, 692
Bme1390I	CCNGG	2 cut(s)	292, 863
Bme18I	GGWCC	3 cut(s)	64, 631, 825
BmgT120I	GGNCC	3 cut(s)	64, 631, 825
BmiI	GGNNCC	5 cut(s)	66, 318, 381, 633, 709
BmrFI	CCNGG	2 cut(s)	292, 863
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	570
BmuI	ACTGGG	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	456
BpmI	CTGGAG	2 cut(s)	606, 857
BpuEI	CTTGAG	3 cut(s)	146, 173, 350
BpuMI	CCSGG	1 cut(s)	863
BsaBI	GATNNNNATC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	4 cut(s)	34, 291, 390, 892
BsaXI	ACNNNNNCTCC	6 cut(s)	368, 398, 404, 434, 443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	722
Bse1I	ACTGG	2 cut(s)	321, 931
Bse21I	CCTNAGG	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	4 cut(s)	34, 291, 390, 892
BseGI	GGATG	2 cut(s)	497, 823
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	722
BseMII	CTCAG	2 cut(s)	107, 220
BseNI	ACTGG	2 cut(s)	321, 931
BseRI	GAGGAG	3 cut(s)	326, 389, 581
BseSI	GKGCMC	1 cut(s)	753
BseXI	GCAGC	3 cut(s)	168, 235, 482
BshFI	GGCC	3 cut(s)	39, 91, 531
BshNI	GGYRCC	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	863
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	722
BsmAI	GTCTC	4 cut(s)	209, 263, 390, 901
BsmBI	CGTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	3 cut(s)	39, 91, 531
Bso31I	GGTCTC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	21, 753
Bsp143I	GATC	3 cut(s)	145, 406, 850
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	2 cut(s)	532, 691
BspANI	GGCC	3 cut(s)	39, 91, 531
BspCNI	CTCAG	2 cut(s)	106, 219
BspLI	GGNNCC	5 cut(s)	66, 318, 381, 633, 709
BspPI	GGATC	1 cut(s)	140
BspQI	GCTCTTC	1 cut(s)	680
BspT107I	GGYRCC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	263
BsrBI	CCGCTC	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	321, 931
BssECI	CCNNGG	4 cut(s)	34, 291, 390, 892
BssMI	GATC	3 cut(s)	145, 406, 850
BssT1I	CCWWGG	3 cut(s)	34, 390, 892
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	5 cut(s)	161, 434, 581, 640, 673
Bst6I	CTCTTC	2 cut(s)	567, 680
BstAPI	GCANNNNNTGC	1 cut(s)	927
BstC8I	GCNNGC	2 cut(s)	781, 801
BstDEI	CTNAG	2 cut(s)	93, 206
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	497, 823
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	3 cut(s)	148, 409, 853
BstMAI	GTCTC	4 cut(s)	209, 263, 390, 901
BstMBI	GATC	3 cut(s)	145, 406, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 927
BstNI	CCWGG	1 cut(s)	292
BstSCI	CCNGG	2 cut(s)	290, 861
BstSLI	GKGCMC	1 cut(s)	753
BstV1I	GCAGC	3 cut(s)	168, 235, 482
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	850
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	3 cut(s)	39, 91, 531
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	497, 823
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	3 cut(s)	310, 328, 586
Cac8I	GCNNGC	2 cut(s)	781, 801
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	3 cut(s)	64, 631, 825
Csp6I	GTAC	3 cut(s)	130, 727, 859
CviAII	CATG	5 cut(s)	35, 187, 527, 784, 808
CviQI	GTAC	3 cut(s)	130, 727, 859
DdeI	CTNAG	2 cut(s)	93, 206
DpnI	GATC	3 cut(s)	147, 408, 852
DpnII	GATC	3 cut(s)	145, 406, 850
DraIII	CACNNNGTG	1 cut(s)	927
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	2 cut(s)	567, 680
EarI	CTCTTC	2 cut(s)	567, 680
Ecl136II	GAGCTC	1 cut(s)	19
Eco130I	CCWWGG	3 cut(s)	34, 390, 892
Eco24I	GRGCYC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	263
Eco47I	GGWCC	3 cut(s)	64, 631, 825
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	3 cut(s)	257, 683, 716
Eco81I	CCTNAGG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	19
EcoO109I	RGGNCCY	2 cut(s)	64, 631
EcoRII	CCWGG	1 cut(s)	290
EcoT14I	CCWWGG	3 cut(s)	34, 390, 892
EcoT38I	GRGCYC	1 cut(s)	21
ErhI	CCWWGG	3 cut(s)	34, 390, 892
Esp3I	CGTCTC	1 cut(s)	390
FaeI	CATG	5 cut(s)	38, 190, 530, 787, 811
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	5 cut(s)	34, 186, 526, 783, 807
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	5 cut(s)	182, 249, 471, 532, 691
FokI	GGATG	2 cut(s)	484, 830
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	5 cut(s)	182, 249, 471, 532, 691
FspBI	CTAG	1 cut(s)	893
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	5 cut(s)	182, 249, 471, 532, 691
GsuI	CTGGAG	2 cut(s)	606, 857
HaeIII	GGCC	3 cut(s)	39, 91, 531
HapII	CCGG	1 cut(s)	863
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	5 cut(s)	38, 190, 530, 787, 811
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HinfI	GANTC	4 cut(s)	82, 190, 242, 398
HpaII	CCGG	1 cut(s)	863
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	3 cut(s)	326, 729, 825
Hpy188I	TCNGA	3 cut(s)	403, 486, 900
Hpy188III	TCNNGA	6 cut(s)	194, 235, 410, 623, 836, 848
Hpy8I	GTNNAC	3 cut(s)	326, 729, 825
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	5 cut(s)	161, 434, 581, 640, 673
HpyCH4V	TGCA	6 cut(s)	225, 251, 470, 512, 761, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 927
HpyF3I	CTNAG	2 cut(s)	93, 206
Hsp92II	CATG	5 cut(s)	38, 190, 530, 787, 811
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	145, 406, 850
LguI	GCTCTTC	1 cut(s)	680
LmnI	GCTCC	2 cut(s)	16, 178
Lsp1109I	GCAGC	3 cut(s)	168, 235, 482
LweI	GCATC	1 cut(s)	570
MaeI	CTAG	1 cut(s)	893
MaeIII	GTNAC	1 cut(s)	886
MalI	GATC	3 cut(s)	147, 408, 852
MbiI	CCGCTC	1 cut(s)	534
MboI	GATC	3 cut(s)	145, 406, 850
MboII	GAAGA	8 cut(s)	367, 416, 461, 566, 584, 602, 676, 697
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	850
MhlI	GDGCHC	2 cut(s)	21, 753
MluCI	AATT	4 cut(s)	27, 296, 336, 464
MlyI	GAGTC	1 cut(s)	251
MslI	CAYNNNNRTG	1 cut(s)	756
MspI	CCGG	1 cut(s)	863
MspR9I	CCNGG	2 cut(s)	292, 863
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	178, 927
NciI	CCSGG	1 cut(s)	863
NcoI	CCATGG	1 cut(s)	34
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	3 cut(s)	145, 406, 850
NlaIII	CATG	5 cut(s)	38, 190, 530, 787, 811
NlaIV	GGNNCC	5 cut(s)	66, 318, 381, 633, 709
NmeAIII	GCCGAG	1 cut(s)	897
NsbI	TGCGCA	1 cut(s)	173
OliI	CACNNNNGTG	1 cut(s)	756
PciSI	GCTCTTC	1 cut(s)	680
PfeI	GAWTC	3 cut(s)	82, 190, 398
PkrI	GCNGC	5 cut(s)	183, 250, 472, 533, 692
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PpuMI	RGGWCCY	2 cut(s)	64, 631
Psp124BI	GAGCTC	1 cut(s)	21
Psp5II	RGGWCCY	2 cut(s)	64, 631
Psp6I	CCWGG	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	5 cut(s)	66, 318, 381, 633, 709
PspPI	GGNCC	3 cut(s)	64, 631, 825
PspPPI	RGGWCCY	2 cut(s)	64, 631
PsuI	RGATCY	1 cut(s)	850
RsaI	GTAC	3 cut(s)	131, 728, 860
RsaNI	GTAC	3 cut(s)	130, 727, 859
RseI	CAYNNNNRTG	1 cut(s)	756
SacI	GAGCTC	1 cut(s)	21
SapI	GCTCTTC	1 cut(s)	680
SatI	GCNGC	5 cut(s)	182, 249, 471, 532, 691
Sau3AI	GATC	3 cut(s)	145, 406, 850
Sau96I	GGNCC	3 cut(s)	64, 631, 825
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	292, 863
SduI	GDGCHC	2 cut(s)	21, 753
SfaNI	GCATC	1 cut(s)	570
SinI	GGWCC	3 cut(s)	64, 631, 825
SmiMI	CAYNNNNRTG	1 cut(s)	756
SmlI	CTYRAG	3 cut(s)	125, 152, 329
SmoI	CTYRAG	3 cut(s)	125, 152, 329
Sse9I	AATT	4 cut(s)	27, 296, 336, 464
SsiI	CCGC	2 cut(s)	532, 691
SspMI	CTAG	1 cut(s)	893
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	290, 861
StyI	CCWWGG	3 cut(s)	34, 390, 892
TaaI	ACNGT	5 cut(s)	161, 434, 581, 640, 673
TaqI	TCGA	2 cut(s)	193, 564
TasI	AATT	4 cut(s)	27, 296, 336, 464
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	2 cut(s)	534, 693
TfiI	GAWTC	3 cut(s)	82, 190, 398
TscAI	CASTG	3 cut(s)	310, 328, 586
TseI	GCWGC	3 cut(s)	181, 248, 470
TspDTI	ATGAA	1 cut(s)	74
TspRI	CASTG	3 cut(s)	310, 328, 586
VpaK11BI	GGWCC	3 cut(s)	64, 631, 825
XapI	RAATTY	2 cut(s)	296, 464
XmaJI	CCTAGG	1 cut(s)	892
XspI	CTAG	1 cut(s)	893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.