Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001564

Physical Location & Seq

Genomic Coordinates Forward (+)

47377465 .. 47378707

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0298800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCCTGGGCTAACGATTGGAGACACTATCCCCAACCTCGAAGCTGAGAGCACCATAGGAAAGATCAGGCTCCATGACTACATCGGCAATAGCTGGGCCATCGTTTTCTCTCACCCAGGTGATTTCACCCCGGTCTGCACCACCGAGCTTGGGAAGATGGCCGAGTACTCTAAGGTGTTCAAGGAGAAAGGAGTGAAGCTGCTGGGTTTGTCCTGCGACGACGTCTCGTCTCATCTGGAGTGGATCAAGGACATTGAAGCCTACAGTGCCGGGTGCAAGGTGGACTATCCAATTATGGCCGATCCGAAGCGAGAGATCATCAAGCAACTCAACATGGTGGATCCCGAAGAGAAAGACTCCTCCGGCAACAACCTACCTTCCCGCGCTCTGCATATTGTTGGCCCTGACAAGAAGGTGGTGTTGAGCTTTTTGTATCCGGCGACCACTGGCCGGAACATGGATGAGGTGGTGAGGGTGCTGGAGTCGCTGCAGAAGGCGAAGAAGCACAAGATTGCTACTCCGGCAAACTGGAAGCCTGGAGACGATGTTGTGATATCTCCGGGTGTGTCGCAGGAGGAGGCCAAAAGGATGTTCCCGCAGGGCTACAAGACCAAGGACCTTCCTTCCAAGAAAGAGTACCTGCGCTTTACTAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004430 GO:0005488 GO:0005515 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019637 GO:0019899 GO:0019900 GO:0019901 GO:0030258 GO:0036211 GO:0043170 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0046486 GO:0046488 GO:0046777 GO:0046834 GO:0046854 GO:0052742 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PI3_PI4_kinase

Protein Analysis

219

Amino Acids

24.38

Weight (kDa)

6.96

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	6 - 140	8.9e-29	AhpC/TSA family
Redoxin	PF08534	7 - 153	1.1e-12	Redoxin
1-cysPrx_C	PF10417	163 - 199	1.7e-11	C-terminal domain of 1-Cys peroxiredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13640 AT1G13640 AT1G26270 AT2G03890 AT2G03890
fragaria_vesca	FvH4_4g29190 FvH4_4g29190 FvH4_6g46200 FvH4_6g46200 FvH4_6g46200 FvH4_6g46200 FvH4_6g46200
malus_domestica	MD13G1055800.v1.1 MD16G1054900.v1.1 MD17G1066800.v1.1
prunus_persica	Prupe.1G295100_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1 Prupe.3G247900_v2.0.a1
pyrus_communis	pycom13g04940 pycom16g04780 pycom17g06720
rosa_chinensis	RchiOBHm_Chr2g0164641 RchiOBHm_Chr4g0437261
rosa_laevigata	RLG00000006453 RLG00000021473
rosa_multiflora	Rmu_sc0004339.1_g000020 Rmu_ssc0000076.1_g000009
rosa_roxburghii	Rroxscaffold_2G00086410 Rroxscaffold_5G00378380
rosa_rugosa	Rorug02G0509500 Rorug04G0298800
rosa_samantha	Rh2AG577400 Rh2BG588600 Rh2CG559400 Rh2DG599200 Rh4AG353700 Rh4BG363500 Rh4CG377700 Rh4DG357600
rosa_wichuraiana	Rw2G047950 Rw4G031030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
Acc36I	ACCTGC	1 cut(s)	648
AccII	CGCG	1 cut(s)	384
AciI	CCGC	2 cut(s)	382, 596
AclWI	GGATC	4 cut(s)	251, 296, 335, 348
AcoI	YGGCCR	3 cut(s)	159, 297, 448
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	167, 638
AfiI	CCNNNNNNNGG	3 cut(s)	150, 450, 457
AgsI	TTSAA	2 cut(s)	181, 257
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	3 cut(s)	4, 115, 535
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AleI	CACNNNNGTG	1 cut(s)	117
AluBI	AGCT	5 cut(s)	44, 93, 148, 199, 426
AluI	AGCT	5 cut(s)	44, 93, 148, 199, 426
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	4 cut(s)	15, 229, 234, 534
AlwI	GGATC	4 cut(s)	251, 296, 335, 348
AoxI	GGCC	6 cut(s)	96, 159, 297, 400, 448, 579
ApeKI	GCWGC	2 cut(s)	199, 487
AspLEI	GCGC	2 cut(s)	386, 645
AspS9I	GGNCC	3 cut(s)	96, 401, 616
AsuC2I	CCSGG	3 cut(s)	131, 271, 561
AsuHPI	GGTGA	4 cut(s)	104, 118, 131, 481
AvaII	GGWCC	1 cut(s)	616
BamHI	GGATCC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	186, 474
BccI	CCATC	2 cut(s)	107, 151
BciT130I	CCWGG	3 cut(s)	6, 117, 537
BciVI	GTATCC	1 cut(s)	444
BcnI	CCSGG	3 cut(s)	131, 271, 561
BcoDI	GTCTC	4 cut(s)	15, 229, 234, 534
BfmI	CTRYAG	2 cut(s)	262, 488
BfuAI	ACCTGC	1 cut(s)	648
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	2 cut(s)	200, 488
BlsI	GCNGC	2 cut(s)	201, 489
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	6 cut(s)	6, 117, 131, 271, 537, 561
Bme18I	GGWCC	1 cut(s)	616
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgT120I	GGNCC	3 cut(s)	96, 401, 616
BmiI	GGNNCC	2 cut(s)	71, 342
BmrFI	CCNGG	6 cut(s)	6, 117, 131, 271, 537, 561
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BpmI	CTGGAG	3 cut(s)	257, 500, 558
BpuMI	CCSGG	3 cut(s)	131, 271, 561
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	4 cut(s)	5, 115, 129, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 450, 457
Bse1I	ACTGG	2 cut(s)	451, 533
BseBI	CCWGG	3 cut(s)	6, 117, 537
BseDI	CCNNGG	4 cut(s)	5, 115, 129, 612
BseGI	GGATG	2 cut(s)	466, 594
BseLI	CCNNNNNNNGG	3 cut(s)	150, 450, 457
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	451, 533
BseRI	GAGGAG	2 cut(s)	349, 590
BseXI	GCAGC	2 cut(s)	186, 474
BseYI	CCCAGC	2 cut(s)	93, 202
BsgI	GTGCAG	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	6 cut(s)	98, 161, 299, 402, 450, 581
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	7 cut(s)	131, 270, 363, 437, 451, 521, 560
BslI	CCNNNNNNNGG	3 cut(s)	150, 450, 457
BsmAI	GTCTC	4 cut(s)	15, 229, 234, 534
BsmBI	CGTCTC	3 cut(s)	229, 234, 534
BsnI	GGCC	6 cut(s)	98, 161, 299, 402, 450, 581
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	5 cut(s)	63, 243, 301, 315, 340
BspACI	CCGC	2 cut(s)	382, 596
BspANI	GGCC	6 cut(s)	98, 161, 299, 402, 450, 581
BspCNI	CTCAG	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	2 cut(s)	71, 342
BspMAI	CTGCAG	1 cut(s)	492
BspMI	ACCTGC	1 cut(s)	648
BspPI	GGATC	4 cut(s)	251, 296, 335, 348
BsrI	ACTGG	2 cut(s)	451, 533
BssECI	CCNNGG	4 cut(s)	5, 115, 129, 612
BssMI	GATC	5 cut(s)	63, 243, 301, 315, 340
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	612
Bst2UI	CCWGG	3 cut(s)	6, 117, 537
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	342
BstACI	GRCGYC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	45, 171
BstF5I	GGATG	2 cut(s)	466, 594
BstFNI	CGCG	1 cut(s)	384
BstHHI	GCGC	2 cut(s)	386, 645
BstKTI	GATC	5 cut(s)	66, 246, 304, 318, 343
BstMAI	GTCTC	4 cut(s)	15, 229, 234, 534
BstMBI	GATC	5 cut(s)	63, 243, 301, 315, 340
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 484, 521
BstNI	CCWGG	3 cut(s)	6, 117, 537
BstSCI	CCNGG	6 cut(s)	4, 115, 129, 269, 535, 559
BstSFI	CTRYAG	2 cut(s)	262, 488
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	186, 474
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	6 cut(s)	98, 161, 299, 402, 450, 581
BtsCI	GGATG	2 cut(s)	466, 594
BtsIMutI	CAGTG	2 cut(s)	271, 444
BveI	ACCTGC	1 cut(s)	648
CfoI	GCGC	2 cut(s)	386, 645
Cfr13I	GGNCC	3 cut(s)	96, 401, 616
Csp6I	GTAC	2 cut(s)	166, 637
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	3 cut(s)	74, 334, 457
CviQI	GTAC	2 cut(s)	166, 637
DdeI	CTNAG	2 cut(s)	45, 171
DpnI	GATC	5 cut(s)	65, 245, 303, 317, 342
DpnII	GATC	5 cut(s)	63, 243, 301, 315, 340
DriI	GACNNNNNGTC	1 cut(s)	226
EaeI	YGGCCR	3 cut(s)	159, 297, 448
Eam1104I	CTCTTC	1 cut(s)	342
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	612
Eco32I	GATATC	1 cut(s)	555
Eco47I	GGWCC	1 cut(s)	616
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRII	CCWGG	3 cut(s)	4, 115, 535
EcoRV	GATATC	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	612
ErhI	CCWWGG	1 cut(s)	612
Esp3I	CGTCTC	3 cut(s)	229, 234, 534
FaeI	CATG	3 cut(s)	77, 337, 460
FaiI	YATR	6 cut(s)	56, 75, 296, 335, 393, 458
FatI	CATG	3 cut(s)	73, 333, 456
FauI	CCCGC	2 cut(s)	389, 603
Fnu4HI	GCNGC	2 cut(s)	200, 488
FokI	GGATG	2 cut(s)	473, 601
Fsp4HI	GCNGC	2 cut(s)	200, 488
GlaI	GCGC	2 cut(s)	385, 644
GluI	GCNGC	2 cut(s)	200, 488
GsaI	CCCAGC	2 cut(s)	97, 206
GsuI	CTGGAG	3 cut(s)	257, 500, 558
HaeIII	GGCC	6 cut(s)	98, 161, 299, 402, 450, 581
HapII	CCGG	7 cut(s)	131, 270, 363, 437, 451, 521, 560
HhaI	GCGC	2 cut(s)	386, 645
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	77, 337, 460
Hin6I	GCGC	2 cut(s)	384, 643
HinP1I	GCGC	2 cut(s)	384, 643
HinfI	GANTC	2 cut(s)	356, 482
HpaII	CCGG	7 cut(s)	131, 270, 363, 437, 451, 521, 560
HphI	GGTGA	4 cut(s)	104, 118, 131, 481
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	2 cut(s)	236, 344
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	2 cut(s)	221, 224
HpyAV	CCTTC	5 cut(s)	387, 406, 487, 629, 633
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	138, 276, 391, 490
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 484, 521
HpyF3I	CTNAG	2 cut(s)	45, 171
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	77, 337, 460
HspAI	GCGC	2 cut(s)	384, 643
Kzo9I	GATC	5 cut(s)	63, 243, 301, 315, 340
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	2 cut(s)	186, 474
MaeII	ACGT	1 cut(s)	222
MalI	GATC	5 cut(s)	65, 245, 303, 317, 342
MboI	GATC	5 cut(s)	63, 243, 301, 315, 340
MboII	GAAGA	3 cut(s)	166, 359, 511
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	350, 491
MnlI	CCTC	6 cut(s)	47, 370, 457, 465, 568, 571
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	7 cut(s)	131, 270, 363, 437, 451, 521, 560
MspR9I	CCNGG	6 cut(s)	6, 117, 131, 271, 537, 561
MvaI	CCWGG	3 cut(s)	6, 117, 537
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	266, 484, 521
NciI	CCSGG	3 cut(s)	131, 271, 561
NdeII	GATC	5 cut(s)	63, 243, 301, 315, 340
NlaIII	CATG	3 cut(s)	77, 337, 460
NlaIV	GGNNCC	2 cut(s)	71, 342
NmeAIII	GCCGAG	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	117
PflFI	GACNNNGTC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	201, 489
PleI	GAGTC	2 cut(s)	350, 490
PpsI	GAGTC	2 cut(s)	350, 490
PpuMI	RGGWCCY	1 cut(s)	616
Psp5II	RGGWCCY	1 cut(s)	616
Psp6I	CCWGG	3 cut(s)	4, 115, 535
PspFI	CCCAGC	2 cut(s)	93, 202
PspGI	CCWGG	3 cut(s)	4, 115, 535
PspN4I	GGNNCC	2 cut(s)	71, 342
PspPI	GGNCC	3 cut(s)	96, 401, 616
PspPPI	RGGWCCY	1 cut(s)	616
PstI	CTGCAG	1 cut(s)	492
PsuI	RGATCY	1 cut(s)	340
PsyI	GACNNNGTC	1 cut(s)	221
RsaI	GTAC	2 cut(s)	167, 638
RsaNI	GTAC	2 cut(s)	166, 637
RseI	CAYNNNNRTG	1 cut(s)	117
SatI	GCNGC	2 cut(s)	200, 488
Sau3AI	GATC	5 cut(s)	63, 243, 301, 315, 340
Sau96I	GGNCC	3 cut(s)	96, 401, 616
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	2 cut(s)	350, 491
ScrFI	CCNGG	6 cut(s)	6, 117, 131, 271, 537, 561
SduI	GDGCHC	1 cut(s)	53
SfcI	CTRYAG	2 cut(s)	262, 488
SinI	GGWCC	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	291
SsiI	CCGC	2 cut(s)	382, 596
StyD4I	CCNGG	6 cut(s)	4, 115, 129, 269, 535, 559
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	39
TasI	AATT	1 cut(s)	291
TatI	WGTACW	1 cut(s)	165
TscAI	CASTG	2 cut(s)	271, 451
TseI	GCWGC	2 cut(s)	199, 487
TspRI	CASTG	2 cut(s)	271, 451
Tth111I	GACNNNGTC	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	616
ZraI	GACGTC	1 cut(s)	223
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.