Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0015676

Physical Location & Seq

Genomic Coordinates Forward (+)

75204474 .. 75206083

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G047920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCTGAAGATTATTGCAAGCTTCGTACTAGGGTTTCTTTTTGTGAGGCATGCCGTAGGAGACTTCACTGCACATGCTGATCATAAAGAAGAAGGGTTATTAATGACTGGAAAACATTCTGTATTGCCTGATGAAAAGGAACTAATTGATGAAATCTCAAAAATCGCTGGGTCAAGGATTATAGGGATCGGAGGAAGGAAGATGGCGGCACAGAAAGTAGTGCTGAGAAATGGAGAGCTTACTCCTACTACTACTTCATCAAAGAATTCAGGAAAGGACGGTAATAAGGCTTCAAAGTACAACTTCAACGGAAGACCACAAATCAAATTGAACCAAAAGGGTGGGATCAAAATATTGAAAACTGCTGCCAGCAGTACGAGCTGCAACATTGGAATTCCTAGTGATGAGCCAACAAAACACTCTCAAGTAGATGAAGAAACTAGACGGCTTCTTGAAGCAGAAAGAGAGATAGTAAATCTGATGCATAAAGATTATAAGGGATCCTCCGGAGGGAGTATGGGTCGCCGCAAGCCACCCATACACAACCAAGAGCCACAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.45

Weight (kDa)

9.62

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46170 FvH4_6g46170
malus_domestica	MD09G1076400.v1.1 MD09G1076500.v1.1 MD17G1067000.v1.1
prunus_persica	Prupe.3G247600_v2.0.a1
rosa_laevigata	RLG00000021470
rosa_multiflora	Rmu_sc0000946.1_g000003 Rmu_ssc0000076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00086450
rosa_rugosa	Rorug02G0509500
rosa_samantha	Rh2AG577100 Rh2BG588200 Rh2CG559000 Rh2DG598800
rosa_wichuraiana	Rw2G047920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AccIII	TCCGGA	1 cut(s)	506
AciI	CCGC	2 cut(s)	206, 526
AclWI	GGATC	4 cut(s)	194, 353, 495, 508
AcsI	RAATTY	2 cut(s)	265, 393
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	3 cut(s)	27, 299, 376
AfiI	CCNNNNNNNGG	1 cut(s)	510
AgsI	TTSAA	5 cut(s)	294, 307, 331, 358, 455
AluBI	AGCT	3 cut(s)	21, 238, 381
AluI	AGCT	3 cut(s)	21, 238, 381
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	4 cut(s)	194, 353, 495, 508
Aor13HI	TCCGGA	1 cut(s)	506
ApeKI	GCWGC	2 cut(s)	365, 381
ApoI	RAATTY	2 cut(s)	265, 393
AseI	ATTAAT	1 cut(s)	101
Asp700I	GAANNNNTTC	1 cut(s)	115
BamHI	GGATCC	1 cut(s)	500
BarI	GAAGNNNNNNTAC	2 cut(s)	274, 306
BbsI	GAAGAC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	352, 368
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	2 cut(s)	38, 461
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	3 cut(s)	29, 399, 441
BisI	GCNGC	4 cut(s)	207, 366, 382, 526
BlsI	GCNGC	4 cut(s)	208, 367, 383, 527
BmiI	GGNNCC	1 cut(s)	502
BmsI	GCATC	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	408
BsaWI	WCCGGW	1 cut(s)	506
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	510
Bse1I	ACTGG	1 cut(s)	112
BseAI	TCCGGA	1 cut(s)	506
BseLI	CCNNNNNNNGG	1 cut(s)	510
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	352, 368
BseYI	CCCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	507
BslI	CCNNNNNNNGG	1 cut(s)	510
BsmAI	GTCTC	1 cut(s)	54
Bsp13I	TCCGGA	1 cut(s)	506
Bsp143I	GATC	4 cut(s)	79, 186, 345, 500
BspACI	CCGC	2 cut(s)	206, 526
BspCNI	CTCAG	1 cut(s)	216
BspEI	TCCGGA	1 cut(s)	506
BspLI	GGNNCC	1 cut(s)	502
BspPI	GGATC	4 cut(s)	194, 353, 495, 508
BsrI	ACTGG	1 cut(s)	112
BssMI	GATC	4 cut(s)	79, 186, 345, 500
Bst4CI	ACNGT	1 cut(s)	281
BstC8I	GCNNGC	4 cut(s)	19, 51, 370, 530
BstDEI	CTNAG	1 cut(s)	224
BstKTI	GATC	4 cut(s)	82, 189, 348, 503
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	4 cut(s)	79, 186, 345, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNSI	RCATGY	2 cut(s)	53, 77
BstV1I	GCAGC	2 cut(s)	352, 368
BstV2I	GAAGAC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	500
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	500
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	4 cut(s)	19, 51, 370, 530
Csp6I	GTAC	3 cut(s)	26, 298, 375
CviAII	CATG	2 cut(s)	50, 74
CviJI	RGCY	8 cut(s)	21, 238, 290, 381, 409, 448, 532, 553
CviKI_1	RGCY	8 cut(s)	21, 238, 290, 381, 409, 448, 532, 553
CviQI	GTAC	3 cut(s)	26, 298, 375
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	4 cut(s)	81, 188, 347, 502
DpnII	GATC	4 cut(s)	79, 186, 345, 500
Eco57I	CTGAAG	1 cut(s)	26
EcoRI	GAATTC	2 cut(s)	265, 393
EcoT22I	ATGCAT	1 cut(s)	486
FaeI	CATG	2 cut(s)	53, 77
FaiI	YATR	8 cut(s)	51, 75, 84, 182, 486, 495, 518, 539
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FatI	CATG	2 cut(s)	49, 73
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	4 cut(s)	207, 366, 382, 526
Fsp4HI	GCNGC	4 cut(s)	207, 366, 382, 526
FspBI	CTAG	3 cut(s)	29, 399, 441
GluI	GCNGC	4 cut(s)	207, 366, 382, 526
GsaI	CCCAGC	1 cut(s)	171
HapII	CCGG	1 cut(s)	507
Hin1II	CATG	2 cut(s)	53, 77
HindIII	AAGCTT	1 cut(s)	19
HpaII	CCGG	1 cut(s)	507
Hpy188I	TCNGA	2 cut(s)	191, 480
Hpy188III	TCNNGA	3 cut(s)	270, 452, 507
HpyAV	CCTTC	2 cut(s)	86, 189
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	4 cut(s)	17, 71, 384, 484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	53, 77
Kpn2I	TCCGGA	1 cut(s)	506
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	79, 186, 345, 500
LpnPI	CCDG	6 cut(s)	93, 141, 153, 255, 382, 520
Lsp1109I	GCAGC	2 cut(s)	352, 368
LweI	GCATC	1 cut(s)	471
MaeI	CTAG	3 cut(s)	29, 399, 441
MalI	GATC	4 cut(s)	81, 188, 347, 502
MboI	GATC	4 cut(s)	79, 186, 345, 500
MboII	GAAGA	5 cut(s)	19, 101, 211, 324, 446
MflI	RGATCY	1 cut(s)	500
MluCI	AATT	4 cut(s)	144, 265, 326, 393
MnlI	CCTC	4 cut(s)	39, 185, 503, 514
Mph1103I	ATGCAT	1 cut(s)	486
MroI	TCCGGA	1 cut(s)	506
MroXI	GAANNNNTTC	1 cut(s)	115
MseI	TTAA	1 cut(s)	101
MspI	CCGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	378
NdeII	GATC	4 cut(s)	79, 186, 345, 500
NlaIII	CATG	2 cut(s)	53, 77
NlaIV	GGNNCC	1 cut(s)	502
NsiI	ATGCAT	1 cut(s)	486
NspI	RCATGY	2 cut(s)	53, 77
PaeI	GCATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	115
PkrI	GCNGC	4 cut(s)	208, 367, 383, 527
PshBI	ATTAAT	1 cut(s)	101
PsiI	TTATAA	1 cut(s)	495
PspFI	CCCAGC	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	500
RsaI	GTAC	3 cut(s)	27, 299, 376
RsaNI	GTAC	3 cut(s)	26, 298, 375
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	4 cut(s)	207, 366, 382, 526
Sau3AI	GATC	4 cut(s)	79, 186, 345, 500
SetI	ASST	3 cut(s)	23, 240, 383
SfaNI	GCATC	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	4 cut(s)	144, 265, 326, 393
SsiI	CCGC	2 cut(s)	206, 526
SspI	AATATT	1 cut(s)	354
SspMI	CTAG	3 cut(s)	29, 399, 441
TaaI	ACNGT	1 cut(s)	281
TasI	AATT	4 cut(s)	144, 265, 326, 393
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	2 cut(s)	209, 528
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	2 cut(s)	365, 381
TspDTI	ATGAA	4 cut(s)	147, 165, 246, 447
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	101
XapI	RAATTY	2 cut(s)	265, 393
XceI	RCATGY	2 cut(s)	53, 77
XmnI	GAANNNNTTC	1 cut(s)	115
XspI	CTAG	3 cut(s)	29, 399, 441
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.