Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017704

Physical Location & Seq

Genomic Coordinates Reverse (-)

36220700 .. 36221570

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47951.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTTCAAAGCTGGACAGTGTAACGTACTTGTTTGTACTAATTTGGCAAGTCGAGGATTGGATATCCCATCACTGGATATGGTTATCAATTATAATGTGCCTGCGAGTCCTAAGAATCACTTATTGGGAAAAAGTTACCAGAACATCGAGCCACAGTTGAAGAAGTCATGCAACTTTGTGAAAGTGCAAAGAAGCCACAAGATTGGTGACCAAGAAAATAAAAGAGAGTGGACAGAAGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

82

Amino Acids

9.23

Weight (kDa)

8.5

Isoelectric Point (pI)

60.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	2 - 39	2.7e-11	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47951 FvH4_6g52560
rosa_chinensis	RchiOBHm_Chr2g0149041
rosa_multiflora	Rmu_co8503557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121560
rosa_samantha	Rh1CG077300 Rh2BG095800 Rh2CG097700 Rh4DG259600 Rh5AG391900 Rh5DG408500 Rh7BG305700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
AfaI	GTAC	2 cut(s)	27, 37
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	7, 160
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	218
BccI	CCATC	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	18, 156
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	111
BstEII	GGTNACC	1 cut(s)	206
BstPI	GGTNACC	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	203
BtsIMutI	CAGTG	2 cut(s)	23, 71
Cac8I	GCNNGC	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	26, 36
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	3 cut(s)	11, 151, 195
CviKI_1	RGCY	3 cut(s)	11, 151, 195
CviQI	GTAC	2 cut(s)	26, 36
DdeI	CTNAG	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco32I	GATATC	1 cut(s)	64
Eco91I	GGTNACC	1 cut(s)	206
EcoO65I	GGTNACC	1 cut(s)	206
EcoRV	GATATC	1 cut(s)	64
FaeI	CATG	1 cut(s)	171
FaiI	YATR	3 cut(s)	80, 93, 169
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	1 cut(s)	167
Hin1II	CATG	1 cut(s)	171
HinfI	GANTC	2 cut(s)	106, 115
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	231
Hpy8I	GTNNAC	1 cut(s)	231
HpyCH4III	ACNGT	2 cut(s)	18, 156
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	171, 187
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	171
LpnPI	CCDG	3 cut(s)	59, 114, 152
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	3 cut(s)	20, 134, 206
MboII	GAAGA	1 cut(s)	172
MluCI	AATT	2 cut(s)	40, 88
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	115
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PsiI	TTATAA	1 cut(s)	93
PspEI	GGTNACC	1 cut(s)	206
RsaI	GTAC	2 cut(s)	27, 37
RsaNI	GTAC	2 cut(s)	26, 36
SchI	GAGTC	1 cut(s)	115
SetI	ASST	2 cut(s)	13, 27
Sse9I	AATT	2 cut(s)	40, 88
TaaI	ACNGT	2 cut(s)	18, 156
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	52, 147
TasI	AATT	2 cut(s)	40, 88
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	115
TscAI	CASTG	2 cut(s)	23, 78
TseFI	GTSAC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	206
TspRI	CASTG	2 cut(s)	23, 78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.