Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8503557.1

Orthogroup ID

OG0017704

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2907

Gene Structure 2907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8503557.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atggatcaccgtcggatctgtgccaacattatgcgtaccgtagctatggagttgtctgttgcgacacccggacgcctccttcatcatctgcgtgacacaaagggattttctattcgcacagtgaaatatctggttttagacgaggcagacaggctgcttggtgatgaatttcaaaaatcgacagatgaaattctgaaatccctccctcgtggtggtgaacggatcacatatttattttctgctacgatgaccaaaaaggtcaagaaggttgaaagagtttgtctaaggaaccctgtgaagattgaagtagcatccaagtactctacggttgacacactaaagcagcatgtattgatggcgccgttcaagcacaaggattgctatctcgtatatattcttactaagaagtgtcagtgcacaacaatggtttttactgaacaatgcgccacagcaccctttttggcttatacacttcgaaatcttggaattagggccatccctcttcatggtgatatgagccagcaaaaaagacttggagccttaaacatgttcaaatcaggacagtgtaacgtacttgtctgcactgatgtggcaagtagaggattggatattccatcggtggatatggttattaattatgatattcccaagaacactaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

220

Amino Acids

24.93

Weight (kDa)

9.47

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47951 FvH4_6g52560
rosa_chinensis	RchiOBHm_Chr2g0149041
rosa_multiflora	Rmu_co8503557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121560
rosa_samantha	Rh1CG077300 Rh2BG095800 Rh2CG097700 Rh4DG259600 Rh5AG391900 Rh5DG408500 Rh7BG305700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	358
AclWI	GGATC	3 cut(s)	12, 23, 230
AcsI	RAATTY	2 cut(s)	167, 189
AcyI	GRCGYC	2 cut(s)	73, 359
AfaI	GTAC	3 cut(s)	37, 320, 573
AfiI	CCNNNNNNNGG	2 cut(s)	212, 506
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	5 cut(s)	173, 272, 305, 367, 553
AleI	CACNNNNGTG	1 cut(s)	587
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw21I	GWGCWC	1 cut(s)	419
Alw44I	GTGCAC	1 cut(s)	415
AlwI	GGATC	3 cut(s)	12, 23, 230
AoxI	GGCC	1 cut(s)	492
ApaLI	GTGCAC	1 cut(s)	415
ApeKI	GCWGC	2 cut(s)	154, 343
ApoI	RAATTY	2 cut(s)	167, 189
AseI	ATTAAT	1 cut(s)	633
AspLEI	GCGC	2 cut(s)	361, 446
AspS9I	GGNCC	1 cut(s)	492
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	3 cut(s)	173, 227, 521
AsuII	TTCGAA	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	419
BanI	GGYRCC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	141, 355
BccI	CCATC	3 cut(s)	349, 503, 622
BceAI	ACGGC	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	362
BisI	GCNGC	2 cut(s)	155, 344
BlsI	GCNGC	2 cut(s)	156, 345
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	492
BmiI	GGNNCC	3 cut(s)	290, 360, 538
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	381
BsaHI	GRCGYC	2 cut(s)	73, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 506
Bse8I	GATNNNNATC	1 cut(s)	381
BseGI	GGATG	2 cut(s)	311, 495
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	2 cut(s)	212, 506
BseSI	GKGCMC	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	141, 355
BsgI	GTGCAG	1 cut(s)	565
BshFI	GGCC	1 cut(s)	494
BshNI	GGYRCC	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	212, 506
BsnI	GGCC	1 cut(s)	494
Bsp119I	TTCGAA	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp143I	GATC	3 cut(s)	4, 15, 222
BspANI	GGCC	1 cut(s)	494
BspLI	GGNNCC	3 cut(s)	290, 360, 538
BspPI	GGATC	3 cut(s)	12, 23, 230
BspT104I	TTCGAA	1 cut(s)	475
BspT107I	GGYRCC	1 cut(s)	358
BssMI	GATC	3 cut(s)	4, 15, 222
BssNI	GRCGYC	2 cut(s)	73, 359
BssSI	CACGAG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	207
Bst4CI	ACNGT	5 cut(s)	11, 40, 121, 328, 564
Bst6I	CTCTTC	1 cut(s)	507
BstACI	GRCGYC	2 cut(s)	73, 359
BstBI	TTCGAA	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	521
BstDEI	CTNAG	3 cut(s)	284, 402, 657
BstF5I	GGATG	2 cut(s)	311, 495
BstH2I	RGCGCY	1 cut(s)	362
BstHHI	GCGC	2 cut(s)	361, 446
BstKTI	GATC	3 cut(s)	7, 18, 225
BstMBI	GATC	3 cut(s)	4, 15, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNSI	RCATGY	2 cut(s)	350, 550
BstSCI	CCNGG	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	419
BstV1I	GCAGC	2 cut(s)	141, 355
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	494
BtsCI	GGATG	2 cut(s)	311, 495
BtsIMutI	CAGTG	4 cut(s)	126, 419, 569, 582
Cac8I	GCNNGC	1 cut(s)	521
CfoI	GCGC	2 cut(s)	361, 446
Cfr13I	GGNCC	1 cut(s)	492
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	3 cut(s)	36, 319, 572
CviAII	CATG	3 cut(s)	347, 506, 547
CviJI	RGCY	6 cut(s)	44, 154, 464, 494, 519, 539
CviKI_1	RGCY	6 cut(s)	44, 154, 464, 494, 519, 539
CviQI	GTAC	3 cut(s)	36, 319, 572
DdeI	CTNAG	3 cut(s)	284, 402, 657
DinI	GGCGCC	1 cut(s)	360
DpnI	GATC	3 cut(s)	6, 17, 224
DpnII	GATC	3 cut(s)	4, 15, 222
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
EgeI	GGCGCC	1 cut(s)	360
EheI	GGCGCC	1 cut(s)	360
FaeI	CATG	3 cut(s)	350, 509, 550
FatI	CATG	3 cut(s)	346, 505, 546
Fnu4HI	GCNGC	2 cut(s)	155, 344
FokI	GGATG	2 cut(s)	298, 482
Fsp4HI	GCNGC	2 cut(s)	155, 344
GlaI	GCGC	2 cut(s)	360, 445
GluI	GCNGC	2 cut(s)	155, 344
HaeII	RGCGCY	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	2 cut(s)	361, 446
Hin1I	GRCGYC	2 cut(s)	73, 359
Hin1II	CATG	3 cut(s)	350, 509, 550
Hin6I	GCGC	2 cut(s)	359, 444
HinP1I	GCGC	2 cut(s)	359, 444
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	3 cut(s)	173, 227, 521
Hpy166II	GTNNAC	3 cut(s)	218, 331, 417
Hpy188I	TCNGA	2 cut(s)	15, 195
Hpy188III	TCNNGA	2 cut(s)	262, 558
Hpy8I	GTNNAC	3 cut(s)	218, 331, 417
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	2 cut(s)	89, 259
HpyCH4III	ACNGT	5 cut(s)	11, 40, 121, 328, 564
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	2 cut(s)	417, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	3 cut(s)	284, 402, 657
HpySE526I	ACGT	1 cut(s)	570
Hsp92I	GRCGYC	2 cut(s)	73, 359
Hsp92II	CATG	3 cut(s)	350, 509, 550
HspAI	GCGC	2 cut(s)	359, 444
KasI	GGCGCC	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	4, 15, 222
LmnI	GCTCC	1 cut(s)	536
LpnPI	CCDG	6 cut(s)	82, 116, 136, 306, 533, 543
Lsp1109I	GCAGC	2 cut(s)	141, 355
LweI	GCATC	1 cut(s)	320
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	2 cut(s)	92, 566
MalI	GATC	3 cut(s)	6, 17, 224
MboI	GATC	3 cut(s)	4, 15, 222
MboII	GAAGA	2 cut(s)	310, 494
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	419
MluCI	AATT	4 cut(s)	167, 189, 486, 634
Mly113I	GGCGCC	1 cut(s)	359
MnlI	CCTC	6 cut(s)	86, 136, 212, 216, 510, 593
MseI	TTAA	2 cut(s)	542, 633
MslI	CAYNNNNRTG	3 cut(s)	90, 422, 587
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	367
NarI	GGCGCC	1 cut(s)	359
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	3 cut(s)	4, 15, 222
NlaIII	CATG	3 cut(s)	350, 509, 550
NlaIV	GGNNCC	3 cut(s)	290, 360, 538
NmuCI	GTSAC	1 cut(s)	92
NspI	RCATGY	2 cut(s)	350, 550
NspV	TTCGAA	1 cut(s)	475
OliI	CACNNNNGTG	1 cut(s)	587
PciI	ACATGT	1 cut(s)	546
PkrI	GCNGC	2 cut(s)	156, 345
PluTI	GGCGCC	1 cut(s)	362
PscI	ACATGT	1 cut(s)	546
PshBI	ATTAAT	1 cut(s)	633
PspN4I	GGNNCC	3 cut(s)	290, 360, 538
PspPI	GGNCC	1 cut(s)	492
PsuI	RGATCY	1 cut(s)	15
RsaI	GTAC	3 cut(s)	37, 320, 573
RsaNI	GTAC	3 cut(s)	36, 319, 572
RseI	CAYNNNNRTG	3 cut(s)	90, 422, 587
SaqAI	TTAA	2 cut(s)	542, 633
SatI	GCNGC	2 cut(s)	155, 344
Sau3AI	GATC	3 cut(s)	4, 15, 222
Sau96I	GGNCC	1 cut(s)	492
ScaI	AGTACT	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	419
SetI	ASST	4 cut(s)	46, 261, 270, 573
SfaNI	GCATC	1 cut(s)	320
SfoI	GGCGCC	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	475
SmiMI	CAYNNNNRTG	3 cut(s)	90, 422, 587
Sse9I	AATT	4 cut(s)	167, 189, 486, 634
SspDI	GGCGCC	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	5 cut(s)	11, 40, 121, 328, 564
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	2 cut(s)	179, 475
TasI	AATT	4 cut(s)	167, 189, 486, 634
TatI	WGTACW	1 cut(s)	318
Tru1I	TTAA	2 cut(s)	542, 633
Tru9I	TTAA	2 cut(s)	542, 633
TscAI	CASTG	4 cut(s)	126, 419, 569, 589
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	2 cut(s)	154, 343
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	4 cut(s)	71, 180, 201, 494
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	4 cut(s)	126, 419, 569, 589
VneI	GTGCAC	1 cut(s)	415
VspI	ATTAAT	1 cut(s)	633
XapI	RAATTY	2 cut(s)	167, 189
XceI	RCATGY	2 cut(s)	350, 550
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.