Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0017704

Physical Location & Seq

Genomic Coordinates Forward (+)

16199734 .. 16214490

Gene Structure 14757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG077300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAACTCATGGCGTGGATCGGAAAAACTCAAGACGTCATCGGCGACGGCGAATCGGGTTCTGAGGCCGCGGCGGCTTTGCTATCGACGGCAGTGGCTGCAACTCGAGACTCGGCCTGGTTTCAGGTGTGCCATTCGCTTGGTGGAGGAACCGGATCTGGTATGGGGACTCTGTTGATTTCAAAAATCAGGGAGGAATACCCTGACAGCTTAGGTTTCATTCAGTTACTCAAATTCCGAGAGCCAGGAGGTTTCAATGAATATCAGTCGCTCTGGAAACAAGAAGCATGGTGGAACATTCAAGTCAAGAAGCTGCAAAGGGCTTGTCTAAGGAACCCTGTGAAGATTGAAGTAGCATCTAAATATTCTACCGTTGATACACTAAAGCAGCAGTATCGTTTTCTGCCGTCCCAGCACAAGGACTGTTATCTTGTATATATTCTGACTGAGAAGTGTCAATGTACAACTATGGTTTTTACTCGTACATGTGATGCAACACTCCTATTGGCTACGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

173

Amino Acids

19.36

Weight (kDa)

8.51

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	17 - 71	3e-08	Tubulin/FtsZ family, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47951 FvH4_6g52560
rosa_chinensis	RchiOBHm_Chr2g0149041
rosa_multiflora	Rmu_co8503557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121560
rosa_samantha	Rh1CG077300 Rh2BG095800 Rh2CG097700 Rh4DG259600 Rh5AG391900 Rh5DG408500 Rh7BG305700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccII	CGCG	1 cut(s)	71
AciI	CCGC	3 cut(s)	69, 71, 74
AclWI	GGATC	2 cut(s)	26, 163
AcsI	RAATTY	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	2 cut(s)	463, 484
AfiI	CCNNNNNNNGG	1 cut(s)	418
AflIII	ACRYGT	1 cut(s)	485
AgsI	TTSAA	4 cut(s)	183, 256, 302, 350
AjnI	CCWGG	2 cut(s)	116, 244
AluBI	AGCT	2 cut(s)	210, 313
AluI	AGCT	2 cut(s)	210, 313
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	2 cut(s)	26, 163
AlwNI	CAGNNNCTG	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	2 cut(s)	66, 114
ApeKI	GCWGC	3 cut(s)	98, 313, 388
ApoI	RAATTY	1 cut(s)	233
ArsI	GACNNNNNNTTYG	2 cut(s)	310, 342
AvaI	CYCGRG	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	85, 300, 400
BceAI	ACGGC	3 cut(s)	64, 105, 391
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	2 cut(s)	118, 246
BcoDI	GTCTC	1 cut(s)	102
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	6 cut(s)	69, 72, 75, 99, 314, 389
BlsI	GCNGC	6 cut(s)	70, 73, 76, 100, 315, 390
Bme1390I	CCNGG	2 cut(s)	118, 246
BmeT110I	CYCGRG	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	151, 335
BmrFI	CCNGG	2 cut(s)	118, 246
BmsI	GCATC	3 cut(s)	365, 481, 504
Bpu10I	CCTNAGC	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
BseBI	CCWGG	2 cut(s)	118, 246
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMII	CTCAG	2 cut(s)	54, 438
BseXI	GCAGC	3 cut(s)	85, 300, 400
BseYI	CCCAGC	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	68, 116
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	2 cut(s)	181, 394
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	2 cut(s)	181, 394
BsnI	GGCC	2 cut(s)	68, 116
BsoBI	CYCGRG	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	461
Bsp143I	GATC	2 cut(s)	18, 155
BspACI	CCGC	3 cut(s)	69, 71, 74
BspANI	GGCC	2 cut(s)	68, 116
BspCNI	CTCAG	2 cut(s)	55, 439
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	151, 335
BspPI	GGATC	2 cut(s)	26, 163
BsrGI	TGTACA	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	18, 155
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	118, 246
Bst4CI	ACNGT	2 cut(s)	373, 425
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	461
BstDEI	CTNAG	4 cut(s)	63, 211, 329, 447
BstDSI	CCRYGG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	71
BstKTI	GATC	2 cut(s)	21, 158
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	2 cut(s)	18, 155
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 98, 412
BstNI	CCWGG	2 cut(s)	118, 246
BstNSI	RCATGY	1 cut(s)	489
BstSCI	CCNGG	2 cut(s)	116, 244
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	85, 300, 400
BstX2I	RGATCY	1 cut(s)	155
BstXI	CCANNNNNNTGG	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	68, 116
BtgI	CCRYGG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr42I	CCGCGG	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	462, 483
CviAII	CATG	3 cut(s)	10, 288, 486
CviJI	RGCY	9 cut(s)	68, 77, 98, 116, 210, 244, 313, 323, 509
CviKI_1	RGCY	9 cut(s)	68, 77, 98, 116, 210, 244, 313, 323, 509
CviQI	GTAC	2 cut(s)	462, 483
DdeI	CTNAG	4 cut(s)	63, 211, 329, 447
DpnI	GATC	2 cut(s)	20, 157
DpnII	GATC	2 cut(s)	18, 155
Eco88I	CYCGRG	1 cut(s)	105
EcoRII	CCWGG	2 cut(s)	116, 244
FaeI	CATG	3 cut(s)	13, 291, 489
FaiI	YATR	7 cut(s)	11, 164, 289, 436, 438, 470, 487
FaqI	GGGAC	2 cut(s)	181, 394
FatI	CATG	3 cut(s)	9, 287, 485
Fnu4HI	GCNGC	6 cut(s)	69, 72, 75, 99, 314, 389
Fsp4HI	GCNGC	6 cut(s)	69, 72, 75, 99, 314, 389
GluI	GCNGC	6 cut(s)	69, 72, 75, 99, 314, 389
GsaI	CCCAGC	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	68, 116
HapII	CCGG	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	13, 291, 489
HinfI	GANTC	3 cut(s)	53, 110, 169
HpaII	CCGG	1 cut(s)	153
Hpy188I	TCNGA	4 cut(s)	23, 64, 239, 444
Hpy188III	TCNNGA	4 cut(s)	32, 107, 274, 307
Hpy99I	CGWCG	2 cut(s)	50, 91
HpyCH4III	ACNGT	2 cut(s)	373, 425
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	101, 316, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 98, 412
HpyF3I	CTNAG	4 cut(s)	63, 211, 329, 447
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	13, 291, 489
KspI	CCGCGG	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	18, 155
Lsp1109I	GCAGC	3 cut(s)	85, 300, 400
LweI	GCATC	3 cut(s)	365, 481, 504
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	2 cut(s)	20, 157
MboI	GATC	2 cut(s)	18, 155
MboII	GAAGA	1 cut(s)	355
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	2 cut(s)	104, 163
MnlI	CCTC	4 cut(s)	58, 140, 187, 242
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	118, 246
MvaI	CCWGG	2 cut(s)	118, 246
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	3 cut(s)	74, 98, 412
NdeII	GATC	2 cut(s)	18, 155
NlaIII	CATG	3 cut(s)	13, 291, 489
NlaIV	GGNNCC	2 cut(s)	151, 335
NmeAIII	GCCGAG	1 cut(s)	92
NspI	RCATGY	1 cut(s)	489
PaeR7I	CTCGAG	1 cut(s)	105
PciI	ACATGT	1 cut(s)	485
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 48
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	6 cut(s)	70, 73, 76, 100, 315, 390
PleI	GAGTC	2 cut(s)	104, 163
PpsI	GAGTC	2 cut(s)	104, 163
PscI	ACATGT	1 cut(s)	485
Psp6I	CCWGG	2 cut(s)	116, 244
PspFI	CCCAGC	1 cut(s)	411
PspGI	CCWGG	2 cut(s)	116, 244
PspN4I	GGNNCC	2 cut(s)	151, 335
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	2 cut(s)	463, 484
RsaNI	GTAC	2 cut(s)	462, 483
SacII	CCGCGG	1 cut(s)	72
SatI	GCNGC	6 cut(s)	69, 72, 75, 99, 314, 389
Sau3AI	GATC	2 cut(s)	18, 155
SchI	GAGTC	2 cut(s)	104, 163
ScrFI	CCNGG	2 cut(s)	118, 246
SetI	ASST	6 cut(s)	39, 129, 212, 217, 253, 315
SfaNI	GCATC	3 cut(s)	365, 481, 504
Sfr274I	CTCGAG	1 cut(s)	105
Sfr303I	CCGCGG	1 cut(s)	72
SgrBI	CCGCGG	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	105
SmlI	CTYRAG	2 cut(s)	30, 105
SmoI	CTYRAG	2 cut(s)	30, 105
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	3 cut(s)	69, 71, 74
SspI	AATATT	1 cut(s)	365
StyD4I	CCNGG	2 cut(s)	116, 244
TaaI	ACNGT	2 cut(s)	373, 425
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	86, 106
TasI	AATT	1 cut(s)	233
TatI	WGTACW	1 cut(s)	461
TauI	GCSGC	3 cut(s)	71, 74, 77
TfiI	GAWTC	1 cut(s)	53
TscAI	CASTG	1 cut(s)	99
TseI	GCWGC	3 cut(s)	98, 313, 388
TspDTI	ATGAA	3 cut(s)	17, 208, 273
TspRI	CASTG	1 cut(s)	99
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XhoI	CTCGAG	1 cut(s)	105
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.