Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0017704

Physical Location & Seq

Genomic Coordinates Forward (+)

67950049 .. 67950650

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG391900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGAGAAAGGTGTATATGACGCCTTGCAGAAGAAGTACCTGAAAACGCTTTTGTTCTGTGTGTGTGAAGAGGTTGAAGGGCCGATGATAGAGGAATACACATTTTCATTCAGTTACTCAAATTCCGAGAGCCAGGAGGTTTCAATGAATATCAGTCGCTCTGGAAACAAGAAGCATGGTGGAACATTCAAGTGTGACTCCACAACAGAAATTACCCCCAACCAGATGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

77

Amino Acids

8.8

Weight (kDa)

5.32

Isoelectric Point (pI)

59.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	1 - 77	1.8e-17	HORMA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47951 FvH4_6g52560
rosa_chinensis	RchiOBHm_Chr2g0149041
rosa_multiflora	Rmu_co8503557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121560
rosa_samantha	Rh1CG077300 Rh2BG095800 Rh2CG097700 Rh4DG259600 Rh5AG391900 Rh5DG408500 Rh7BG305700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	121
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	38
AgsI	TTSAA	3 cut(s)	77, 144, 190
AjnI	CCWGG	1 cut(s)	132
AoxI	GGCC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	82
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	80
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	2 cut(s)	82, 132
CviKI_1	RGCY	2 cut(s)	82, 132
CviQI	GTAC	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	132
FaeI	CATG	1 cut(s)	179
FaiI	YATR	3 cut(s)	16, 18, 177
FatI	CATG	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	82
HgaI	GACGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	179
HinfI	GANTC	1 cut(s)	197
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	162
HpyAV	CCTTC	1 cut(s)	71
HpyCH4V	TGCA	1 cut(s)	28
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	179
LpnPI	CCDG	4 cut(s)	53, 119, 146, 147
MaeIII	GTNAC	2 cut(s)	113, 194
MboII	GAAGA	2 cut(s)	43, 80
MluCI	AATT	2 cut(s)	121, 210
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	4 cut(s)	64, 85, 130, 222
MslI	CAYNNNNRTG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
NlaIII	CATG	1 cut(s)	179
NmuCI	GTSAC	1 cut(s)	194
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	80
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	5 cut(s)	13, 42, 75, 141, 233
SgeI	CNNG	9 cut(s)	37, 52, 139, 145, 146, 174, 181, 188, 202
SmiMI	CAYNNNNRTG	1 cut(s)	190
Sse9I	AATT	2 cut(s)	121, 210
StyD4I	CCNGG	1 cut(s)	132
TasI	AATT	2 cut(s)	121, 210
TseFI	GTSAC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	96, 161
XapI	RAATTY	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.