Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017704

Physical Location & Seq

Genomic Coordinates Reverse (-)

38659192 .. 38660907

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGTTGAAGAGGCTAGGGTTCTTGCCAGCCGGCCACACGTCATTGTTGCGACACCAGGACGTCTCCTTCATCATCTGCGTGACACAAAGGGATTTAATCTTTGTGCAGTGAAATATCTGGTTAAGAAGGTTGAAAGAGCTTGTCTAAGGAACCCTGTGAAGGCATATGAAAGAGTCTCTTGCACCATGTTCATTCTCCACATATTTGTTTCAAAAGCGATAACATGCATGTCATTTCTTCATTCATCTCAGATTGAAGTAGCATCCAAGTACTCTACGGATTTCAATCTCGTATATATTCTTACGAAGAAGTGCCACTGCACCACAATGGTTTTTACTGAACAATGCGACTCGGCGCCCTTTTTGGCTTATACACTTCGAAATCTTGGAATTAGAGCCATCCCTCTTCATGGTAATATGAGCCAGCGAAAAAGACTTGGAGCCTTAAACATGTTCAAATCTGGACAGTGTAACGTACTTATCTGCACTGATGTTGCAAGTAGAGGATTGGATATTCCATCGGTAGATATGGTTATCAACTATGATATTCCCAAGAACCCTAAGGCCCAGTTGTACATCGGTGGAAGCAAAGAAACCAAGAATCAAAGTCATGGATGCTGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

209

Amino Acids

23.34

Weight (kDa)

9.45

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	99 - 189	5.5e-23	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47951 FvH4_6g52560
rosa_chinensis	RchiOBHm_Chr2g0149041
rosa_multiflora	Rmu_co8503557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121560
rosa_samantha	Rh1CG077300 Rh2BG095800 Rh2CG097700 Rh4DG259600 Rh5AG391900 Rh5DG408500 Rh7BG305700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	612
AatII	GACGTC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	612
AccB1I	GGYRCC	1 cut(s)	355
AcoI	YGGCCR	1 cut(s)	32
AcyI	GRCGYC	2 cut(s)	61, 356
AfaI	GTAC	3 cut(s)	272, 477, 575
AfiI	CCNNNNNNNGG	2 cut(s)	160, 410
AflIII	ACRYGT	2 cut(s)	37, 450
AgsI	TTSAA	6 cut(s)	8, 134, 213, 257, 286, 457
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw26I	GTCTC	2 cut(s)	68, 181
AoxI	GGCC	2 cut(s)	32, 564
ApeKI	GCWGC	1 cut(s)	618
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	565
AsuII	TTCGAA	1 cut(s)	379
AxyI	CCTNAGG	1 cut(s)	561
BanI	GGYRCC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	2 cut(s)	407, 526
BciT130I	CCWGG	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	68, 181
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	619
BfoI	RGCGCY	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	612
BisI	GCNGC	1 cut(s)	619
BlsI	GCNGC	1 cut(s)	620
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	57
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	3 cut(s)	152, 357, 442
BmrFI	CCNGG	1 cut(s)	57
BmrI	ACTGGG	1 cut(s)	562
BmsI	GCATC	2 cut(s)	272, 605
BmuI	ACTGGG	1 cut(s)	562
Bpu14I	TTCGAA	1 cut(s)	379
BsaBI	GATNNNNATC	1 cut(s)	285
BsaHI	GRCGYC	2 cut(s)	61, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 410
Bse118I	RCCGGY	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	568
Bse21I	CCTNAGG	1 cut(s)	561
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	57
BseGI	GGATG	3 cut(s)	263, 399, 620
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	2 cut(s)	160, 410
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	568
BseXI	GCAGC	1 cut(s)	605
BsgI	GTGCAG	3 cut(s)	126, 304, 469
BshFI	GGCC	2 cut(s)	34, 566
BshNI	GGYRCC	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	160, 410
BsmAI	GTCTC	2 cut(s)	68, 181
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	34, 566
Bsp119I	TTCGAA	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	573
BspANI	GGCC	2 cut(s)	34, 566
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	3 cut(s)	152, 357, 442
BspMAI	CTGCAG	1 cut(s)	623
BspMI	ACCTGC	1 cut(s)	612
BspT104I	TTCGAA	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	30
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	568
BssAI	RCCGGY	1 cut(s)	30
BssNI	GRCGYC	2 cut(s)	61, 356
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	468
Bst6I	CTCTTC	2 cut(s)	3, 411
BstACI	GRCGYC	2 cut(s)	61, 356
BstAUI	TGTACA	1 cut(s)	573
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	3 cut(s)	28, 32, 425
BstDEI	CTNAG	3 cut(s)	146, 249, 561
BstF5I	GGATG	3 cut(s)	263, 399, 620
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstMAI	GTCTC	2 cut(s)	68, 181
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	3 cut(s)	228, 232, 454
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	605
Bsu36I	CCTNAGG	1 cut(s)	561
BsuRI	GGCC	2 cut(s)	34, 566
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	263, 399, 620
BtsI	GCAGTG	2 cut(s)	114, 316
BtsIMutI	CAGTG	4 cut(s)	114, 316, 473, 486
BveI	ACCTGC	1 cut(s)	612
Cac8I	GCNNGC	3 cut(s)	28, 32, 425
CfoI	GCGC	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	565
Csp6I	GTAC	3 cut(s)	271, 476, 574
CviAII	CATG	6 cut(s)	187, 225, 229, 410, 451, 611
CviJI	RGCY	9 cut(s)	14, 30, 34, 140, 368, 398, 423, 443, 566
CviKI_1	RGCY	9 cut(s)	14, 30, 34, 140, 368, 398, 423, 443, 566
CviQI	GTAC	3 cut(s)	271, 476, 574
DdeI	CTNAG	3 cut(s)	146, 249, 561
DinI	GGCGCC	1 cut(s)	357
EaeI	YGGCCR	1 cut(s)	32
Eam1104I	CTCTTC	2 cut(s)	3, 411
EarI	CTCTTC	2 cut(s)	3, 411
Eco81I	CCTNAGG	1 cut(s)	561
EcoRII	CCWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	230
EgeI	GGCGCC	1 cut(s)	357
EheI	GGCGCC	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	6 cut(s)	190, 228, 232, 413, 454, 614
FalI	AAGNNNNNCTT	2 cut(s)	163, 195
FatI	CATG	6 cut(s)	186, 224, 228, 409, 450, 610
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	619
FokI	GGATG	2 cut(s)	250, 386
Fsp4HI	GCNGC	1 cut(s)	619
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	619
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	2 cut(s)	34, 566
HapII	CCGG	1 cut(s)	31
HhaI	GCGC	1 cut(s)	358
Hin1I	GRCGYC	2 cut(s)	61, 356
Hin1II	CATG	6 cut(s)	190, 228, 232, 413, 454, 614
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	3 cut(s)	174, 350, 601
HpaII	CCGG	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	1 cut(s)	462
HpyAV	CCTTC	3 cut(s)	77, 121, 154
HpyCH4III	ACNGT	1 cut(s)	468
HpyCH4IV	ACGT	3 cut(s)	39, 61, 474
HpyCH4V	TGCA	7 cut(s)	107, 183, 228, 321, 486, 497, 621
HpyF3I	CTNAG	3 cut(s)	146, 249, 561
HpySE526I	ACGT	3 cut(s)	39, 61, 474
Hsp92I	GRCGYC	2 cut(s)	61, 356
Hsp92II	CATG	6 cut(s)	190, 228, 232, 413, 454, 614
HspAI	GCGC	1 cut(s)	356
KasI	GGCGCC	1 cut(s)	355
KroI	GCCGGC	1 cut(s)	30
KroNI	GCCGGC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	2 cut(s)	272, 605
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	3 cut(s)	39, 61, 474
MaeIII	GTNAC	2 cut(s)	80, 470
MboII	GAAGA	4 cut(s)	20, 230, 319, 398
MluCI	AATT	1 cut(s)	390
Mly113I	GGCGCC	1 cut(s)	356
MlyI	GAGTC	2 cut(s)	183, 344
MnlI	CCTC	3 cut(s)	4, 414, 497
Mph1103I	ATGCAT	1 cut(s)	230
MroNI	GCCGGC	1 cut(s)	30
MseI	TTAA	3 cut(s)	96, 123, 446
MslI	CAYNNNNRTG	2 cut(s)	78, 326
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
NaeI	GCCGGC	1 cut(s)	32
NarI	GGCGCC	1 cut(s)	356
NdeI	CATATG	1 cut(s)	166
NgoMIV	GCCGGC	1 cut(s)	30
NlaIII	CATG	6 cut(s)	190, 228, 232, 413, 454, 614
NlaIV	GGNNCC	3 cut(s)	152, 357, 442
NmeAIII	GCCGAG	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	80
NsiI	ATGCAT	1 cut(s)	230
NspI	RCATGY	3 cut(s)	228, 232, 454
NspV	TTCGAA	1 cut(s)	379
PaqCI	CACCTGC	1 cut(s)	612
PciI	ACATGT	1 cut(s)	450
PdiI	GCCGGC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	601
PkrI	GCNGC	1 cut(s)	620
PleI	GAGTC	2 cut(s)	182, 344
PluTI	GGCGCC	1 cut(s)	359
PpsI	GAGTC	2 cut(s)	182, 344
PscI	ACATGT	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	3 cut(s)	152, 357, 442
PspPI	GGNCC	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	623
RsaI	GTAC	3 cut(s)	272, 477, 575
RsaNI	GTAC	3 cut(s)	271, 476, 574
RseI	CAYNNNNRTG	2 cut(s)	78, 326
SaqAI	TTAA	3 cut(s)	96, 123, 446
SatI	GCNGC	1 cut(s)	619
Sau96I	GGNCC	1 cut(s)	565
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	2 cut(s)	183, 344
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	6 cut(s)	42, 64, 132, 142, 477, 626
SfaNI	GCATC	2 cut(s)	272, 605
SfcI	CTRYAG	1 cut(s)	619
SfoI	GGCGCC	1 cut(s)	357
SfuI	TTCGAA	1 cut(s)	379
SmiMI	CAYNNNNRTG	2 cut(s)	78, 326
Sse9I	AATT	1 cut(s)	390
SspDI	GGCGCC	1 cut(s)	355
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	468
TaiI	ACGT	3 cut(s)	42, 64, 477
TaqI	TCGA	1 cut(s)	379
TasI	AATT	1 cut(s)	390
TatI	WGTACW	2 cut(s)	270, 573
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	3 cut(s)	96, 123, 446
Tru9I	TTAA	3 cut(s)	96, 123, 446
TscAI	CASTG	4 cut(s)	114, 323, 473, 493
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	618
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	6 cut(s)	59, 181, 183, 230, 234, 398
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	4 cut(s)	114, 323, 473, 493
XceI	RCATGY	3 cut(s)	228, 232, 454
XspI	CTAG	1 cut(s)	15
ZraI	GACGTC	1 cut(s)	62
ZrmI	AGTACT	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.