Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0017704

Physical Location & Seq

Genomic Coordinates Forward (+)

29134551 .. 29136767

Gene Structure 2217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG305700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCGCCGTTCAAGCACAAGGATTGCTATCTCGTATATATTCTTACTAAGAAGTGTCAGTGCACAACAATGGTTTTTACTGAACAATGCGCCACAACACCCTTTTTGGCTTATACACTTCGAAATCTTGGAATTAGGGCCATCCCTCTTCATGGTGATATGAGCCAGCAAAAAAGACTTGGAGCCTTAAACATGTTCAAATCAGGACAGTGTAATGTACTTGTCTGCACTGATGTGGCAAGTAGAGGATTGGATATTCCATCGGTGGATATGGTTATTAATTATGATATTCCCAAGAACACTAAGAATTACATCCATCGAGTAGGAAGAACTGCTCGTGCTGGGCGATCCGGGGTTGCAATCACTTTCGTGGGCAGTATTCTTGACTTACCAGGGTATTCCCAGATAGAATCGCTTATTGGCAATAAGTTACCTCTATTTCCTGCTCCATCTGAAGAAGCCTTACAATTTCAAGAAAGTGTCAGAGAGGCTAGAAGATTGGCCACCTCGAAAATGAAAGAAAGTGGAGGCAAGAAGAGAAAGTGGGGAGGAAACGATGATGAGGATGATATTGTAAAGTATTTAAGTAACCAGGCTGGAACGTCCAAGAAGATGTTCAACAAAAGGTTCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

212

Amino Acids

23.71

Weight (kDa)

9.63

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	10 - 115	5.3e-31	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47951 FvH4_6g52560
rosa_chinensis	RchiOBHm_Chr2g0149041
rosa_multiflora	Rmu_co8503557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121560
rosa_samantha	Rh1CG077300 Rh2BG095800 Rh2CG097700 Rh4DG259600 Rh5AG391900 Rh5DG408500 Rh7BG305700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	342
AcoI	YGGCCR	1 cut(s)	501
AcuI	CTGAAG	1 cut(s)	474
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	5 cut(s)	13, 199, 473, 619, 631
AjnI	CCWGG	2 cut(s)	391, 591
AjuI	GAANNNNNNNTTGG	4 cut(s)	402, 434, 599, 631
AleI	CACNNNNGTG	2 cut(s)	233, 368
Alw21I	GWGCWC	1 cut(s)	65
Alw44I	GTGCAC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	342
AoxI	GGCC	2 cut(s)	138, 501
ApaLI	GTGCAC	1 cut(s)	61
AseI	ATTAAT	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	614
AspLEI	GCGC	2 cut(s)	7, 92
AspS9I	GGNCC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	352
AsuHPI	GGTGA	1 cut(s)	167
AsuII	TTCGAA	1 cut(s)	121
BaeGI	GKGCMC	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
BauI	CACGAG	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	65
BccI	CCATC	4 cut(s)	149, 268, 324, 457
BciT130I	CCWGG	2 cut(s)	393, 593
BcnI	CCSGG	1 cut(s)	352
BfaI	CTAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	8
Bme1390I	CCNGG	3 cut(s)	352, 393, 593
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	2 cut(s)	6, 184
BmrFI	CCNGG	3 cut(s)	352, 393, 593
Bpu14I	TTCGAA	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	352
BsaBI	GATNNNNATC	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	351, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	2 cut(s)	393, 593
BseDI	CCNNGG	2 cut(s)	351, 392
BseGI	GGATG	3 cut(s)	141, 312, 571
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	65
BseYI	CCCAGC	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	140, 503
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	152
BsnI	GGCC	2 cut(s)	140, 503
Bsp119I	TTCGAA	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	347
BspANI	GGCC	2 cut(s)	140, 503
BspLI	GGNNCC	2 cut(s)	6, 184
BspPI	GGATC	1 cut(s)	342
BspT104I	TTCGAA	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	351, 392
BssMI	GATC	1 cut(s)	347
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	2 cut(s)	393, 593
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	2 cut(s)	153, 530
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	2 cut(s)	48, 303
BstF5I	GGATG	3 cut(s)	141, 312, 571
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 92
BstKTI	GATC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	2 cut(s)	393, 593
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	3 cut(s)	350, 391, 591
BstSLI	GKGCMC	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	140, 503
BtsCI	GGATG	3 cut(s)	141, 312, 571
BtsIMutI	CAGTG	3 cut(s)	65, 215, 228
Cac8I	GCNNGC	1 cut(s)	167
CfoI	GCGC	2 cut(s)	7, 92
Cfr13I	GGNCC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	2 cut(s)	152, 193
CviJI	RGCY	8 cut(s)	110, 140, 165, 185, 461, 491, 503, 596
CviKI_1	RGCY	8 cut(s)	110, 140, 165, 185, 461, 491, 503, 596
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	2 cut(s)	48, 303
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	349
DpnII	GATC	1 cut(s)	347
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	2 cut(s)	153, 530
EarI	CTCTTC	2 cut(s)	153, 530
Eco57I	CTGAAG	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	391, 591
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	2 cut(s)	155, 196
FaiI	YATR	8 cut(s)	37, 39, 114, 153, 161, 194, 272, 285
FatI	CATG	2 cut(s)	151, 192
FokI	GGATG	3 cut(s)	128, 299, 578
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	2 cut(s)	6, 91
GsaI	CCCAGC	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	140, 503
HapII	CCGG	1 cut(s)	351
HhaI	GCGC	2 cut(s)	7, 92
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	155, 196
Hin6I	GCGC	2 cut(s)	5, 90
HinP1I	GCGC	2 cut(s)	5, 90
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	2 cut(s)	454, 485
Hpy188III	TCNNGA	4 cut(s)	204, 383, 473, 631
Hpy8I	GTNNAC	1 cut(s)	63
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	602
HpyCH4V	TGCA	3 cut(s)	63, 228, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	2 cut(s)	48, 303
HpySE526I	ACGT	1 cut(s)	602
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	155, 196
HspAI	GCGC	2 cut(s)	5, 90
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	347
LmnI	GCTCC	2 cut(s)	182, 451
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	602
MaeIII	GTNAC	2 cut(s)	429, 587
MalI	GATC	1 cut(s)	349
MboI	GATC	1 cut(s)	347
MboII	GAAGA	6 cut(s)	140, 339, 467, 507, 547, 622
MhlI	GDGCHC	1 cut(s)	65
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	4 cut(s)	132, 280, 307, 467
MluNI	TGGCCA	1 cut(s)	503
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	8 cut(s)	156, 239, 444, 481, 517, 521, 542, 556
Mox20I	TGGCCA	1 cut(s)	503
MroXI	GAANNNNTTC	1 cut(s)	614
MscI	TGGCCA	1 cut(s)	503
MseI	TTAA	3 cut(s)	188, 279, 584
MslI	CAYNNNNRTG	3 cut(s)	68, 233, 368
Msp20I	TGGCCA	1 cut(s)	503
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	3 cut(s)	352, 393, 593
MvaI	CCWGG	2 cut(s)	393, 593
MwoI	GCNNNNNNNGC	1 cut(s)	13
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	352
NdeII	GATC	1 cut(s)	347
NlaIII	CATG	2 cut(s)	155, 196
NlaIV	GGNNCC	2 cut(s)	6, 184
NspI	RCATGY	1 cut(s)	196
NspV	TTCGAA	1 cut(s)	121
OliI	CACNNNNGTG	2 cut(s)	233, 368
PciI	ACATGT	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	614
PfeI	GAWTC	1 cut(s)	410
PluTI	GGCGCC	1 cut(s)	8
PscI	ACATGT	1 cut(s)	192
PshBI	ATTAAT	1 cut(s)	279
Psp6I	CCWGG	2 cut(s)	391, 591
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	2 cut(s)	391, 591
PspN4I	GGNNCC	2 cut(s)	6, 184
PspPI	GGNCC	1 cut(s)	138
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	3 cut(s)	68, 233, 368
SaqAI	TTAA	3 cut(s)	188, 279, 584
Sau3AI	GATC	1 cut(s)	347
Sau96I	GGNCC	1 cut(s)	138
ScrFI	CCNGG	3 cut(s)	352, 393, 593
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	4 cut(s)	436, 509, 605, 629
SfoI	GGCGCC	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	121
SmiMI	CAYNNNNRTG	3 cut(s)	68, 233, 368
Sse9I	AATT	4 cut(s)	132, 280, 307, 467
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	3 cut(s)	350, 391, 591
TaaI	ACNGT	1 cut(s)	210
TaiI	ACGT	1 cut(s)	605
TaqI	TCGA	3 cut(s)	121, 319, 509
TasI	AATT	4 cut(s)	132, 280, 307, 467
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	3 cut(s)	188, 279, 584
Tru9I	TTAA	3 cut(s)	188, 279, 584
TscAI	CASTG	3 cut(s)	65, 215, 235
TspDTI	ATGAA	2 cut(s)	140, 530
TspRI	CASTG	3 cut(s)	65, 215, 235
VneI	GTGCAC	1 cut(s)	61
VspI	ATTAAT	1 cut(s)	279
XceI	RCATGY	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.