Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017704

Physical Location & Seq

Genomic Coordinates Reverse (-)

54193985 .. 54197229

Gene Structure 3245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTGTCAGTCTAAAATTTCTTATGTTAGTGTTGCTGAGTTAGAAGAACTAGGACTGGTACCACATGTCATCACACTCAGATCAAGGGTTTCAGGTATTGTTGGTGATGACACAAGTAGTGCCATCCATCATGCTTTTTGCAAGACTTCAATTCAGGCTTATGTGCTTGGCAAGCATATCTTTTTGGAGGAGTGGATGGTCCAACAGACTATTATGCTTGCAAAGCGGCCACACATTATTAATCTTGGCTTGACATTGCTCATAATGAAGGTTGCTACACGTGGACGTCTCATGATCATATGCAATTTCAACTTGGATGGAATAGGTCAAGAAGCTGCAAGGGCTTGTCTAAGGAACCCTCTGAAGTCAAAAAGATTTGGTGCCTTAAATATGTTTAAAGCTGGACAGTGTAATGTACTTATCTGCACTGATGTGGCAAGTAGAGGATTAGATATTCCATCGGTGGATATGGTTTATTACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

161

Amino Acids

17.84

Weight (kDa)

8.99

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	123 - 159	3e-08	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47951 FvH4_6g52560
rosa_chinensis	RchiOBHm_Chr2g0149041
rosa_multiflora	Rmu_co8503557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121560
rosa_samantha	Rh1CG077300 Rh2BG095800 Rh2CG097700 Rh4DG259600 Rh5AG391900 Rh5DG408500 Rh7BG305700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	289
Acc65I	GGTACC	1 cut(s)	58
AccB1I	GGYRCC	2 cut(s)	58, 380
AciI	CCGC	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	383
AcvI	CACGTG	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	286
AfaI	GTAC	2 cut(s)	60, 417
AflIII	ACRYGT	2 cut(s)	64, 278
AgsI	TTSAA	2 cut(s)	150, 310
AleI	CACNNNNGTG	1 cut(s)	431
AluBI	AGCT	2 cut(s)	335, 401
AluI	AGCT	2 cut(s)	335, 401
Alw26I	GTCTC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	15
AseI	ATTAAT	1 cut(s)	240
Asp718I	GGTACC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	199
BanI	GGYRCC	2 cut(s)	58, 380
BbrPI	CACGTG	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	5 cut(s)	131, 135, 190, 311, 466
BclI	TGATCA	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	2 cut(s)	227, 336
BlsI	GCNGC	2 cut(s)	228, 337
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	3 cut(s)	60, 356, 382
BsaAI	YACGTR	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	254
BseGI	GGATG	3 cut(s)	123, 201, 322
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	2 cut(s)	27, 91
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	409
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	2 cut(s)	58, 380
BsmAI	GTCTC	1 cut(s)	293
BsmBI	CGTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	80, 294
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	2 cut(s)	28, 90
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	60, 356, 382
BspT107I	GGYRCC	2 cut(s)	58, 380
BsrDI	GCAATG	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	80, 294
BssNI	GRCGYC	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	408
BstACI	GRCGYC	1 cut(s)	286
BstBAI	YACGTR	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	173, 219
BstDEI	CTNAG	3 cut(s)	36, 77, 350
BstF5I	GGATG	3 cut(s)	123, 201, 322
BstKTI	GATC	2 cut(s)	83, 297
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	80, 294
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 223, 341
BstNSI	RCATGY	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	123, 201, 322
BtsIMutI	CAGTG	2 cut(s)	413, 426
Cac8I	GCNNGC	2 cut(s)	173, 219
CciI	TCATGA	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	59, 416
CviAII	CATG	3 cut(s)	65, 131, 292
CviJI	RGCY	6 cut(s)	158, 229, 249, 335, 344, 401
CviKI_1	RGCY	6 cut(s)	158, 229, 249, 335, 344, 401
CviQI	GTAC	2 cut(s)	59, 416
DdeI	CTNAG	3 cut(s)	36, 77, 350
DpnI	GATC	2 cut(s)	82, 296
DpnII	GATC	2 cut(s)	80, 294
DraI	TTTAAA	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	383
Eco72I	CACGTG	1 cut(s)	281
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	3 cut(s)	68, 134, 295
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	3 cut(s)	64, 130, 291
FauNDI	CATATG	1 cut(s)	299
FbaI	TGATCA	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	227, 336
FokI	GGATG	3 cut(s)	110, 208, 329
Fsp4HI	GCNGC	2 cut(s)	227, 336
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	2 cut(s)	227, 336
HaeIII	GGCC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	3 cut(s)	68, 134, 295
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	80, 363
Hpy188III	TCNNGA	2 cut(s)	292, 329
Hpy8I	GTNNAC	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	408
HpyCH4IV	ACGT	2 cut(s)	280, 286
HpyCH4V	TGCA	5 cut(s)	141, 221, 303, 338, 426
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 223, 341
HpyF3I	CTNAG	3 cut(s)	36, 77, 350
HpySE526I	ACGT	2 cut(s)	280, 286
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	3 cut(s)	68, 134, 295
KpnI	GGTACC	1 cut(s)	62
Ksp22I	TGATCA	1 cut(s)	294
Kzo9I	GATC	2 cut(s)	80, 294
LpnPI	CCDG	4 cut(s)	41, 78, 140, 387
Lsp1109I	GCAGC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	2 cut(s)	280, 286
MalI	GATC	2 cut(s)	82, 296
MboI	GATC	2 cut(s)	80, 294
MboII	GAAGA	1 cut(s)	56
MluCI	AATT	3 cut(s)	15, 150, 304
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	3 cut(s)	181, 369, 437
MseI	TTAA	3 cut(s)	240, 386, 396
MslI	CAYNNNNRTG	1 cut(s)	431
MwoI	GCNNNNNNNGC	3 cut(s)	172, 223, 341
NdeI	CATATG	1 cut(s)	299
NdeII	GATC	2 cut(s)	80, 294
NlaIII	CATG	3 cut(s)	68, 134, 295
NlaIV	GGNNCC	3 cut(s)	60, 356, 382
NspI	RCATGY	1 cut(s)	68
OliI	CACNNNNGTG	1 cut(s)	431
PagI	TCATGA	1 cut(s)	291
PciI	ACATGT	1 cut(s)	64
PkrI	GCNGC	2 cut(s)	228, 337
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	281
PscI	ACATGT	1 cut(s)	64
PshBI	ATTAAT	1 cut(s)	240
PspCI	CACGTG	1 cut(s)	281
PspN4I	GGNNCC	3 cut(s)	60, 356, 382
PspPI	GGNCC	1 cut(s)	199
RsaI	GTAC	2 cut(s)	60, 417
RsaNI	GTAC	2 cut(s)	59, 416
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	240, 386, 396
SatI	GCNGC	2 cut(s)	227, 336
Sau3AI	GATC	2 cut(s)	80, 294
Sau96I	GGNCC	1 cut(s)	199
SetI	ASST	7 cut(s)	97, 273, 283, 289, 328, 337, 403
SinI	GGWCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	3 cut(s)	15, 150, 304
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	408
TaiI	ACGT	2 cut(s)	283, 289
TasI	AATT	3 cut(s)	15, 150, 304
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	1 cut(s)	229
Tru1I	TTAA	3 cut(s)	240, 386, 396
Tru9I	TTAA	3 cut(s)	240, 386, 396
TscAI	CASTG	2 cut(s)	413, 433
TseI	GCWGC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	281
TspRI	CASTG	2 cut(s)	413, 433
VpaK11BI	GGWCC	1 cut(s)	199
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	1 cut(s)	15
XceI	RCATGY	1 cut(s)	68
XspI	CTAG	1 cut(s)	50
ZraI	GACGTC	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.