Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017704

Physical Location & Seq

Genomic Coordinates Forward (+)

7538298 .. 7541775

Gene Structure 3478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG095800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAGAAAGGTGTATATGACGCCTTGCAGAAGAAGTACCTGAAAACGCTTTTGTTCTGTGTGTGTGAAGAGGTTGAAGGGCCGATGATAGAGGAATACACATTTTCATTCAGTTACTCAAATTCCGAGAGCCAGGAGGTTTCAATGAATATCAGTCGCTCTGGAAACAAGAAGCATGGTGGAACATTCAAGTGTGACTCCACAACAGAAATTACCCCCAACCAGATGAGGTTTCTCAAGCCTCTAAACTTGGTCAAGAAGCTGCAAAGGGCTTGTCTAAGGAACCCTGTGAAGATTGAAGTAGCATCTAAATATTCTACCGTTGATACACTAAAGCAGCAGTATCGTTTTCTGCCGTCCCAGCACAAGGACTGTTATCTTGTATATATTCTGACTGAGAAGTGTCAATGTACAACTATGGTTTTTACTCGTACATGTGATGCAACACTCCTATTGGCTACGATGCTTCGAAATCTTGGTATAAGAGCCACCCCTATTAGTGGTCATATGAGCCAGTCAAAAAGACTTGGTGCCTTAAATATGTTTAAAGCTGGAGAGTGTAATGTACTTATCTGCACTGATGTGGCAAGTAGAGGATTGGATATTCCGTCGGTGGATATGGTTATTAATTATGATATTCCCTCAAATTCTAAGGAAAAGCATTTCCAGGTGATGCGGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

227

Amino Acids

25.78

Weight (kDa)

8.95

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	1 - 77	1.6e-16	HORMA domain
Helicase_C	PF00271	127 - 219	1.5e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47951 FvH4_6g52560
rosa_chinensis	RchiOBHm_Chr2g0149041
rosa_multiflora	Rmu_co8503557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121560
rosa_samantha	Rh1CG077300 Rh2BG095800 Rh2CG097700 Rh4DG259600 Rh5AG391900 Rh5DG408500 Rh7BG305700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	530
AciI	CCGC	1 cut(s)	676
AcsI	RAATTY	2 cut(s)	121, 646
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	4 cut(s)	38, 412, 433, 567
AfiI	CCNNNNNNNGG	2 cut(s)	367, 500
AflIII	ACRYGT	1 cut(s)	434
AgsI	TTSAA	4 cut(s)	77, 144, 190, 299
AjnI	CCWGG	2 cut(s)	132, 666
AleI	CACNNNNGTG	1 cut(s)	581
AluBI	AGCT	2 cut(s)	262, 551
AluI	AGCT	2 cut(s)	262, 551
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	262, 337
ApoI	RAATTY	2 cut(s)	121, 646
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
AseI	ATTAAT	1 cut(s)	627
AspS9I	GGNCC	2 cut(s)	80, 678
AsuHPI	GGTGA	1 cut(s)	682
AsuII	TTCGAA	1 cut(s)	469
AvaII	GGWCC	1 cut(s)	678
BanI	GGYRCC	1 cut(s)	530
BbvI	GCAGC	2 cut(s)	249, 349
BceAI	ACGGC	1 cut(s)	340
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	2 cut(s)	134, 668
BfaI	CTAG	1 cut(s)	682
BisI	GCNGC	2 cut(s)	263, 338
BlsI	GCNGC	2 cut(s)	264, 339
Bme1390I	CCNGG	2 cut(s)	134, 668
Bme18I	GGWCC	1 cut(s)	678
BmgT120I	GGNCC	2 cut(s)	80, 678
BmiI	GGNNCC	2 cut(s)	284, 532
BmrFI	CCNGG	2 cut(s)	134, 668
BmsI	GCATC	4 cut(s)	314, 430, 453, 663
BpmI	CTGGAG	1 cut(s)	573
Bpu14I	TTCGAA	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 500
Bse1I	ACTGG	1 cut(s)	514
BseBI	CCWGG	2 cut(s)	134, 668
BseLI	CCNNNNNNNGG	2 cut(s)	367, 500
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	514
BseXI	GCAGC	2 cut(s)	249, 349
BseYI	CCCAGC	1 cut(s)	360
BsgI	GTGCAG	1 cut(s)	559
BshFI	GGCC	1 cut(s)	82
BshNI	GGYRCC	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	2 cut(s)	367, 500
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	82
Bsp119I	TTCGAA	1 cut(s)	469
Bsp1407I	TGTACA	1 cut(s)	410
BspACI	CCGC	1 cut(s)	676
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	284, 532
BspT104I	TTCGAA	1 cut(s)	469
BspT107I	GGYRCC	1 cut(s)	530
BsrGI	TGTACA	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	514
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	134, 668
Bst4CI	ACNGT	2 cut(s)	322, 374
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	21
BstAUI	TGTACA	1 cut(s)	410
BstBI	TTCGAA	1 cut(s)	469
BstDEI	CTNAG	3 cut(s)	278, 396, 651
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNI	CCWGG	2 cut(s)	134, 668
BstNSI	RCATGY	1 cut(s)	438
BstSCI	CCNGG	2 cut(s)	132, 666
BstV1I	GCAGC	2 cut(s)	249, 349
BsuRI	GGCC	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	576
Cfr13I	GGNCC	2 cut(s)	80, 678
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	4 cut(s)	37, 411, 432, 566
CviAII	CATG	2 cut(s)	176, 435
CviJI	RGCY	9 cut(s)	82, 132, 241, 262, 272, 458, 488, 513, 551
CviKI_1	RGCY	9 cut(s)	82, 132, 241, 262, 272, 458, 488, 513, 551
CviQI	GTAC	4 cut(s)	37, 411, 432, 566
DdeI	CTNAG	3 cut(s)	278, 396, 651
DraI	TTTAAA	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	678
EcoRII	CCWGG	2 cut(s)	132, 666
FaeI	CATG	2 cut(s)	179, 438
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	2 cut(s)	175, 434
FauNDI	CATATG	1 cut(s)	507
Fnu4HI	GCNGC	2 cut(s)	263, 338
Fsp4HI	GCNGC	2 cut(s)	263, 338
FspBI	CTAG	1 cut(s)	682
GluI	GCNGC	2 cut(s)	263, 338
GsaI	CCCAGC	1 cut(s)	364
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	1 cut(s)	82
HgaI	GACGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	179, 438
HinfI	GANTC	1 cut(s)	197
HphI	GGTGA	1 cut(s)	682
Hpy188I	TCNGA	2 cut(s)	127, 393
Hpy188III	TCNNGA	2 cut(s)	162, 256
Hpy99I	CGWCG	1 cut(s)	613
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	322, 374
HpyCH4V	TGCA	4 cut(s)	28, 265, 443, 576
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	3 cut(s)	278, 396, 651
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	179, 438
Lsp1109I	GCAGC	2 cut(s)	249, 349
LweI	GCATC	4 cut(s)	314, 430, 453, 663
MaeI	CTAG	1 cut(s)	682
MaeIII	GTNAC	2 cut(s)	113, 194
MboII	GAAGA	3 cut(s)	43, 80, 304
MluCI	AATT	4 cut(s)	121, 210, 628, 646
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	7 cut(s)	64, 85, 130, 222, 252, 587, 652
MseI	TTAA	3 cut(s)	536, 546, 627
MslI	CAYNNNNRTG	2 cut(s)	190, 581
MspR9I	CCNGG	2 cut(s)	134, 668
MvaI	CCWGG	2 cut(s)	134, 668
MwoI	GCNNNNNNNGC	1 cut(s)	361
NdeI	CATATG	1 cut(s)	507
NlaIII	CATG	2 cut(s)	179, 438
NlaIV	GGNNCC	2 cut(s)	284, 532
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	1 cut(s)	438
NspV	TTCGAA	1 cut(s)	469
OliI	CACNNNNGTG	1 cut(s)	581
PciI	ACATGT	1 cut(s)	434
PkrI	GCNGC	2 cut(s)	264, 339
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PscI	ACATGT	1 cut(s)	434
PshBI	ATTAAT	1 cut(s)	627
Psp6I	CCWGG	2 cut(s)	132, 666
PspFI	CCCAGC	1 cut(s)	360
PspGI	CCWGG	2 cut(s)	132, 666
PspN4I	GGNNCC	2 cut(s)	284, 532
PspPI	GGNCC	2 cut(s)	80, 678
RsaI	GTAC	4 cut(s)	38, 412, 433, 567
RsaNI	GTAC	4 cut(s)	37, 411, 432, 566
RseI	CAYNNNNRTG	2 cut(s)	190, 581
SaqAI	TTAA	3 cut(s)	536, 546, 627
SatI	GCNGC	2 cut(s)	263, 338
Sau96I	GGNCC	2 cut(s)	80, 678
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	134, 668
SetI	ASST	8 cut(s)	13, 42, 75, 141, 233, 264, 553, 672
SfaNI	GCATC	4 cut(s)	314, 430, 453, 663
SfuI	TTCGAA	1 cut(s)	469
SinI	GGWCC	1 cut(s)	678
SmiMI	CAYNNNNRTG	2 cut(s)	190, 581
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	4 cut(s)	121, 210, 628, 646
SsiI	CCGC	1 cut(s)	676
SspI	AATATT	1 cut(s)	314
SspMI	CTAG	1 cut(s)	682
StyD4I	CCNGG	2 cut(s)	132, 666
TaaI	ACNGT	2 cut(s)	322, 374
TaqI	TCGA	1 cut(s)	469
TasI	AATT	4 cut(s)	121, 210, 628, 646
TatI	WGTACW	2 cut(s)	410, 565
Tru1I	TTAA	3 cut(s)	536, 546, 627
Tru9I	TTAA	3 cut(s)	536, 546, 627
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	262, 337
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	96, 161
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	1 cut(s)	583
VpaK11BI	GGWCC	1 cut(s)	678
VspI	ATTAAT	1 cut(s)	627
XapI	RAATTY	2 cut(s)	121, 646
XceI	RCATGY	1 cut(s)	438
XspI	CTAG	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.