Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0017704

Physical Location & Seq

Genomic Coordinates Reverse (-)

47689311 .. 47701947

Gene Structure 12637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG259600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCCATATGGAAGTACCACACCTACAGTTTCAAACAACCTTGAAAACATACATATTGAAGTAGCATCTAAATATTCTACCGTTGATACACTAAAGCAGCAGTATCGTTTTCTGCCGTCCCAGCACAAGGACTGTTATGTTGTATATATTCTGACTGAGAAGTGTCAATGTACAACTATGGTTTTTACTCGTACATGTGATGCAACACTCCTATTGGCTACGATGCTTCGAAATCTTGGTATAAGAGCCACCCCTATTAGTGGTCATATGAGCCAGTCAAAAAGACTTGGTGCCTTAAATATGTTTAAAGCTGGAGAGTGTAATGTACTTATCTGCACTGATGTGGCAAGTAGAGGATTGGATATTCCGTCGGTGGATATGGTTATTAATTATGATATTCCCTCAAATTCTAAGGTGAGGCTTTCTATTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

144

Amino Acids

16.0

Weight (kDa)

8.49

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	48 - 138	1.6e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017704)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47951 FvH4_6g52560
rosa_chinensis	RchiOBHm_Chr2g0149041
rosa_multiflora	Rmu_co8503557.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121560
rosa_samantha	Rh1CG077300 Rh2BG095800 Rh2CG097700 Rh4DG259600 Rh5AG391900 Rh5DG408500 Rh7BG305700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	406
AfaI	GTAC	4 cut(s)	16, 172, 193, 327
AfiI	CCNNNNNNNGG	2 cut(s)	127, 260
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	33, 44, 59
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	406
AseI	ATTAAT	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	427
AsuII	TTCGAA	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	109
BceAI	ACGGC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	292
BmsI	GCATC	3 cut(s)	74, 190, 213
BpmI	CTGGAG	1 cut(s)	333
Bpu14I	TTCGAA	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 260
Bse1I	ACTGG	1 cut(s)	274
BseLI	CCNNNNNNNGG	2 cut(s)	127, 260
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	109
BseYI	CCCAGC	1 cut(s)	120
BsgI	GTGCAG	1 cut(s)	319
BshNI	GGYRCC	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	127, 260
BsmFI	GGGAC	1 cut(s)	103
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1407I	TGTACA	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	292
BspT104I	TTCGAA	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	274
Bst4CI	ACNGT	3 cut(s)	28, 82, 134
BstAUI	TGTACA	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	156, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	336
Csp6I	GTAC	4 cut(s)	15, 171, 192, 326
CviAII	CATG	1 cut(s)	195
CviJI	RGCY	5 cut(s)	218, 248, 273, 311, 421
CviKI_1	RGCY	5 cut(s)	218, 248, 273, 311, 421
CviQI	GTAC	4 cut(s)	15, 171, 192, 326
DdeI	CTNAG	2 cut(s)	156, 411
DraI	TTTAAA	1 cut(s)	307
FaeI	CATG	1 cut(s)	198
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	1 cut(s)	194
FauNDI	CATATG	2 cut(s)	7, 267
Fnu4HI	GCNGC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	98
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	333
Hin1II	CATG	1 cut(s)	198
HphI	GGTGA	1 cut(s)	427
Hpy188I	TCNGA	1 cut(s)	153
Hpy99I	CGWCG	1 cut(s)	373
HpyCH4III	ACNGT	3 cut(s)	28, 82, 134
HpyCH4V	TGCA	2 cut(s)	203, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	156, 411
Hsp92II	CATG	1 cut(s)	198
LpnPI	CCDG	3 cut(s)	134, 287, 297
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	3 cut(s)	74, 190, 213
MluCI	AATT	2 cut(s)	388, 406
MnlI	CCTC	3 cut(s)	347, 411, 412
MseI	TTAA	3 cut(s)	296, 306, 387
MslI	CAYNNNNRTG	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeI	CATATG	2 cut(s)	7, 267
NlaIII	CATG	1 cut(s)	198
NlaIV	GGNNCC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	198
NspV	TTCGAA	1 cut(s)	229
OliI	CACNNNNGTG	1 cut(s)	341
PciI	ACATGT	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	99
PscI	ACATGT	1 cut(s)	194
PshBI	ATTAAT	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	292
RsaI	GTAC	4 cut(s)	16, 172, 193, 327
RsaNI	GTAC	4 cut(s)	15, 171, 192, 326
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	3 cut(s)	296, 306, 387
SatI	GCNGC	1 cut(s)	98
SetI	ASST	4 cut(s)	25, 42, 313, 417
SfaNI	GCATC	3 cut(s)	74, 190, 213
SfcI	CTRYAG	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	388, 406
SspI	AATATT	1 cut(s)	74
TaaI	ACNGT	3 cut(s)	28, 82, 134
TaqI	TCGA	1 cut(s)	229
TasI	AATT	2 cut(s)	388, 406
TatI	WGTACW	2 cut(s)	170, 325
Tru1I	TTAA	3 cut(s)	296, 306, 387
Tru9I	TTAA	3 cut(s)	296, 306, 387
TscAI	CASTG	1 cut(s)	343
TseI	GCWGC	1 cut(s)	97
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	343
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	406
XceI	RCATGY	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.