TMV resistance protein N-like
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g49510 |
| rosa_laevigata | RLG00000021862 |
| rosa_multiflora | Rmu_sc0000648.1_g000014 Rmu_sc0035653.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00082140 Rroxscaffold_2G00082170 |
| rosa_rugosa | Rorug02G0539900 Rorug02G0539900 |
| rosa_samantha | Rh2AG611200 Rh2BG624800 |
| rosa_wichuraiana | Rw2G050720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 849 |
| AccII | CGCG | 1 cut(s) | 266 |
| AciI | CCGC | 2 cut(s) | 103, 473 |
| AclI | AACGTT | 1 cut(s) | 1517 |
| AclWI | GGATC | 3 cut(s) | 353, 366, 1010 |
| AcsI | RAATTY | 3 cut(s) | 634, 727, 1246 |
| AcuI | CTGAAG | 3 cut(s) | 70, 489, 1088 |
| AcyI | GRCGYC | 2 cut(s) | 144, 321 |
| AdeI | CACNNNGTG | 1 cut(s) | 73 |
| AfaI | GTAC | 3 cut(s) | 388, 1035, 1077 |
| AflII | CTTAAG | 1 cut(s) | 79 |
| AflIII | ACRYGT | 2 cut(s) | 72, 553 |
| AhlI | ACTAGT | 1 cut(s) | 796 |
| AjiI | CACGTC | 1 cut(s) | 73 |
| AleI | CACNNNNGTG | 1 cut(s) | 585 |
| AluBI | AGCT | 5 cut(s) | 84, 270, 331, 940, 1024 |
| AluI | AGCT | 5 cut(s) | 84, 270, 331, 940, 1024 |
| Alw21I | GWGCWC | 1 cut(s) | 272 |
| Alw26I | GTCTC | 1 cut(s) | 1121 |
| AlwI | GGATC | 3 cut(s) | 353, 366, 1010 |
| AoxI | GGCC | 5 cut(s) | 3, 121, 216, 1139, 1313 |
| ApeKI | GCWGC | 8 cut(s) | 189, 373, 376, 398, 509, 512, 747, 1024 |
| ApoI | RAATTY | 3 cut(s) | 634, 727, 1246 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 156, 188 |
| AseI | ATTAAT | 1 cut(s) | 1494 |
| AspLEI | GCGC | 3 cut(s) | 63, 134, 1222 |
| AspS9I | GGNCC | 3 cut(s) | 1139, 1170, 1313 |
| AsuC2I | CCSGG | 1 cut(s) | 971 |
| AsuHPI | GGTGA | 1 cut(s) | 106 |
| AsuII | TTCGAA | 1 cut(s) | 1250 |
| AvaII | GGWCC | 1 cut(s) | 1170 |
| BamHI | GGATCC | 1 cut(s) | 358 |
| BanII | GRGCYC | 1 cut(s) | 272 |
| Bbv12I | GWGCWC | 1 cut(s) | 272 |
| BbvI | GCAGC | 8 cut(s) | 176, 385, 388, 410, 496, 499, 759, 1011 |
| BccI | CCATC | 4 cut(s) | 248, 769, 1150, 1298 |
| BclI | TGATCA | 4 cut(s) | 406, 882, 1339, 1405 |
| BcnI | CCSGG | 1 cut(s) | 971 |
| BcoDI | GTCTC | 1 cut(s) | 1121 |
| BcuI | ACTAGT | 1 cut(s) | 796 |
| BfaI | CTAG | 8 cut(s) | 137, 477, 797, 941, 963, 1011, 1163, 1301 |
| BfoI | RGCGCY | 1 cut(s) | 135 |
| BfrI | CTTAAG | 1 cut(s) | 79 |
| BisI | GCNGC | 9 cut(s) | 190, 374, 377, 399, 474, 510, 513, 748, 1025 |
| BlsI | GCNGC | 9 cut(s) | 191, 375, 378, 400, 475, 511, 514, 749, 1026 |
| Bme1390I | CCNGG | 1 cut(s) | 971 |
| Bme18I | GGWCC | 1 cut(s) | 1170 |
| BmgBI | CACGTC | 1 cut(s) | 73 |
| BmgT120I | GGNCC | 3 cut(s) | 1139, 1170, 1313 |
| BmiI | GGNNCC | 5 cut(s) | 360, 818, 968, 1172, 1444 |
| BmrFI | CCNGG | 1 cut(s) | 971 |
| BmsI | GCATC | 6 cut(s) | 35, 496, 604, 687, 1381, 1413 |
| BoxI | GACNNNNGTC | 1 cut(s) | 324 |
| Bpu10I | CCTNAGC | 3 cut(s) | 271, 985, 1215 |
| Bpu14I | TTCGAA | 1 cut(s) | 1250 |
| BpuEI | CTTGAG | 3 cut(s) | 197, 580, 604 |
| BpuMI | CCSGG | 1 cut(s) | 971 |
| BsaBI | GATNNNNATC | 2 cut(s) | 174, 357 |
| BsaHI | GRCGYC | 2 cut(s) | 144, 321 |
| BsaJI | CCNNGG | 1 cut(s) | 1446 |
| Bse118I | RCCGGY | 2 cut(s) | 146, 323 |
| Bse1I | ACTGG | 2 cut(s) | 427, 946 |
| Bse8I | GATNNNNATC | 2 cut(s) | 174, 357 |
| BseDI | CCNNGG | 1 cut(s) | 1446 |
| BseGI | GGATG | 6 cut(s) | 292, 511, 619, 1142, 1396, 1478 |
| BseJI | GATNNNNATC | 2 cut(s) | 174, 357 |
| BseMII | CTCAG | 7 cut(s) | 285, 423, 867, 999, 1229, 1359, 1369 |
| BseNI | ACTGG | 2 cut(s) | 427, 946 |
| BseRI | GAGGAG | 1 cut(s) | 1139 |
| BseXI | GCAGC | 8 cut(s) | 176, 385, 388, 410, 496, 499, 759, 1011 |
| BsgI | GTGCAG | 1 cut(s) | 392 |
| Bsh1236I | CGCG | 1 cut(s) | 266 |
| BshFI | GGCC | 5 cut(s) | 5, 123, 218, 1141, 1315 |
| BsiHKAI | GWGCWC | 1 cut(s) | 272 |
| BsiSI | CCGG | 3 cut(s) | 147, 324, 970 |
| BslFI | GGGAC | 1 cut(s) | 1156 |
| BsmAI | GTCTC | 1 cut(s) | 1121 |
| BsmFI | GGGAC | 1 cut(s) | 1156 |
| BsmI | GAATGC | 1 cut(s) | 958 |
| BsnI | GGCC | 5 cut(s) | 5, 123, 218, 1141, 1315 |
| Bsp119I | TTCGAA | 1 cut(s) | 1250 |
| Bsp1286I | GDGCHC | 1 cut(s) | 272 |
| BspACI | CCGC | 2 cut(s) | 103, 473 |
| BspANI | GGCC | 5 cut(s) | 5, 123, 218, 1141, 1315 |
| BspCNI | CTCAG | 7 cut(s) | 284, 424, 868, 998, 1228, 1360, 1368 |
| BspFNI | CGCG | 1 cut(s) | 266 |
| BspHI | TCATGA | 1 cut(s) | 1156 |
| BspLI | GGNNCC | 5 cut(s) | 360, 818, 968, 1172, 1444 |
| BspPI | GGATC | 3 cut(s) | 353, 366, 1010 |
| BspT104I | TTCGAA | 1 cut(s) | 1250 |
| BspTI | CTTAAG | 1 cut(s) | 79 |
| BsrFI | RCCGGY | 2 cut(s) | 146, 323 |
| BsrI | ACTGG | 2 cut(s) | 427, 946 |
| BssAI | RCCGGY | 2 cut(s) | 146, 323 |
| BssECI | CCNNGG | 1 cut(s) | 1446 |
| BssNI | GRCGYC | 2 cut(s) | 144, 321 |
| BssT1I | CCWWGG | 1 cut(s) | 1446 |
| Bst4CI | ACNGT | 1 cut(s) | 1089 |
| BstACI | GRCGYC | 2 cut(s) | 144, 321 |
| BstAFI | CTTAAG | 1 cut(s) | 79 |
| BstBI | TTCGAA | 1 cut(s) | 1250 |
| BstC8I | GCNNGC | 3 cut(s) | 65, 148, 268 |
| BstDEI | CTNAG | 8 cut(s) | 271, 432, 876, 985, 1028, 1215, 1355, 1368 |
| BstF5I | GGATG | 6 cut(s) | 292, 511, 619, 1142, 1396, 1478 |
| BstFNI | CGCG | 1 cut(s) | 266 |
| BstH2I | RGCGCY | 1 cut(s) | 135 |
| BstHHI | GCGC | 3 cut(s) | 63, 134, 1222 |
| BstMAI | GTCTC | 1 cut(s) | 1121 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 90, 129, 337, 713, 990, 1065 |
| BstNSI | RCATGY | 2 cut(s) | 26, 557 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 324 |
| BstSCI | CCNGG | 1 cut(s) | 969 |
| BstUI | CGCG | 1 cut(s) | 266 |
| BstV1I | GCAGC | 8 cut(s) | 176, 385, 388, 410, 496, 499, 759, 1011 |
| BstX2I | RGATCY | 2 cut(s) | 358, 1015 |
| BstYI | RGATCY | 2 cut(s) | 358, 1015 |
| BsuRI | GGCC | 5 cut(s) | 5, 123, 218, 1141, 1315 |
| BtgZI | GCGATG | 2 cut(s) | 366, 381 |
| BtrI | CACGTC | 1 cut(s) | 73 |
| BtsCI | GGATG | 6 cut(s) | 292, 511, 619, 1142, 1396, 1478 |
| BtsI | GCAGTG | 1 cut(s) | 1477 |
| BtsIMutI | CAGTG | 1 cut(s) | 1477 |
| Cac8I | GCNNGC | 3 cut(s) | 65, 148, 268 |
| CciI | TCATGA | 1 cut(s) | 1156 |
| CfoI | GCGC | 3 cut(s) | 63, 134, 1222 |
| Cfr10I | RCCGGY | 2 cut(s) | 146, 323 |
| Cfr13I | GGNCC | 3 cut(s) | 1139, 1170, 1313 |
| CseI | GACGC | 3 cut(s) | 152, 329, 584 |
| Csp6I | GTAC | 3 cut(s) | 387, 1034, 1076 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 591, 626 |
| CviAII | CATG | 6 cut(s) | 23, 199, 413, 554, 631, 1157 |
| CviQI | GTAC | 3 cut(s) | 387, 1034, 1076 |
| DdeI | CTNAG | 8 cut(s) | 271, 432, 876, 985, 1028, 1215, 1355, 1368 |
| DraIII | CACNNNGTG | 1 cut(s) | 73 |
| Ecl136II | GAGCTC | 1 cut(s) | 270 |
| Eco130I | CCWWGG | 1 cut(s) | 1446 |
| Eco147I | AGGCCT | 1 cut(s) | 123 |
| Eco24I | GRGCYC | 1 cut(s) | 272 |
| Eco32I | GATATC | 1 cut(s) | 569 |
| Eco47I | GGWCC | 1 cut(s) | 1170 |
| Eco53kI | GAGCTC | 1 cut(s) | 270 |
| Eco57I | CTGAAG | 3 cut(s) | 70, 489, 1088 |
| EcoICRI | GAGCTC | 1 cut(s) | 270 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1170, 1313 |
| EcoRI | GAATTC | 1 cut(s) | 634 |
| EcoRV | GATATC | 1 cut(s) | 569 |
| EcoT14I | CCWWGG | 1 cut(s) | 1446 |
| EcoT22I | ATGCAT | 2 cut(s) | 28, 1276 |
| EcoT38I | GRGCYC | 1 cut(s) | 272 |
| ErhI | CCWWGG | 1 cut(s) | 1446 |
| FaeI | CATG | 6 cut(s) | 26, 202, 416, 557, 634, 1160 |
| FaqI | GGGAC | 1 cut(s) | 1156 |
| FatI | CATG | 6 cut(s) | 22, 198, 412, 553, 630, 1156 |
| FauI | CCCGC | 1 cut(s) | 110 |
| FbaI | TGATCA | 4 cut(s) | 406, 882, 1339, 1405 |
| FblI | GTMKAC | 1 cut(s) | 849 |
| Fnu4HI | GCNGC | 9 cut(s) | 190, 374, 377, 399, 474, 510, 513, 748, 1025 |
| FokI | GGATG | 6 cut(s) | 299, 518, 626, 1129, 1403, 1465 |
| FriOI | GRGCYC | 1 cut(s) | 272 |
| Fsp4HI | GCNGC | 9 cut(s) | 190, 374, 377, 399, 474, 510, 513, 748, 1025 |
| FspBI | CTAG | 8 cut(s) | 137, 477, 797, 941, 963, 1011, 1163, 1301 |
| GlaI | GCGC | 3 cut(s) | 62, 133, 1221 |
| GluI | GCNGC | 9 cut(s) | 190, 374, 377, 399, 474, 510, 513, 748, 1025 |
| HaeII | RGCGCY | 1 cut(s) | 135 |
| HaeIII | GGCC | 5 cut(s) | 5, 123, 218, 1141, 1315 |
| HapII | CCGG | 3 cut(s) | 147, 324, 970 |
| HgaI | GACGC | 3 cut(s) | 152, 329, 584 |
| HhaI | GCGC | 3 cut(s) | 63, 134, 1222 |
| Hin1I | GRCGYC | 2 cut(s) | 144, 321 |
| Hin1II | CATG | 6 cut(s) | 26, 202, 416, 557, 634, 1160 |
| Hin6I | GCGC | 3 cut(s) | 61, 132, 1220 |
| HinP1I | GCGC | 3 cut(s) | 61, 132, 1220 |
| HincII | GTYRAC | 3 cut(s) | 142, 465, 482 |
| HindII | GTYRAC | 3 cut(s) | 142, 465, 482 |
| HindIII | AAGCTT | 1 cut(s) | 82 |
| HinfI | GANTC | 3 cut(s) | 234, 687, 1280 |
| HpaII | CCGG | 3 cut(s) | 147, 324, 970 |
| HphI | GGTGA | 1 cut(s) | 106 |
| Hpy166II | GTNNAC | 7 cut(s) | 142, 465, 482, 769, 841, 850, 1034 |
| Hpy188I | TCNGA | 8 cut(s) | 89, 205, 658, 826, 933, 1107, 1136, 1434 |
| Hpy8I | GTNNAC | 7 cut(s) | 142, 465, 482, 769, 841, 850, 1034 |
| Hpy99I | CGWCG | 2 cut(s) | 34, 74 |
| HpyAV | CCTTC | 5 cut(s) | 49, 863, 1112, 1322, 1408 |
| HpyCH4III | ACNGT | 1 cut(s) | 1089 |
| HpyCH4IV | ACGT | 2 cut(s) | 72, 1517 |
| HpyCH4V | TGCA | 9 cut(s) | 26, 373, 502, 808, 956, 1240, 1274, 1394, 1426 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 90, 129, 337, 713, 990, 1065 |
| HpyF3I | CTNAG | 8 cut(s) | 271, 432, 876, 985, 1028, 1215, 1355, 1368 |
| HpySE526I | ACGT | 2 cut(s) | 72, 1517 |
| Hsp92I | GRCGYC | 2 cut(s) | 144, 321 |
| Hsp92II | CATG | 6 cut(s) | 26, 202, 416, 557, 634, 1160 |
| HspAI | GCGC | 3 cut(s) | 61, 132, 1220 |
| KroI | GCCGGC | 1 cut(s) | 146 |
| KroNI | GCCGGC | 1 cut(s) | 148 |
| Ksp22I | TGATCA | 4 cut(s) | 406, 882, 1339, 1405 |
| LmnI | GCTCC | 2 cut(s) | 966, 1442 |
| Lsp1109I | GCAGC | 8 cut(s) | 176, 385, 388, 410, 496, 499, 759, 1011 |
| LweI | GCATC | 6 cut(s) | 35, 496, 604, 687, 1381, 1413 |
| MaeI | CTAG | 8 cut(s) | 137, 477, 797, 941, 963, 1011, 1163, 1301 |
| MaeII | ACGT | 2 cut(s) | 72, 1517 |
| MaeIII | GTNAC | 1 cut(s) | 311 |
| MboII | GAAGA | 2 cut(s) | 170, 912 |
| MflI | RGATCY | 2 cut(s) | 358, 1015 |
| MhlI | GDGCHC | 1 cut(s) | 272 |
| MluCI | AATT | 8 cut(s) | 543, 634, 727, 1224, 1246, 1383, 1427, 1495 |
| MlyI | GAGTC | 1 cut(s) | 1274 |
| MmeI | TCCRAC | 2 cut(s) | 423, 1420 |
| Mph1103I | ATGCAT | 2 cut(s) | 28, 1276 |
| MreI | CGCCGGCG | 1 cut(s) | 146 |
| MroNI | GCCGGC | 1 cut(s) | 146 |
| MseI | TTAA | 5 cut(s) | 80, 759, 864, 1113, 1494 |
| MslI | CAYNNNNRTG | 3 cut(s) | 224, 245, 585 |
| MspA1I | CMGCKG | 1 cut(s) | 1024 |
| MspCI | CTTAAG | 1 cut(s) | 79 |
| MspI | CCGG | 3 cut(s) | 147, 324, 970 |
| MspR9I | CCNGG | 1 cut(s) | 971 |
| Mva1269I | GAATGC | 1 cut(s) | 958 |
| MvnI | CGCG | 1 cut(s) | 266 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 90, 129, 337, 713, 990, 1065 |
| NaeI | GCCGGC | 1 cut(s) | 148 |
| NciI | CCSGG | 1 cut(s) | 971 |
| NgoMIV | GCCGGC | 1 cut(s) | 146 |
| NlaIII | CATG | 6 cut(s) | 26, 202, 416, 557, 634, 1160 |
| NlaIV | GGNNCC | 5 cut(s) | 360, 818, 968, 1172, 1444 |
| NsiI | ATGCAT | 2 cut(s) | 28, 1276 |
| NspI | RCATGY | 2 cut(s) | 26, 557 |
| NspV | TTCGAA | 1 cut(s) | 1250 |
| OliI | CACNNNNGTG | 1 cut(s) | 585 |
| PagI | TCATGA | 1 cut(s) | 1156 |
| PceI | AGGCCT | 1 cut(s) | 123 |
| PciI | ACATGT | 1 cut(s) | 553 |
| PctI | GAATGC | 1 cut(s) | 958 |
| PdiI | GCCGGC | 1 cut(s) | 148 |
| PfeI | GAWTC | 2 cut(s) | 234, 687 |
| PflFI | GACNNNGTC | 1 cut(s) | 170 |
| PkrI | GCNGC | 9 cut(s) | 191, 375, 378, 400, 475, 511, 514, 749, 1026 |
| PleI | GAGTC | 1 cut(s) | 1274 |
| PpsI | GAGTC | 1 cut(s) | 1274 |
| PpuMI | RGGWCCY | 1 cut(s) | 1170 |
| PscI | ACATGT | 1 cut(s) | 553 |
| PshAI | GACNNNNGTC | 1 cut(s) | 324 |
| PshBI | ATTAAT | 1 cut(s) | 1494 |
| Psp124BI | GAGCTC | 1 cut(s) | 272 |
| Psp1406I | AACGTT | 1 cut(s) | 1517 |
| Psp5II | RGGWCCY | 1 cut(s) | 1170 |
| PspN4I | GGNNCC | 5 cut(s) | 360, 818, 968, 1172, 1444 |
| PspPI | GGNCC | 3 cut(s) | 1139, 1170, 1313 |
| PspPPI | RGGWCCY | 1 cut(s) | 1170 |
| PsuI | RGATCY | 2 cut(s) | 358, 1015 |
| PsyI | GACNNNGTC | 1 cut(s) | 170 |
| PvuII | CAGCTG | 1 cut(s) | 1024 |
| RsaI | GTAC | 3 cut(s) | 388, 1035, 1077 |
| RsaNI | GTAC | 3 cut(s) | 387, 1034, 1076 |
| RseI | CAYNNNNRTG | 3 cut(s) | 224, 245, 585 |
| SacI | GAGCTC | 1 cut(s) | 272 |
| SaqAI | TTAA | 5 cut(s) | 80, 759, 864, 1113, 1494 |
| SatI | GCNGC | 9 cut(s) | 190, 374, 377, 399, 474, 510, 513, 748, 1025 |
| Sau96I | GGNCC | 3 cut(s) | 1139, 1170, 1313 |
| SchI | GAGTC | 1 cut(s) | 1274 |
| ScrFI | CCNGG | 1 cut(s) | 971 |
| SduI | GDGCHC | 1 cut(s) | 272 |
| SfaNI | GCATC | 6 cut(s) | 35, 496, 604, 687, 1381, 1413 |
| SfuI | TTCGAA | 1 cut(s) | 1250 |
| SgrAI | CRCCGGYG | 1 cut(s) | 146 |
| SinI | GGWCC | 1 cut(s) | 1170 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 224, 245, 585 |
| SmlI | CTYRAG | 4 cut(s) | 79, 212, 559, 583 |
| SmoI | CTYRAG | 4 cut(s) | 79, 212, 559, 583 |
| SpeI | ACTAGT | 1 cut(s) | 796 |
| Sse9I | AATT | 8 cut(s) | 543, 634, 727, 1224, 1246, 1383, 1427, 1495 |
| SseBI | AGGCCT | 1 cut(s) | 123 |
| SsiI | CCGC | 2 cut(s) | 103, 473 |
| SspMI | CTAG | 8 cut(s) | 137, 477, 797, 941, 963, 1011, 1163, 1301 |
| SstI | GAGCTC | 1 cut(s) | 272 |
| StuI | AGGCCT | 1 cut(s) | 123 |
| StyD4I | CCNGG | 1 cut(s) | 969 |
| StyI | CCWWGG | 1 cut(s) | 1446 |
| TaaI | ACNGT | 1 cut(s) | 1089 |
| TaiI | ACGT | 2 cut(s) | 75, 1520 |
| TaqI | TCGA | 2 cut(s) | 690, 1250 |
| TasI | AATT | 8 cut(s) | 543, 634, 727, 1224, 1246, 1383, 1427, 1495 |
| TatI | WGTACW | 1 cut(s) | 1033 |
| TauI | GCSGC | 1 cut(s) | 476 |
| TfiI | GAWTC | 2 cut(s) | 234, 687 |
| Tru1I | TTAA | 5 cut(s) | 80, 759, 864, 1113, 1494 |
| Tru9I | TTAA | 5 cut(s) | 80, 759, 864, 1113, 1494 |
| TscAI | CASTG | 1 cut(s) | 1477 |
| TseI | GCWGC | 8 cut(s) | 189, 373, 376, 398, 509, 512, 747, 1024 |
| TspDTI | ATGAA | 7 cut(s) | 429, 523, 647, 722, 906, 907, 1467 |
| TspGWI | ACGGA | 1 cut(s) | 1213 |
| TspRI | CASTG | 1 cut(s) | 1477 |
| Tth111I | GACNNNGTC | 1 cut(s) | 170 |
| Vha464I | CTTAAG | 1 cut(s) | 79 |
| VpaK11BI | GGWCC | 1 cut(s) | 1170 |
| VspI | ATTAAT | 1 cut(s) | 1494 |
| XapI | RAATTY | 3 cut(s) | 634, 727, 1246 |
| XbaI | TCTAGA | 1 cut(s) | 1162 |
| XceI | RCATGY | 2 cut(s) | 26, 557 |
| XmiI | GTMKAC | 1 cut(s) | 849 |
| XspI | CTAG | 8 cut(s) | 137, 477, 797, 941, 963, 1011, 1163, 1301 |
| Zsp2I | ATGCAT | 2 cut(s) | 28, 1276 |