FvH4_6g49510

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
37066830 .. 37069448
2619 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49510.t1

Sequence Viewer

Length: 1530 bp
ATGGCCTCATACACAACAATACATGCATCGTCGTTTTCCTTCTTTTCGTCAGCAACAAGGCGCAGGCACGACGTGTTCTTAAGCTTCAGAGGCGAGGACACCCGCCACAACATCACCAAAGGCCTCCACAGCGCCCTAGTTGACGCCGGCGTTCCCACATTCAAAGACGATGTCAATCTTCAAAAGGGCTGCGAGATCATGTCTGATCTGCTCAAGGCCATACAGATGTCAAGAATCGCCATCATAGTGTTCTCCAAGAACTACGCGAGCTCAGGGTGGTGTCTGGATGAGTTGGTCAAGATCGTAGAGTGTAACAAGGACGCCGGTCAGCTCATAATGCCTATTTTCTGCGATGTGGATCCTTGCGATGTGCAGCAGCAGACGGGTACATTTTCAGCAGCACTTGATCAGCATGAAAGGACTGGCAGGACTGAGGACAAGTTGGAGGCTTGGAGGACATCGTTGACTGAAGCGGCTAGTCAACCTTATGGCTTTGATATGCAGGATGCTGCTGCTTGGCTTCAATCAAAGTTCATCAAGGAAATTGTAAAACATGTCTTGAGTAGATATCAAGACGCACACTTGAGTGTTTCCATTTTCCCACCCAGATTGGATGCTGGTAAAGAATACATGAATTCTTTGTTAGGTGTAATATCAGATGACATTCTCATAATAGGCATCTGTGGAATCGACAAAACTGATTTGGCACAAGAAGCGTATGACCAGAATTTTCATAGGTTTGAAAGCAGCAGTTTTATTAAAGATGTGAACAAGATGGCAGAACAACCCAATGGACTAGTTGCCTTGCAAAAGAGGTTCCTTTCAGATATGCTGGAAGTGGACAATGTAGACATAAATGATGTTAAGGAAGGAACTGAGTTGATCAAATATGAAGCACGAAGAAAAAGAGTGCTTTTCATTCTTGACAATCTGAATAAGCTAGACCAGTTGAATGCACTTGCTAGGAGCCGGGATTGGTTTGGCTCAGGAAGCAGAATAGTGATAACTACTAGAGATCCACAGCTGCTAAGTGTACTTGAAGTTGATAATGTATATGGCGAACAAGGCATAGAGGTACTTGAAACACAGTTTCAGCAGAACCTTCAGATGATTAAAGATATGGAGGAGACTATCAGAGGGCCATCCTTTCAGGCTCATGATCTAGAGAGGTCCCTTATCGCTAAAATAGAAGCAGAACGGAGAAAGAACAATGCTCAGGCGCAAATTATAGCAGAGTTGCAGAAAAATTCGAAATCAAGTTTCCCCTTGTATGCATTAGACTCAACAACAGATGTTCTACTAGATGGAAAAGGGCCTGAAACTTTTGAAGGATATGATGATCACGAAGCCCTGCTCAGTATATTTGCTGAGAATGAGATGATAATTGGGGATGCAAATGTAAATGATCAGTTGAAGGCAAAGATGCAATTTCTGAATGTTGGAGCCAAGGATTTCAATAAGGCAGTAAGCAGTGGTTCATCCAGCAAAGGCATTAATTCAGGGAGGGAAGCAGGAACGTTTGTAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

510

Amino Acids

57.0

Weight (kDa)

5.07

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 23 - 191 2e-46 TIR domain
TIR_2 PF13676 25 - 124 9.9e-13 TIR domain
NB-ARC PF00931 222 - 344 6.5e-07 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018068)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 849
AccII CGCG 1 cut(s) 266
AciI CCGC 2 cut(s) 103, 473
AclI AACGTT 1 cut(s) 1517
AclWI GGATC 3 cut(s) 353, 366, 1010
AcsI RAATTY 3 cut(s) 634, 727, 1246
AcuI CTGAAG 3 cut(s) 70, 489, 1088
AcyI GRCGYC 2 cut(s) 144, 321
AdeI CACNNNGTG 1 cut(s) 73
AfaI GTAC 3 cut(s) 388, 1035, 1077
AflII CTTAAG 1 cut(s) 79
AflIII ACRYGT 2 cut(s) 72, 553
AhlI ACTAGT 1 cut(s) 796
AjiI CACGTC 1 cut(s) 73
AleI CACNNNNGTG 1 cut(s) 585
AluBI AGCT 5 cut(s) 84, 270, 331, 940, 1024
AluI AGCT 5 cut(s) 84, 270, 331, 940, 1024
Alw21I GWGCWC 1 cut(s) 272
Alw26I GTCTC 1 cut(s) 1121
AlwI GGATC 3 cut(s) 353, 366, 1010
AoxI GGCC 5 cut(s) 3, 121, 216, 1139, 1313
ApeKI GCWGC 8 cut(s) 189, 373, 376, 398, 509, 512, 747, 1024
ApoI RAATTY 3 cut(s) 634, 727, 1246
ArsI GACNNNNNNTTYG 2 cut(s) 156, 188
AseI ATTAAT 1 cut(s) 1494
AspLEI GCGC 3 cut(s) 63, 134, 1222
AspS9I GGNCC 3 cut(s) 1139, 1170, 1313
AsuC2I CCSGG 1 cut(s) 971
AsuHPI GGTGA 1 cut(s) 106
AsuII TTCGAA 1 cut(s) 1250
AvaII GGWCC 1 cut(s) 1170
BamHI GGATCC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 8 cut(s) 176, 385, 388, 410, 496, 499, 759, 1011
BccI CCATC 4 cut(s) 248, 769, 1150, 1298
BclI TGATCA 4 cut(s) 406, 882, 1339, 1405
BcnI CCSGG 1 cut(s) 971
BcoDI GTCTC 1 cut(s) 1121
BcuI ACTAGT 1 cut(s) 796
BfaI CTAG 8 cut(s) 137, 477, 797, 941, 963, 1011, 1163, 1301
BfoI RGCGCY 1 cut(s) 135
BfrI CTTAAG 1 cut(s) 79
BisI GCNGC 9 cut(s) 190, 374, 377, 399, 474, 510, 513, 748, 1025
BlsI GCNGC 9 cut(s) 191, 375, 378, 400, 475, 511, 514, 749, 1026
Bme1390I CCNGG 1 cut(s) 971
Bme18I GGWCC 1 cut(s) 1170
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 3 cut(s) 1139, 1170, 1313
BmiI GGNNCC 5 cut(s) 360, 818, 968, 1172, 1444
BmrFI CCNGG 1 cut(s) 971
BmsI GCATC 6 cut(s) 35, 496, 604, 687, 1381, 1413
BoxI GACNNNNGTC 1 cut(s) 324
Bpu10I CCTNAGC 3 cut(s) 271, 985, 1215
Bpu14I TTCGAA 1 cut(s) 1250
BpuEI CTTGAG 3 cut(s) 197, 580, 604
BpuMI CCSGG 1 cut(s) 971
BsaBI GATNNNNATC 2 cut(s) 174, 357
BsaHI GRCGYC 2 cut(s) 144, 321
BsaJI CCNNGG 1 cut(s) 1446
Bse118I RCCGGY 2 cut(s) 146, 323
Bse1I ACTGG 2 cut(s) 427, 946
Bse8I GATNNNNATC 2 cut(s) 174, 357
BseDI CCNNGG 1 cut(s) 1446
BseGI GGATG 6 cut(s) 292, 511, 619, 1142, 1396, 1478
BseJI GATNNNNATC 2 cut(s) 174, 357
BseMII CTCAG 7 cut(s) 285, 423, 867, 999, 1229, 1359, 1369
BseNI ACTGG 2 cut(s) 427, 946
BseRI GAGGAG 1 cut(s) 1139
BseXI GCAGC 8 cut(s) 176, 385, 388, 410, 496, 499, 759, 1011
BsgI GTGCAG 1 cut(s) 392
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 5 cut(s) 5, 123, 218, 1141, 1315
BsiHKAI GWGCWC 1 cut(s) 272
BsiSI CCGG 3 cut(s) 147, 324, 970
BslFI GGGAC 1 cut(s) 1156
BsmAI GTCTC 1 cut(s) 1121
BsmFI GGGAC 1 cut(s) 1156
BsmI GAATGC 1 cut(s) 958
BsnI GGCC 5 cut(s) 5, 123, 218, 1141, 1315
Bsp119I TTCGAA 1 cut(s) 1250
Bsp1286I GDGCHC 1 cut(s) 272
BspACI CCGC 2 cut(s) 103, 473
BspANI GGCC 5 cut(s) 5, 123, 218, 1141, 1315
BspCNI CTCAG 7 cut(s) 284, 424, 868, 998, 1228, 1360, 1368
BspFNI CGCG 1 cut(s) 266
BspHI TCATGA 1 cut(s) 1156
BspLI GGNNCC 5 cut(s) 360, 818, 968, 1172, 1444
BspPI GGATC 3 cut(s) 353, 366, 1010
BspT104I TTCGAA 1 cut(s) 1250
BspTI CTTAAG 1 cut(s) 79
BsrFI RCCGGY 2 cut(s) 146, 323
BsrI ACTGG 2 cut(s) 427, 946
BssAI RCCGGY 2 cut(s) 146, 323
BssECI CCNNGG 1 cut(s) 1446
BssNI GRCGYC 2 cut(s) 144, 321
BssT1I CCWWGG 1 cut(s) 1446
Bst4CI ACNGT 1 cut(s) 1089
BstACI GRCGYC 2 cut(s) 144, 321
BstAFI CTTAAG 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 1250
BstC8I GCNNGC 3 cut(s) 65, 148, 268
BstDEI CTNAG 8 cut(s) 271, 432, 876, 985, 1028, 1215, 1355, 1368
BstF5I GGATG 6 cut(s) 292, 511, 619, 1142, 1396, 1478
BstFNI CGCG 1 cut(s) 266
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 3 cut(s) 63, 134, 1222
BstMAI GTCTC 1 cut(s) 1121
BstMWI GCNNNNNNNGC 6 cut(s) 90, 129, 337, 713, 990, 1065
BstNSI RCATGY 2 cut(s) 26, 557
BstPAI GACNNNNGTC 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 969
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 8 cut(s) 176, 385, 388, 410, 496, 499, 759, 1011
BstX2I RGATCY 2 cut(s) 358, 1015
BstYI RGATCY 2 cut(s) 358, 1015
BsuRI GGCC 5 cut(s) 5, 123, 218, 1141, 1315
BtgZI GCGATG 2 cut(s) 366, 381
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 6 cut(s) 292, 511, 619, 1142, 1396, 1478
BtsI GCAGTG 1 cut(s) 1477
BtsIMutI CAGTG 1 cut(s) 1477
Cac8I GCNNGC 3 cut(s) 65, 148, 268
CciI TCATGA 1 cut(s) 1156
CfoI GCGC 3 cut(s) 63, 134, 1222
Cfr10I RCCGGY 2 cut(s) 146, 323
Cfr13I GGNCC 3 cut(s) 1139, 1170, 1313
CseI GACGC 3 cut(s) 152, 329, 584
Csp6I GTAC 3 cut(s) 387, 1034, 1076
CspCI CAANNNNNGTGG 2 cut(s) 591, 626
CviAII CATG 6 cut(s) 23, 199, 413, 554, 631, 1157
CviQI GTAC 3 cut(s) 387, 1034, 1076
DdeI CTNAG 8 cut(s) 271, 432, 876, 985, 1028, 1215, 1355, 1368
DraIII CACNNNGTG 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 1446
Eco147I AGGCCT 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 272
Eco32I GATATC 1 cut(s) 569
Eco47I GGWCC 1 cut(s) 1170
Eco53kI GAGCTC 1 cut(s) 270
Eco57I CTGAAG 3 cut(s) 70, 489, 1088
EcoICRI GAGCTC 1 cut(s) 270
EcoO109I RGGNCCY 2 cut(s) 1170, 1313
EcoRI GAATTC 1 cut(s) 634
EcoRV GATATC 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 1446
EcoT22I ATGCAT 2 cut(s) 28, 1276
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 1446
FaeI CATG 6 cut(s) 26, 202, 416, 557, 634, 1160
FaqI GGGAC 1 cut(s) 1156
FatI CATG 6 cut(s) 22, 198, 412, 553, 630, 1156
FauI CCCGC 1 cut(s) 110
FbaI TGATCA 4 cut(s) 406, 882, 1339, 1405
FblI GTMKAC 1 cut(s) 849
Fnu4HI GCNGC 9 cut(s) 190, 374, 377, 399, 474, 510, 513, 748, 1025
FokI GGATG 6 cut(s) 299, 518, 626, 1129, 1403, 1465
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 9 cut(s) 190, 374, 377, 399, 474, 510, 513, 748, 1025
FspBI CTAG 8 cut(s) 137, 477, 797, 941, 963, 1011, 1163, 1301
GlaI GCGC 3 cut(s) 62, 133, 1221
GluI GCNGC 9 cut(s) 190, 374, 377, 399, 474, 510, 513, 748, 1025
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 5 cut(s) 5, 123, 218, 1141, 1315
HapII CCGG 3 cut(s) 147, 324, 970
HgaI GACGC 3 cut(s) 152, 329, 584
HhaI GCGC 3 cut(s) 63, 134, 1222
Hin1I GRCGYC 2 cut(s) 144, 321
Hin1II CATG 6 cut(s) 26, 202, 416, 557, 634, 1160
Hin6I GCGC 3 cut(s) 61, 132, 1220
HinP1I GCGC 3 cut(s) 61, 132, 1220
HincII GTYRAC 3 cut(s) 142, 465, 482
HindII GTYRAC 3 cut(s) 142, 465, 482
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 3 cut(s) 234, 687, 1280
HpaII CCGG 3 cut(s) 147, 324, 970
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 7 cut(s) 142, 465, 482, 769, 841, 850, 1034
Hpy188I TCNGA 8 cut(s) 89, 205, 658, 826, 933, 1107, 1136, 1434
Hpy8I GTNNAC 7 cut(s) 142, 465, 482, 769, 841, 850, 1034
Hpy99I CGWCG 2 cut(s) 34, 74
HpyAV CCTTC 5 cut(s) 49, 863, 1112, 1322, 1408
HpyCH4III ACNGT 1 cut(s) 1089
HpyCH4IV ACGT 2 cut(s) 72, 1517
HpyCH4V TGCA 9 cut(s) 26, 373, 502, 808, 956, 1240, 1274, 1394, 1426
HpyF10VI GCNNNNNNNGC 6 cut(s) 90, 129, 337, 713, 990, 1065
HpyF3I CTNAG 8 cut(s) 271, 432, 876, 985, 1028, 1215, 1355, 1368
HpySE526I ACGT 2 cut(s) 72, 1517
Hsp92I GRCGYC 2 cut(s) 144, 321
Hsp92II CATG 6 cut(s) 26, 202, 416, 557, 634, 1160
HspAI GCGC 3 cut(s) 61, 132, 1220
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Ksp22I TGATCA 4 cut(s) 406, 882, 1339, 1405
LmnI GCTCC 2 cut(s) 966, 1442
Lsp1109I GCAGC 8 cut(s) 176, 385, 388, 410, 496, 499, 759, 1011
LweI GCATC 6 cut(s) 35, 496, 604, 687, 1381, 1413
MaeI CTAG 8 cut(s) 137, 477, 797, 941, 963, 1011, 1163, 1301
MaeII ACGT 2 cut(s) 72, 1517
MaeIII GTNAC 1 cut(s) 311
MboII GAAGA 2 cut(s) 170, 912
MflI RGATCY 2 cut(s) 358, 1015
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 8 cut(s) 543, 634, 727, 1224, 1246, 1383, 1427, 1495
MlyI GAGTC 1 cut(s) 1274
MmeI TCCRAC 2 cut(s) 423, 1420
Mph1103I ATGCAT 2 cut(s) 28, 1276
MreI CGCCGGCG 1 cut(s) 146
MroNI GCCGGC 1 cut(s) 146
MseI TTAA 5 cut(s) 80, 759, 864, 1113, 1494
MslI CAYNNNNRTG 3 cut(s) 224, 245, 585
MspA1I CMGCKG 1 cut(s) 1024
MspCI CTTAAG 1 cut(s) 79
MspI CCGG 3 cut(s) 147, 324, 970
MspR9I CCNGG 1 cut(s) 971
Mva1269I GAATGC 1 cut(s) 958
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 6 cut(s) 90, 129, 337, 713, 990, 1065
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 1 cut(s) 971
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 6 cut(s) 26, 202, 416, 557, 634, 1160
NlaIV GGNNCC 5 cut(s) 360, 818, 968, 1172, 1444
NsiI ATGCAT 2 cut(s) 28, 1276
NspI RCATGY 2 cut(s) 26, 557
NspV TTCGAA 1 cut(s) 1250
OliI CACNNNNGTG 1 cut(s) 585
PagI TCATGA 1 cut(s) 1156
PceI AGGCCT 1 cut(s) 123
PciI ACATGT 1 cut(s) 553
PctI GAATGC 1 cut(s) 958
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 2 cut(s) 234, 687
PflFI GACNNNGTC 1 cut(s) 170
PkrI GCNGC 9 cut(s) 191, 375, 378, 400, 475, 511, 514, 749, 1026
PleI GAGTC 1 cut(s) 1274
PpsI GAGTC 1 cut(s) 1274
PpuMI RGGWCCY 1 cut(s) 1170
PscI ACATGT 1 cut(s) 553
PshAI GACNNNNGTC 1 cut(s) 324
PshBI ATTAAT 1 cut(s) 1494
Psp124BI GAGCTC 1 cut(s) 272
Psp1406I AACGTT 1 cut(s) 1517
Psp5II RGGWCCY 1 cut(s) 1170
PspN4I GGNNCC 5 cut(s) 360, 818, 968, 1172, 1444
PspPI GGNCC 3 cut(s) 1139, 1170, 1313
PspPPI RGGWCCY 1 cut(s) 1170
PsuI RGATCY 2 cut(s) 358, 1015
PsyI GACNNNGTC 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 1024
RsaI GTAC 3 cut(s) 388, 1035, 1077
RsaNI GTAC 3 cut(s) 387, 1034, 1076
RseI CAYNNNNRTG 3 cut(s) 224, 245, 585
SacI GAGCTC 1 cut(s) 272
SaqAI TTAA 5 cut(s) 80, 759, 864, 1113, 1494
SatI GCNGC 9 cut(s) 190, 374, 377, 399, 474, 510, 513, 748, 1025
Sau96I GGNCC 3 cut(s) 1139, 1170, 1313
SchI GAGTC 1 cut(s) 1274
ScrFI CCNGG 1 cut(s) 971
SduI GDGCHC 1 cut(s) 272
SfaNI GCATC 6 cut(s) 35, 496, 604, 687, 1381, 1413
SfuI TTCGAA 1 cut(s) 1250
SgrAI CRCCGGYG 1 cut(s) 146
SinI GGWCC 1 cut(s) 1170
SmiMI CAYNNNNRTG 3 cut(s) 224, 245, 585
SmlI CTYRAG 4 cut(s) 79, 212, 559, 583
SmoI CTYRAG 4 cut(s) 79, 212, 559, 583
SpeI ACTAGT 1 cut(s) 796
Sse9I AATT 8 cut(s) 543, 634, 727, 1224, 1246, 1383, 1427, 1495
SseBI AGGCCT 1 cut(s) 123
SsiI CCGC 2 cut(s) 103, 473
SspMI CTAG 8 cut(s) 137, 477, 797, 941, 963, 1011, 1163, 1301
SstI GAGCTC 1 cut(s) 272
StuI AGGCCT 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 969
StyI CCWWGG 1 cut(s) 1446
TaaI ACNGT 1 cut(s) 1089
TaiI ACGT 2 cut(s) 75, 1520
TaqI TCGA 2 cut(s) 690, 1250
TasI AATT 8 cut(s) 543, 634, 727, 1224, 1246, 1383, 1427, 1495
TatI WGTACW 1 cut(s) 1033
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 2 cut(s) 234, 687
Tru1I TTAA 5 cut(s) 80, 759, 864, 1113, 1494
Tru9I TTAA 5 cut(s) 80, 759, 864, 1113, 1494
TscAI CASTG 1 cut(s) 1477
TseI GCWGC 8 cut(s) 189, 373, 376, 398, 509, 512, 747, 1024
TspDTI ATGAA 7 cut(s) 429, 523, 647, 722, 906, 907, 1467
TspGWI ACGGA 1 cut(s) 1213
TspRI CASTG 1 cut(s) 1477
Tth111I GACNNNGTC 1 cut(s) 170
Vha464I CTTAAG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 1170
VspI ATTAAT 1 cut(s) 1494
XapI RAATTY 3 cut(s) 634, 727, 1246
XbaI TCTAGA 1 cut(s) 1162
XceI RCATGY 2 cut(s) 26, 557
XmiI GTMKAC 1 cut(s) 849
XspI CTAG 8 cut(s) 137, 477, 797, 941, 963, 1011, 1163, 1301
Zsp2I ATGCAT 2 cut(s) 28, 1276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.