Rmu_sc0035653.1_g000001

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035653.1
OG0018068
Physical Location & Seq
Reverse (-)
2 .. 443
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035653.1_g000001.1.cds

Sequence Viewer

Length: 255 bp
atgcaggttatcgagacacactttcagcagaaccttcagatgattaaagacctggaggagcctatcagaaggtcatatgttcaggctcgtgataaagaaaggtcccttattgctgaaatagaagcaatacggagaaagaacgatgctcaggcgcaaattatagcagagctgcagcaaaattcgaattccaatttccccttgtatgcattagactcggcaacagatgttctactggatggaagagggcctgaaaat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

85

Amino Acids

9.8

Weight (kDa)

4.86

Isoelectric Point (pI)

66.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g49510
rosa_laevigata RLG00000021862
rosa_multiflora Rmu_sc0000648.1_g000014 Rmu_sc0035653.1_g000001
rosa_roxburghii Rroxscaffold_2G00082140 Rroxscaffold_2G00082170
rosa_rugosa Rorug02G0539900 Rorug02G0539900
rosa_samantha Rh2AG611200 Rh2BG624800
rosa_wichuraiana Rw2G050720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 178, 184
AcuI CTGAAG 1 cut(s) 20
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 8
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 2 cut(s) 169, 172
ApoI RAATTY 2 cut(s) 178, 184
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 102, 245
AsuII TTCGAA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 102
BauI CACGAG 1 cut(s) 87
BbvI GCAGC 2 cut(s) 156, 184
BccI CCATC 1 cut(s) 230
BcgI CGANNNNNNTGC 2 cut(s) 195, 229
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 170
BisI GCNGC 2 cut(s) 170, 173
BlsI GCNGC 2 cut(s) 171, 174
Bme1390I CCNGG 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 2 cut(s) 102, 245
BmiI GGNNCC 2 cut(s) 60, 104
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 74
Bpu10I CCTNAGC 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 237
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 156, 184
BshFI GGCC 1 cut(s) 247
BslFI GGGAC 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 8
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 1 cut(s) 247
Bsp119I TTCGAA 1 cut(s) 182
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 60, 104
BspMAI CTGCAG 1 cut(s) 174
BspT104I TTCGAA 1 cut(s) 182
BsrI ACTGG 1 cut(s) 237
BssSI CACGAG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 235
BstBI TTCGAA 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 241
BstHHI GCGC 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 8
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 156, 184
BsuRI GGCC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 241
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 102, 245
CviJI RGCY 4 cut(s) 61, 86, 169, 247
CviKI_1 RGCY 4 cut(s) 61, 86, 169, 247
DdeI CTNAG 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 20
EcoO109I RGGNCCY 2 cut(s) 102, 245
EcoRI GAATTC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 51
EcoT22I ATGCAT 1 cut(s) 208
FaiI YATR 4 cut(s) 76, 78, 161, 204
FaqI GGGAC 1 cut(s) 88
FauNDI CATATG 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 170, 173
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 2 cut(s) 170, 173
GlaI GCGC 1 cut(s) 153
GluI GCNGC 2 cut(s) 170, 173
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 1 cut(s) 247
HhaI GCGC 1 cut(s) 154
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 1 cut(s) 212
Hpy188I TCNGA 2 cut(s) 39, 68
Hpy188III TCNNGA 2 cut(s) 13, 89
HpyAV CCTTC 2 cut(s) 44, 63
HpyCH4V TGCA 3 cut(s) 4, 172, 206
HpyF3I CTNAG 1 cut(s) 147
HspAI GCGC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 5 cut(s) 38, 65, 68, 134, 218
Lsp1109I GCAGC 2 cut(s) 156, 184
LweI GCATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 252
MluCI AATT 4 cut(s) 156, 178, 184, 190
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 2 cut(s) 49, 236
Mph1103I ATGCAT 1 cut(s) 208
MseI TTAA 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
NdeI CATATG 1 cut(s) 76
NlaIV GGNNCC 2 cut(s) 60, 104
NmeAIII GCCGAG 1 cut(s) 194
NsiI ATGCAT 1 cut(s) 208
NspV TTCGAA 1 cut(s) 182
PkrI GCNGC 2 cut(s) 171, 174
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PpuMI RGGWCCY 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 60, 104
PspPI GGNCC 2 cut(s) 102, 245
PspPPI RGGWCCY 1 cut(s) 102
PstI CTGCAG 1 cut(s) 174
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 170, 173
Sau96I GGNCC 2 cut(s) 102, 245
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 53
SetI ASST 6 cut(s) 9, 36, 54, 74, 104, 171
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 170
SfuI TTCGAA 1 cut(s) 182
SinI GGWCC 1 cut(s) 102
Sse9I AATT 4 cut(s) 156, 178, 184, 190
StyD4I CCNGG 1 cut(s) 51
TaqI TCGA 2 cut(s) 12, 182
TasI AATT 4 cut(s) 156, 178, 184, 190
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseI GCWGC 2 cut(s) 169, 172
TspGWI ACGGA 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 102
XapI RAATTY 2 cut(s) 178, 184
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.