Rw2G050720

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
78342000 .. 78348246
6247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G050720.1

Sequence Viewer

Length: 1437 bp
ATGGCCGCCTATACAAGAATACAGGCATCGTCGTTTTCCTTCTATTCGTCAGCAACAAGGCGCAGGCACGACGTATTCTTGAGCTTTCGAGGCGAAGACACCCGCCACAACATAACCGAAAACCTCCACAAGGCCTTAGTCGACGCCGGCGTTCCTACGTTCAAAGACGATGTTAACCTTCAGAAGGGCAACGAGATTGCGTCCGACCTGCTCAAGGCCATACAGACATCGAGAATCGCCATCATAGTCTGGTGTCTGGATGAGTTGGTCAAGATTGTAGAGTGCAACAGGGAAGCGGGTCAGGTCATTTTGCCCATTTTCTGCGATGTGGATCCCTGTGATGTGCAGCAGCAGATGGGCACTTTTTCAGAAGCACTTGCTGTGCATGAAAGAAGTGGCAGGACCCAGGACAAGTTGGAGGCTTGGAAAGTGTCGTTGACCGAAGCGGCTAGTCAGCCTTATGGCTTTGATATGCGGGATGCTGCTACTTGGCTTCAATCGAAGTTCATAAAAGAAATTGTAAAGCATGTTCTGAGTAGATATCAAGATGCGCACTTGAGTGTTTCCATCTTCCCACCAAGATTAGATGCTGGTAAAGAATACATGAATTCCTTGTTAAGTGTAATATCAGATGACATTCGCATCATAGGCATCTGTGGAATGGAGAAAACTGCCTTGGCAAAAGATGCATATGACCAGAATTTTTATAGGTTTGAAAGCAGCAGTTTCATTAAAGATGTGAACAAGATGGCAGAACAACCCAATGGATTAGTTGCCATGCAAAAAGACAATGTAGAAATAAATGATGTTAAGGAAGGAACTGAGTTGATTAAAGATGTAGCAAGAAGAAAAAGAGTGCTCATCTTTCTTGATAATGTGAATAAACTAGACCAGTTAAATGCACTCGCTAGGAGACGGGAGTGGTTCGGCTCAGGAAGCAGAATAGTGATAACTACTAGAGATCCACAACTGCTAAGTGTACTTGACGTCGATAATGTATATGGGACGCAAGGCATAGAGGTTATCGAGACACAGTTTCAGCAGAACCTTCAGATGATTAAAGACCTGGAGGAGCCTATCAGAAGGTCATATGTTCAGGCTCGTGATAAAGAAAGGTCCCTTATTGCTGAAATAGAAGCAATACGGAGAAAGAACAATGCTCAGGCGCAAATTATAGCAGAGCTGCAGCAAAATTCCAATTCCAATTTCCCCTTGTATGCATTAGACTCGGCAACAGATGTTCTACTGGATGGAAGAGGGCCTGAAAATTTTGATGGATATGATGATTACAAAACCCTGCTCAGTTTTGTTCCTGAGAATGAGATGATAATTGGGGATGCTACTGTCAATCATGAGTTGAAGGCAACAATGCAATTTCTTAATGTTAGATCCAGGGATTTCAATGATCCAGTGAGCAGTGAATCGTCCAGGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

478

Amino Acids

54.3

Weight (kDa)

5.28

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 23 - 182 4.8e-36 TIR domain
TIR_2 PF13676 25 - 109 6.5e-06 TIR domain
NB-ARC PF00931 213 - 324 9.4e-06 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018068)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 990
Acc16I TGCGCA 1 cut(s) 552
Acc36I ACCTGC 1 cut(s) 216
AccI GTMKAC 1 cut(s) 141
AciI CCGC 5 cut(s) 6, 103, 296, 446, 475
AclWI GGATC 5 cut(s) 326, 339, 956, 1383, 1400
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 607, 700, 1192, 1267
AcuI CTGAAG 2 cut(s) 164, 1034
AcyI GRCGYC 2 cut(s) 144, 987
AfaI GTAC 1 cut(s) 981
AfiI CCNNNNNNNGG 3 cut(s) 130, 184, 214
AgsI TTSAA 5 cut(s) 163, 497, 716, 1360, 1402
AjnI CCWGG 4 cut(s) 405, 1065, 1391, 1427
AjuI GAANNNNNNNTTGG 4 cut(s) 659, 691, 1190, 1222
AleI CACNNNNGTG 1 cut(s) 558
AluBI AGCT 2 cut(s) 84, 1183
AluI AGCT 2 cut(s) 84, 1183
Alw21I GWGCWC 1 cut(s) 861
Alw26I GTCTC 2 cut(s) 907, 1022
AlwI GGATC 5 cut(s) 326, 339, 956, 1383, 1400
AoxI GGCC 4 cut(s) 3, 132, 216, 1259
ApeKI GCWGC 6 cut(s) 346, 349, 482, 720, 1183, 1186
ApoI RAATTY 4 cut(s) 607, 700, 1192, 1267
AspLEI GCGC 3 cut(s) 63, 553, 1168
AspS9I GGNCC 3 cut(s) 402, 1116, 1259
AvaII GGWCC 2 cut(s) 402, 1116
BaeGI GKGCMC 1 cut(s) 362
BamHI GGATCC 1 cut(s) 331
BauI CACGAG 1 cut(s) 1101
BbsI GAAGAC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 861
BbvI GCAGC 6 cut(s) 358, 361, 469, 732, 1170, 1198
BccI CCATC 6 cut(s) 248, 349, 575, 742, 1244, 1268
BcgI CGANNNNNNTGC 2 cut(s) 1209, 1243
BciT130I CCWGG 4 cut(s) 407, 1067, 1393, 1429
BcoDI GTCTC 2 cut(s) 907, 1022
BfaI CTAG 4 cut(s) 450, 887, 909, 957
BfmI CTRYAG 1 cut(s) 1184
BfuAI ACCTGC 1 cut(s) 216
BisI GCNGC 8 cut(s) 6, 347, 350, 447, 483, 721, 1184, 1187
BlsI GCNGC 8 cut(s) 7, 348, 351, 448, 484, 722, 1185, 1188
Bme1390I CCNGG 4 cut(s) 407, 1067, 1393, 1429
Bme18I GGWCC 2 cut(s) 402, 1116
BmgT120I GGNCC 3 cut(s) 402, 1116, 1259
BmiI GGNNCC 4 cut(s) 333, 404, 1074, 1118
BmrFI CCNGG 4 cut(s) 407, 1067, 1393, 1429
BmsI GCATC 8 cut(s) 35, 469, 538, 577, 651, 660, 676, 1327
BpiI GAAGAC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 1088
Bpu10I CCTNAGC 2 cut(s) 931, 1161
BpuEI CTTGAG 3 cut(s) 100, 197, 577
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 2 cut(s) 144, 987
BsaJI CCNNGG 3 cut(s) 405, 675, 1392
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 184, 214
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 3 cut(s) 892, 1251, 1409
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 4 cut(s) 407, 1067, 1393, 1429
BseDI CCNNGG 3 cut(s) 405, 675, 1392
BseGI GGATG 4 cut(s) 265, 484, 1255, 1342
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 3 cut(s) 130, 184, 214
BseMII CTCAG 6 cut(s) 524, 813, 945, 1175, 1305, 1315
BseNI ACTGG 3 cut(s) 892, 1251, 1409
BseRI GAGGAG 1 cut(s) 1085
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 6 cut(s) 358, 361, 469, 732, 1170, 1198
BsgI GTGCAG 1 cut(s) 365
BshFI GGCC 4 cut(s) 5, 134, 218, 1261
BsiHKAI GWGCWC 1 cut(s) 861
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 2 cut(s) 1018, 1102
BslI CCNNNNNNNGG 3 cut(s) 130, 184, 214
BsmAI GTCTC 2 cut(s) 907, 1022
BsmBI CGTCTC 1 cut(s) 907
BsmFI GGGAC 2 cut(s) 1018, 1102
BsnI GGCC 4 cut(s) 5, 134, 218, 1261
Bsp1286I GDGCHC 2 cut(s) 362, 861
Bsp143I GATC 4 cut(s) 331, 961, 1388, 1405
BspACI CCGC 5 cut(s) 6, 103, 296, 446, 475
BspANI GGCC 4 cut(s) 5, 134, 218, 1261
BspCNI CTCAG 6 cut(s) 525, 814, 944, 1174, 1306, 1314
BspHI TCATGA 1 cut(s) 1351
BspLI GGNNCC 4 cut(s) 333, 404, 1074, 1118
BspMAI CTGCAG 1 cut(s) 1188
BspMI ACCTGC 1 cut(s) 216
BspPI GGATC 5 cut(s) 326, 339, 956, 1383, 1400
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 3 cut(s) 892, 1251, 1409
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 3 cut(s) 405, 675, 1392
BssMI GATC 4 cut(s) 331, 961, 1388, 1405
BssNI GRCGYC 2 cut(s) 144, 987
BssSI CACGAG 1 cut(s) 1101
BssT1I CCWWGG 1 cut(s) 675
Bst2BI CACGAG 1 cut(s) 1101
Bst2UI CCWGG 4 cut(s) 407, 1067, 1393, 1429
Bst4CI ACNGT 2 cut(s) 1035, 1345
Bst6I CTCTTC 1 cut(s) 1249
BstACI GRCGYC 2 cut(s) 144, 987
BstAPI GCANNNNNTGC 1 cut(s) 686
BstC8I GCNNGC 2 cut(s) 65, 148
BstDEI CTNAG 8 cut(s) 136, 533, 822, 931, 974, 1161, 1301, 1314
BstENI CCTNNNNNAGG 3 cut(s) 128, 182, 212
BstF5I GGATG 4 cut(s) 265, 484, 1255, 1342
BstHHI GCGC 3 cut(s) 63, 553, 1168
BstKTI GATC 4 cut(s) 334, 964, 1391, 1408
BstMAI GTCTC 2 cut(s) 907, 1022
BstMBI GATC 4 cut(s) 331, 961, 1388, 1405
BstMWI GCNNNNNNNGC 4 cut(s) 90, 648, 686, 936
BstNI CCWGG 4 cut(s) 407, 1067, 1393, 1429
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 4 cut(s) 405, 1065, 1391, 1427
BstSFI CTRYAG 1 cut(s) 1184
BstSLI GKGCMC 1 cut(s) 362
BstV1I GCAGC 6 cut(s) 358, 361, 469, 732, 1170, 1198
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 3 cut(s) 331, 961, 1388
BstYI RGATCY 3 cut(s) 331, 961, 1388
BsuRI GGCC 4 cut(s) 5, 134, 218, 1261
BtgZI GCGATG 1 cut(s) 339
BtsCI GGATG 4 cut(s) 265, 484, 1255, 1342
BtsI GCAGTG 1 cut(s) 1423
BtsIMutI CAGTG 2 cut(s) 1416, 1423
BveI ACCTGC 1 cut(s) 216
Cac8I GCNNGC 2 cut(s) 65, 148
CciI TCATGA 1 cut(s) 1351
CfoI GCGC 3 cut(s) 63, 553, 1168
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 3 cut(s) 402, 1116, 1259
CseI GACGC 3 cut(s) 152, 189, 1015
Csp6I GTAC 1 cut(s) 980
CviAII CATG 5 cut(s) 386, 527, 604, 778, 1352
CviQI GTAC 1 cut(s) 980
DdeI CTNAG 8 cut(s) 136, 533, 822, 931, 974, 1161, 1301, 1314
DpnI GATC 4 cut(s) 333, 963, 1390, 1407
DpnII GATC 4 cut(s) 331, 961, 1388, 1405
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 1249
EarI CTCTTC 1 cut(s) 1249
Eco130I CCWWGG 1 cut(s) 675
Eco147I AGGCCT 1 cut(s) 134
Eco32I GATATC 1 cut(s) 542
Eco47I GGWCC 2 cut(s) 402, 1116
Eco57I CTGAAG 2 cut(s) 164, 1034
EcoNI CCTNNNNNAGG 3 cut(s) 128, 182, 212
EcoO109I RGGNCCY 3 cut(s) 402, 1116, 1259
EcoRI GAATTC 1 cut(s) 607
EcoRII CCWGG 4 cut(s) 405, 1065, 1391, 1427
EcoRV GATATC 1 cut(s) 542
EcoT14I CCWWGG 1 cut(s) 675
EcoT22I ATGCAT 2 cut(s) 691, 1222
ErhI CCWWGG 1 cut(s) 675
Esp3I CGTCTC 1 cut(s) 907
FaeI CATG 5 cut(s) 389, 530, 607, 781, 1355
FaqI GGGAC 2 cut(s) 1018, 1102
FatI CATG 5 cut(s) 385, 526, 603, 777, 1351
FauI CCCGC 3 cut(s) 110, 289, 468
FauNDI CATATG 2 cut(s) 691, 1090
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 8 cut(s) 6, 347, 350, 447, 483, 721, 1184, 1187
FokI GGATG 4 cut(s) 272, 491, 1262, 1349
Fsp4HI GCNGC 8 cut(s) 6, 347, 350, 447, 483, 721, 1184, 1187
FspAI RTGCGCAY 1 cut(s) 552
FspBI CTAG 4 cut(s) 450, 887, 909, 957
FspI TGCGCA 1 cut(s) 552
GlaI GCGC 3 cut(s) 62, 552, 1167
GluI GCNGC 8 cut(s) 6, 347, 350, 447, 483, 721, 1184, 1187
GsuI CTGGAG 1 cut(s) 1088
HaeIII GGCC 4 cut(s) 5, 134, 218, 1261
HapII CCGG 1 cut(s) 147
HgaI GACGC 3 cut(s) 152, 189, 1015
HhaI GCGC 3 cut(s) 63, 553, 1168
Hin1I GRCGYC 2 cut(s) 144, 987
Hin1II CATG 5 cut(s) 389, 530, 607, 781, 1355
Hin6I GCGC 3 cut(s) 61, 551, 1166
HinP1I GCGC 3 cut(s) 61, 551, 1166
HincII GTYRAC 3 cut(s) 142, 175, 438
HindII GTYRAC 3 cut(s) 142, 175, 438
HinfI GANTC 3 cut(s) 234, 1226, 1421
HpaI GTTAAC 1 cut(s) 175
HpaII CCGG 1 cut(s) 147
Hpy166II GTNNAC 5 cut(s) 142, 175, 438, 742, 980
Hpy188I TCNGA 7 cut(s) 183, 205, 370, 534, 631, 1053, 1082
Hpy8I GTNNAC 5 cut(s) 142, 175, 438, 742, 980
Hpy99I CGWCG 4 cut(s) 34, 74, 146, 992
HpyAV CCTTC 7 cut(s) 49, 178, 188, 809, 1058, 1077, 1354
HpyCH4III ACNGT 2 cut(s) 1035, 1345
HpyCH4IV ACGT 3 cut(s) 72, 158, 987
HpyCH4V TGCA 9 cut(s) 285, 346, 385, 689, 781, 902, 1186, 1220, 1372
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 648, 686, 936
HpyF3I CTNAG 8 cut(s) 136, 533, 822, 931, 974, 1161, 1301, 1314
HpySE526I ACGT 3 cut(s) 72, 158, 987
Hsp92I GRCGYC 2 cut(s) 144, 987
Hsp92II CATG 5 cut(s) 389, 530, 607, 781, 1355
HspAI GCGC 3 cut(s) 61, 551, 1166
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
KspAI GTTAAC 1 cut(s) 175
Kzo9I GATC 4 cut(s) 331, 961, 1388, 1405
LmnI GCTCC 1 cut(s) 1072
Lsp1109I GCAGC 6 cut(s) 358, 361, 469, 732, 1170, 1198
LweI GCATC 8 cut(s) 35, 469, 538, 577, 651, 660, 676, 1327
MaeI CTAG 4 cut(s) 450, 887, 909, 957
MaeII ACGT 3 cut(s) 72, 158, 987
MalI GATC 4 cut(s) 333, 963, 1390, 1407
MboI GATC 4 cut(s) 331, 961, 1388, 1405
MboII GAAGA 4 cut(s) 107, 562, 858, 1266
MflI RGATCY 3 cut(s) 331, 961, 1388
MhlI GDGCHC 2 cut(s) 362, 861
MlyI GAGTC 1 cut(s) 1220
MmeI TCCRAC 2 cut(s) 228, 396
MnlI CCTC 6 cut(s) 83, 134, 412, 1012, 1063, 1250
Mph1103I ATGCAT 2 cut(s) 691, 1222
MreI CGCCGGCG 1 cut(s) 146
MroNI GCCGGC 1 cut(s) 146
MseI TTAA 9 cut(s) 174, 617, 732, 810, 831, 896, 1059, 1380, 1435
MslI CAYNNNNRTG 1 cut(s) 558
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 4 cut(s) 407, 1067, 1393, 1429
MvaI CCWGG 4 cut(s) 407, 1067, 1393, 1429
MwoI GCNNNNNNNGC 4 cut(s) 90, 648, 686, 936
NaeI GCCGGC 1 cut(s) 148
NdeI CATATG 2 cut(s) 691, 1090
NdeII GATC 4 cut(s) 331, 961, 1388, 1405
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 5 cut(s) 389, 530, 607, 781, 1355
NlaIV GGNNCC 4 cut(s) 333, 404, 1074, 1118
NmeAIII GCCGAG 1 cut(s) 1208
NsbI TGCGCA 1 cut(s) 552
NsiI ATGCAT 2 cut(s) 691, 1222
NspI RCATGY 1 cut(s) 530
OliI CACNNNNGTG 1 cut(s) 558
PagI TCATGA 1 cut(s) 1351
PceI AGGCCT 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 2 cut(s) 234, 1421
PkrI GCNGC 8 cut(s) 7, 348, 351, 448, 484, 722, 1185, 1188
PleI GAGTC 1 cut(s) 1220
PpsI GAGTC 1 cut(s) 1220
PpuMI RGGWCCY 2 cut(s) 402, 1116
Psp5II RGGWCCY 2 cut(s) 402, 1116
Psp6I CCWGG 4 cut(s) 405, 1065, 1391, 1427
PspGI CCWGG 4 cut(s) 405, 1065, 1391, 1427
PspN4I GGNNCC 4 cut(s) 333, 404, 1074, 1118
PspPI GGNCC 3 cut(s) 402, 1116, 1259
PspPPI RGGWCCY 2 cut(s) 402, 1116
PsrI GAACNNNNNNTAC 2 cut(s) 513, 545
PstI CTGCAG 1 cut(s) 1188
PsuI RGATCY 3 cut(s) 331, 961, 1388
RsaI GTAC 1 cut(s) 981
RsaNI GTAC 1 cut(s) 980
RseI CAYNNNNRTG 1 cut(s) 558
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 9 cut(s) 174, 617, 732, 810, 831, 896, 1059, 1380, 1435
SatI GCNGC 8 cut(s) 6, 347, 350, 447, 483, 721, 1184, 1187
Sau3AI GATC 4 cut(s) 331, 961, 1388, 1405
Sau96I GGNCC 3 cut(s) 402, 1116, 1259
SchI GAGTC 1 cut(s) 1220
ScrFI CCNGG 4 cut(s) 407, 1067, 1393, 1429
SduI GDGCHC 2 cut(s) 362, 861
SfaNI GCATC 8 cut(s) 35, 469, 538, 577, 651, 660, 676, 1327
SfcI CTRYAG 1 cut(s) 1184
SgrAI CRCCGGYG 1 cut(s) 146
SinI GGWCC 2 cut(s) 402, 1116
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 3 cut(s) 79, 212, 556
SmoI CTYRAG 3 cut(s) 79, 212, 556
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 5 cut(s) 6, 103, 296, 446, 475
SspMI CTAG 4 cut(s) 450, 887, 909, 957
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 4 cut(s) 405, 1065, 1391, 1427
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 2 cut(s) 1035, 1345
TaiI ACGT 3 cut(s) 75, 161, 990
TaqI TCGA 6 cut(s) 88, 141, 230, 500, 990, 1026
TaqII GACCGA 1 cut(s) 455
TatI WGTACW 1 cut(s) 979
TauI GCSGC 2 cut(s) 8, 449
TfiI GAWTC 2 cut(s) 234, 1421
Tru1I TTAA 9 cut(s) 174, 617, 732, 810, 831, 896, 1059, 1380, 1435
Tru9I TTAA 9 cut(s) 174, 617, 732, 810, 831, 896, 1059, 1380, 1435
TscAI CASTG 2 cut(s) 1416, 1423
TseI GCWGC 6 cut(s) 346, 349, 482, 720, 1183, 1186
TspDTI ATGAA 4 cut(s) 402, 496, 620, 718
TspGWI ACGGA 1 cut(s) 1159
TspRI CASTG 2 cut(s) 1416, 1423
VpaK11BI GGWCC 2 cut(s) 402, 1116
XagI CCTNNNNNAGG 3 cut(s) 128, 182, 212
XapI RAATTY 4 cut(s) 607, 700, 1192, 1267
XceI RCATGY 1 cut(s) 530
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 4 cut(s) 450, 887, 909, 957
ZraI GACGTC 1 cut(s) 988
Zsp2I ATGCAT 2 cut(s) 691, 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.