Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015222

Physical Location & Seq

Genomic Coordinates Forward (+)

37332139 .. 37334642

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACTCTCCAGCTCCAAGCTCCGTCGTTCGCCGCCACCATTTCGTCTCTTGCTTCCCCTCTCAACCGCTCCACCCGCCGCTTCGTAATTCGAGCTCAAGTTGAGCCAACAGAGAAGTCTGTTGAGATTATGAGGAAGTTTTCGGAGCAGTATGCTCGGAAGTCCGGGACATACTTCTGTGTTGATAAGGGAGTCACTTCTGTTGTTATCAAGGGATTGGCAGACCACAAAGATTCATTGGGTGCTCCACTTTGCCCTTGTCGGCATTACGATGACAAACCGGCAGAGGCTGGCCAAGGCTTTTGGAACTGCCCCTGTGTTCCCATGAGGGAAAGGAAGGAGTGCCACTGCATGCTCTTTCTCACCCCTGAAAATGATTTTGCTGGAAAAGAACAGACAATCACCTTAGAAGAGATCAGAGAATCCACGGCAAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016491 GO:0016730 GO:0022900 GO:0030385 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051536 GO:0051539 GO:0051540 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FeThRed_B

Protein Analysis

147

Amino Acids

16.39

Weight (kDa)

7.57

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FeThRed_B	PF02943	41 - 140	1.3e-42	Ferredoxin thioredoxin reductase catalytic beta chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04700 AT2G04700
fragaria_vesca	FvH4_6g50060
malus_domestica	MD09G1039900.v1.1 MD17G1040500.v1.1
prunus_persica	Prupe.3G278500_v2.0.a1
pyrus_communis	pycom111g03120 pycom17g03630
rosa_chinensis	RchiOBHm_Chr2g0170331
rosa_laevigata	RLG00000021946
rosa_multiflora	Rmu_sc0012445.1_g000004
rosa_roxburghii	Rroxscaffold_2G00081430
rosa_rugosa	Rorug02G0548200
rosa_samantha	Rh2AG619500 Rh2BG630400
rosa_wichuraiana	Rw2G051320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	69
AciI	CCGC	4 cut(s)	33, 67, 76, 79
AcoI	YGGCCR	1 cut(s)	292
AflIII	ACRYGT	1 cut(s)	435
AluBI	AGCT	3 cut(s)	13, 20, 95
AluI	AGCT	3 cut(s)	13, 20, 95
Alw21I	GWGCWC	2 cut(s)	97, 247
Alw26I	GTCTC	1 cut(s)	51
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	355, 394
BalI	TGGCCA	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	2 cut(s)	97, 247
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	33, 79
BlsI	GCNGC	2 cut(s)	34, 80
Bme1390I	CCNGG	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	295, 426
Bse118I	RCCGGY	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	295, 426
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	97, 247
BsiSI	CCGG	2 cut(s)	165, 281
BslFI	GGGAC	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	51
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	97, 247
Bsp143I	GATC	1 cut(s)	414
BspACI	CCGC	4 cut(s)	33, 67, 76, 79
BspANI	GGCC	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	295, 426
BssMI	GATC	1 cut(s)	414
BssT1I	CCWWGG	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	292, 353
BstDEI	CTNAG	1 cut(s)	406
BstDSI	CCRYGG	1 cut(s)	426
BstKTI	GATC	1 cut(s)	417
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	355, 439
BstSCI	CCNGG	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	426
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	346
Cac8I	GCNNGC	2 cut(s)	292, 353
CaiI	CAGNNNCTG	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	280
CviAII	CATG	3 cut(s)	325, 352, 436
CviJI	RGCY	7 cut(s)	13, 20, 95, 106, 290, 294, 300
CviKI_1	RGCY	7 cut(s)	13, 20, 95, 106, 290, 294, 300
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Ecl136II	GAGCTC	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	3 cut(s)	328, 355, 439
FaiI	YATR	6 cut(s)	131, 153, 172, 326, 353, 437
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	3 cut(s)	324, 351, 435
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	33, 79
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	2 cut(s)	33, 79
GluI	GCNGC	2 cut(s)	33, 79
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	2 cut(s)	165, 281
Hin1II	CATG	3 cut(s)	328, 355, 439
HinfI	GANTC	4 cut(s)	4, 192, 233, 422
HpaII	CCGG	2 cut(s)	165, 281
HphI	GGTGA	2 cut(s)	355, 394
Hpy188I	TCNGA	3 cut(s)	145, 159, 419
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	331
HpyCH4V	TGCA	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	1 cut(s)	406
Hsp92II	CATG	3 cut(s)	328, 355, 439
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	5 cut(s)	18, 25, 74, 145, 250
LpnPI	CCDG	7 cut(s)	23, 178, 276, 294, 328, 369, 381
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	416
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	1 cut(s)	414
MboII	GAAGA	1 cut(s)	422
MhlI	GDGCHC	2 cut(s)	97, 247
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	1 cut(s)	87
MluNI	TGGCCA	1 cut(s)	294
MlyI	GAGTC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	69, 126, 280, 321
Mox20I	TGGCCA	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	294
MspI	CCGG	2 cut(s)	165, 281
MspR9I	CCNGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	414
NlaIII	CATG	3 cut(s)	328, 355, 439
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	2 cut(s)	355, 439
PaeI	GCATGC	1 cut(s)	355
PciI	ACATGT	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	233, 422
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	34, 80
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PscI	ACATGT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	97
SatI	GCNGC	2 cut(s)	33, 79
Sau3AI	GATC	1 cut(s)	414
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	2 cut(s)	97, 247
SetI	ASST	4 cut(s)	15, 22, 97, 407
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
SphI	GCATGC	1 cut(s)	355
Sse9I	AATT	1 cut(s)	87
SsiI	CCGC	4 cut(s)	33, 67, 76, 79
SstI	GAGCTC	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	295
TaqI	TCGA	1 cut(s)	91
TasI	AATT	1 cut(s)	87
TauI	GCSGC	2 cut(s)	35, 81
TfiI	GAWTC	2 cut(s)	233, 422
TscAI	CASTG	1 cut(s)	353
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	12
TspRI	CASTG	1 cut(s)	353
XceI	RCATGY	2 cut(s)	355, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.