Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0015222

Physical Location & Seq

Genomic Coordinates Reverse (-)

2424476 .. 2426508

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g03630.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACTCTGCAACTCCAAGCTCCGTCGTTCGGCGCCAGCATTGCGTCCTTCGTTTCTCCTCTCAACCGCTCCACGCGCCGCCCTGTAATCATAGCTAATGCGGAGCCGTCAGATAAATCTGTTGAAATCATGAGGAAGTTCTCTGAGCAGTATGCTCGCAAGTCCGGAACATATTTCTGTGTCGATAAGGGAGTTACTTCTGTTGTTATCAAGGGATTGGCAGACCATAAAGATTCATTGGGAGCTCCGCTCTGCCCTTGTCGGCATTATGATGATAAACCTGCCGAGGCAGGCCAAGGCTTTTGGAACTGCCCATGTGTTCCTATGAGAGAGAGGAAGGAATGCCACTGCATGCTCTTTCTCACTCCGGACAATGATTTTGCCGGACCGGAACAGGCAATCTCCCTGGAAGAGATCAAAGAATCAACAGCAAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016491 GO:0016730 GO:0022900 GO:0030385 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051536 GO:0051539 GO:0051540 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FeThRed_B

Protein Analysis

147

Amino Acids

16.13

Weight (kDa)

6.29

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04700 AT2G04700
fragaria_vesca	FvH4_6g50060
malus_domestica	MD09G1039900.v1.1 MD17G1040500.v1.1
prunus_persica	Prupe.3G278500_v2.0.a1
pyrus_communis	pycom111g03120 pycom17g03630
rosa_chinensis	RchiOBHm_Chr2g0170331
rosa_laevigata	RLG00000021946
rosa_multiflora	Rmu_sc0012445.1_g000004
rosa_roxburghii	Rroxscaffold_2G00081430
rosa_rugosa	Rorug02G0548200
rosa_samantha	Rh2AG619500 Rh2BG630400
rosa_wichuraiana	Rw2G051320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	32
AccBSI	CCGCTC	2 cut(s)	69, 250
AccII	CGCG	1 cut(s)	76
AccIII	TCCGGA	2 cut(s)	164, 367
AciI	CCGC	4 cut(s)	67, 79, 101, 248
AcyI	GRCGYC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	3 cut(s)	20, 95, 245
AluI	AGCT	3 cut(s)	20, 95, 245
Alw21I	GWGCWC	1 cut(s)	247
Aor13HI	TCCGGA	2 cut(s)	164, 367
AoxI	GGCC	1 cut(s)	292
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AspLEI	GCGC	2 cut(s)	35, 78
AspS9I	GGNCC	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	1 cut(s)	407
BfoI	RGCGCY	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	2 cut(s)	34, 105
BmrFI	CCNGG	1 cut(s)	407
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	285, 295, 405
BsaWI	WCCGGW	3 cut(s)	164, 367, 388
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	39
BseAI	TCCGGA	2 cut(s)	164, 367
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	3 cut(s)	285, 295, 405
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	4 cut(s)	165, 368, 384, 389
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp13I	TCCGGA	2 cut(s)	164, 367
Bsp143I	GATC	1 cut(s)	414
BspACI	CCGC	4 cut(s)	67, 79, 101, 248
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	136
BspEI	TCCGGA	2 cut(s)	164, 367
BspFNI	CGCG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	34, 105
BspMI	ACCTGC	1 cut(s)	289
BspT107I	GGYRCC	1 cut(s)	32
BsrBI	CCGCTC	2 cut(s)	69, 250
BsrDI	GCAATG	1 cut(s)	39
BssECI	CCNNGG	3 cut(s)	285, 295, 405
BssMI	GATC	1 cut(s)	414
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	407
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	4 cut(s)	37, 157, 292, 353
BstDEI	CTNAG	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	35, 78
BstKTI	GATC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 75
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	2 cut(s)	355, 439
BstSCI	CCNGG	1 cut(s)	405
BstUI	CGCG	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	346
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	4 cut(s)	37, 157, 292, 353
CciI	TCATGA	1 cut(s)	129
CfoI	GCGC	2 cut(s)	35, 78
Cfr13I	GGNCC	1 cut(s)	386
CpoI	CGGWCCG	1 cut(s)	386
CseI	GACGC	1 cut(s)	33
CspI	CGGWCCG	1 cut(s)	386
CviAII	CATG	4 cut(s)	130, 315, 352, 436
CviJI	RGCY	6 cut(s)	20, 95, 106, 245, 294, 300
CviKI_1	RGCY	6 cut(s)	20, 95, 106, 245, 294, 300
DdeI	CTNAG	1 cut(s)	144
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Ecl136II	GAGCTC	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	386
Eco53kI	GAGCTC	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	247
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	4 cut(s)	133, 318, 355, 439
FatI	CATG	4 cut(s)	129, 314, 351, 435
Fnu4HI	GCNGC	1 cut(s)	79
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	79
GlaI	GCGC	2 cut(s)	34, 77
GluI	GCNGC	1 cut(s)	79
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	4 cut(s)	165, 368, 384, 389
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	2 cut(s)	35, 78
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	133, 318, 355, 439
Hin6I	GCGC	2 cut(s)	33, 76
HinP1I	GCGC	2 cut(s)	33, 76
HinfI	GANTC	3 cut(s)	4, 233, 422
HpaII	CCGG	4 cut(s)	165, 368, 384, 389
Hpy188I	TCNGA	2 cut(s)	112, 145
Hpy188III	TCNNGA	3 cut(s)	130, 165, 368
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	58, 331
HpyCH4V	TGCA	2 cut(s)	10, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 75
HpyF3I	CTNAG	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	133, 318, 355, 439
HspAI	GCGC	2 cut(s)	33, 76
KasI	GGCGCC	1 cut(s)	32
Kpn2I	TCCGGA	2 cut(s)	164, 367
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	5 cut(s)	25, 74, 103, 242, 250
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	416
MbiI	CCGCTC	2 cut(s)	69, 250
MboI	GATC	1 cut(s)	414
MboII	GAAGA	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	247
Mly113I	GGCGCC	1 cut(s)	33
MnlI	CCTC	4 cut(s)	69, 126, 280, 327
MroI	TCCGGA	2 cut(s)	164, 367
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	4 cut(s)	165, 368, 384, 389
MspR9I	CCNGG	1 cut(s)	407
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	2 cut(s)	41, 75
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	1 cut(s)	414
NlaIII	CATG	4 cut(s)	133, 318, 355, 439
NlaIV	GGNNCC	2 cut(s)	34, 105
NmeAIII	GCCGAG	1 cut(s)	310
NspI	RCATGY	2 cut(s)	355, 439
PaeI	GCATGC	1 cut(s)	355
PagI	TCATGA	1 cut(s)	129
PciI	ACATGT	1 cut(s)	435
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	233, 422
PkrI	GCNGC	1 cut(s)	80
PluTI	GGCGCC	1 cut(s)	36
PscI	ACATGT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	34, 105
PspPI	GGNCC	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	270
Rsr2I	CGGWCCG	1 cut(s)	386
RsrII	CGGWCCG	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	247
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	4 cut(s)	22, 97, 247, 283
SfoI	GGCGCC	1 cut(s)	34
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	270
SphI	GCATGC	1 cut(s)	355
SsiI	CCGC	4 cut(s)	67, 79, 101, 248
SspDI	GGCGCC	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	295
TaqI	TCGA	1 cut(s)	183
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	233, 422
TscAI	CASTG	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	12
TspRI	CASTG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	386
XceI	RCATGY	2 cut(s)	355, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.