Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0015222

Physical Location & Seq

Genomic Coordinates Reverse (-)

1890577 .. 1892441

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03120.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACTCTGCAACTCCAAGCTCCGTCGTTCGCCGCCAGCATTTCGTCCTTCGTCTCTCCTCTCAACCGCTCCACGCGCCGCCCTGTAATCCGAGCTAAAGCGGAGCCGTCAGATAAGTCTGTTGAAATCATGAGGAAGTTCTCCGAGCAGTATGCTCGCAAGTCCGGAACATATTTCTGCGTCGATAAGGGAGTTACTTCTGTTGTTATCAAGGGGTTGGCAGACCATAAAGATTCGTTGGGCGCACCACTCTGCCCTTGTCGGCATTATGATGATAAACCTGCCGAGGCAGGCCAAGGCTTTTGGAACTGCCCGTGTGTTCCCATGAGAGAGAGGAAGGAATGCCACTGCATGCTCTTTCTCACTCCTGACAATGATTTTGCCGGACCGGAACAGGCCATCTCCTTGGAAGAGATCAGAGAATCGACGGCAAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016491 GO:0016730 GO:0022900 GO:0030385 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051536 GO:0051539 GO:0051540 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FeThRed_B

Protein Analysis

147

Amino Acids

16.25

Weight (kDa)

7.57

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04700 AT2G04700
fragaria_vesca	FvH4_6g50060
malus_domestica	MD09G1039900.v1.1 MD17G1040500.v1.1
prunus_persica	Prupe.3G278500_v2.0.a1
pyrus_communis	pycom111g03120 pycom17g03630
rosa_chinensis	RchiOBHm_Chr2g0170331
rosa_laevigata	RLG00000021946
rosa_multiflora	Rmu_sc0012445.1_g000004
rosa_roxburghii	Rroxscaffold_2G00081430
rosa_rugosa	Rorug02G0548200
rosa_samantha	Rh2AG619500 Rh2BG630400
rosa_wichuraiana	Rw2G051320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccBSI	CCGCTC	1 cut(s)	69
AccII	CGCG	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	164
AciI	CCGC	4 cut(s)	33, 67, 79, 101
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	1 cut(s)	125
AluBI	AGCT	2 cut(s)	20, 95
AluI	AGCT	2 cut(s)	20, 95
Alw26I	GTCTC	1 cut(s)	58
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	2 cut(s)	292, 396
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AspLEI	GCGC	2 cut(s)	78, 245
AspS9I	GGNCC	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	386
BccI	CCATC	1 cut(s)	407
BceAI	ACGGC	1 cut(s)	91
BcgI	CGANNNNNNTGC	4 cut(s)	134, 137, 168, 171
BcoDI	GTCTC	1 cut(s)	58
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	2 cut(s)	33, 79
BlsI	GCNGC	2 cut(s)	34, 80
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	105
BsaJI	CCNNGG	3 cut(s)	285, 295, 405
BsaWI	WCCGGW	2 cut(s)	164, 388
BseAI	TCCGGA	1 cut(s)	164
BseDI	CCNNGG	3 cut(s)	285, 295, 405
BseRI	GAGGAG	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	294, 398
BsiSI	CCGG	3 cut(s)	165, 384, 389
BsmAI	GTCTC	1 cut(s)	58
BsmBI	CGTCTC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	294, 398
Bsp13I	TCCGGA	1 cut(s)	164
Bsp143I	GATC	1 cut(s)	414
BspACI	CCGC	4 cut(s)	33, 67, 79, 101
BspANI	GGCC	2 cut(s)	294, 398
BspEI	TCCGGA	1 cut(s)	164
BspFNI	CGCG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	69
BssECI	CCNNGG	3 cut(s)	285, 295, 405
BssMI	GATC	1 cut(s)	414
BssT1I	CCWWGG	2 cut(s)	295, 405
Bst6I	CTCTTC	1 cut(s)	405
BstC8I	GCNNGC	4 cut(s)	37, 157, 292, 353
BstFNI	CGCG	1 cut(s)	76
BstHHI	GCGC	2 cut(s)	78, 245
BstKTI	GATC	1 cut(s)	417
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	355, 439
BstUI	CGCG	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	294, 398
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	346
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	4 cut(s)	37, 157, 292, 353
CciI	TCATGA	1 cut(s)	129
CfoI	GCGC	2 cut(s)	78, 245
Cfr13I	GGNCC	1 cut(s)	386
CpoI	CGGWCCG	1 cut(s)	386
CseI	GACGC	1 cut(s)	169
CspI	CGGWCCG	1 cut(s)	386
CviAII	CATG	4 cut(s)	130, 325, 352, 436
CviJI	RGCY	6 cut(s)	20, 95, 106, 294, 300, 398
CviKI_1	RGCY	6 cut(s)	20, 95, 106, 294, 300, 398
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	295, 405
Eco47I	GGWCC	1 cut(s)	386
EcoT14I	CCWWGG	2 cut(s)	295, 405
ErhI	CCWWGG	2 cut(s)	295, 405
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	4 cut(s)	133, 328, 355, 439
FaiI	YATR	8 cut(s)	131, 153, 172, 228, 270, 326, 353, 437
FatI	CATG	4 cut(s)	129, 324, 351, 435
Fnu4HI	GCNGC	2 cut(s)	33, 79
Fsp4HI	GCNGC	2 cut(s)	33, 79
GlaI	GCGC	2 cut(s)	77, 244
GluI	GCNGC	2 cut(s)	33, 79
HaeIII	GGCC	2 cut(s)	294, 398
HapII	CCGG	3 cut(s)	165, 384, 389
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	78, 245
Hin1II	CATG	4 cut(s)	133, 328, 355, 439
Hin6I	GCGC	2 cut(s)	76, 243
HinP1I	GCGC	2 cut(s)	76, 243
HinfI	GANTC	3 cut(s)	4, 233, 422
HpaII	CCGG	3 cut(s)	165, 384, 389
Hpy188I	TCNGA	4 cut(s)	92, 112, 145, 419
Hpy188III	TCNNGA	3 cut(s)	130, 165, 368
Hpy99I	CGWCG	3 cut(s)	28, 185, 430
HpyAV	CCTTC	2 cut(s)	58, 331
HpyCH4V	TGCA	2 cut(s)	10, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
Hsp92II	CATG	4 cut(s)	133, 328, 355, 439
HspAI	GCGC	2 cut(s)	76, 243
Kpn2I	TCCGGA	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	3 cut(s)	25, 74, 103
LpnPI	CCDG	9 cut(s)	49, 96, 178, 276, 294, 380, 381, 397, 402
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	416
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	1 cut(s)	414
MboII	GAAGA	1 cut(s)	422
MnlI	CCTC	4 cut(s)	69, 126, 280, 327
MroI	TCCGGA	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	3 cut(s)	165, 384, 389
Mva1269I	GAATGC	1 cut(s)	347
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	1 cut(s)	414
NlaIII	CATG	4 cut(s)	133, 328, 355, 439
NlaIV	GGNNCC	1 cut(s)	105
NmeAIII	GCCGAG	1 cut(s)	310
NspI	RCATGY	2 cut(s)	355, 439
PaeI	GCATGC	1 cut(s)	355
PagI	TCATGA	1 cut(s)	129
PciI	ACATGT	1 cut(s)	435
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	233, 422
PkrI	GCNGC	2 cut(s)	34, 80
PscI	ACATGT	1 cut(s)	435
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	270
Rsr2I	CGGWCCG	1 cut(s)	386
RsrII	CGGWCCG	1 cut(s)	386
SatI	GCNGC	2 cut(s)	33, 79
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	1 cut(s)	386
SetI	ASST	3 cut(s)	22, 97, 283
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	270
SphI	GCATGC	1 cut(s)	355
SsiI	CCGC	4 cut(s)	33, 67, 79, 101
StyI	CCWWGG	2 cut(s)	295, 405
TaqI	TCGA	2 cut(s)	183, 425
TauI	GCSGC	2 cut(s)	35, 81
TfiI	GAWTC	2 cut(s)	233, 422
TscAI	CASTG	1 cut(s)	353
TspGWI	ACGGA	1 cut(s)	12
TspRI	CASTG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	386
XceI	RCATGY	2 cut(s)	355, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.