MD09G1039900.v1.1

Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0015222
Physical Location & Seq
Reverse (-)
2509799 .. 2512199
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1039900.v1.1.491

Sequence Viewer

Length: 441 bp
ATGACTCCGCAACTCCAAGCTCCGTCGTTCGCCGCCGGCATTTCGTCCTTCGTTTCTCCTCTCAACCGCTCCACGCGCCGCCCTGTAATCCGAGCTAAAGCGGAGCCGTCAGATAAGTCTGTTGAAATCATGAGGAAGTTCTCTGAGCAGTATGCTCGCAAGTCCGGAACATATTTCTGTGTCGATAAGGGAGTTACTTCTGTTGTTATCAAGGGATTGGCAGACCATAAAGATTCGTTGGGCGCACCACTCTGCCCTTGTCGGCATTATGATGATAAACCTGCCGAGGCAGGCCAAGGCTTTTGGAACTGCCCATGTGTTCCCATGAGAGAGAGGAAGGAATGCCACTGCATGCTCTTTCTCACTCCTGACAATGATTTTGCCGGACCGGAACAGACCATCTCCTTGGAAGAGATCAGAGAATCGACAGCAAACATGTAA

Protein Analysis

147

Amino Acids

16.23

Weight (kDa)

7.57

Isoelectric Point (pI)

55.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FeThRed_B PF02943 41 - 140 1.8e-42 Ferredoxin thioredoxin reductase catalytic beta chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015222)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04700 AT2G04700
fragaria_vesca FvH4_6g50060
malus_domestica MD09G1039900.v1.1 MD17G1040500.v1.1
prunus_persica Prupe.3G278500_v2.0.a1
pyrus_communis pycom111g03120 pycom17g03630
rosa_chinensis RchiOBHm_Chr2g0170331
rosa_laevigata RLG00000021946
rosa_multiflora Rmu_sc0012445.1_g000004
rosa_roxburghii Rroxscaffold_2G00081430
rosa_rugosa Rorug02G0548200
rosa_samantha Rh2AG619500 Rh2BG630400
rosa_wichuraiana Rw2G051320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 289
AccBSI CCGCTC 1 cut(s) 69
AccII CGCG 1 cut(s) 76
AccIII TCCGGA 1 cut(s) 164
AciI CCGC 5 cut(s) 8, 33, 67, 79, 101
AflIII ACRYGT 1 cut(s) 435
AgsI TTSAA 1 cut(s) 125
AluBI AGCT 2 cut(s) 20, 95
AluI AGCT 2 cut(s) 20, 95
Aor13HI TCCGGA 1 cut(s) 164
AoxI GGCC 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
AspLEI GCGC 2 cut(s) 78, 245
AspS9I GGNCC 1 cut(s) 386
AvaII GGWCC 1 cut(s) 386
BccI CCATC 1 cut(s) 407
BceAI ACGGC 1 cut(s) 91
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BfuAI ACCTGC 1 cut(s) 289
BisI GCNGC 2 cut(s) 33, 79
BlsI GCNGC 2 cut(s) 34, 80
Bme18I GGWCC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 1 cut(s) 105
BsaJI CCNNGG 3 cut(s) 285, 295, 405
BsaWI WCCGGW 2 cut(s) 164, 388
Bse118I RCCGGY 1 cut(s) 35
BseAI TCCGGA 1 cut(s) 164
BseDI CCNNGG 3 cut(s) 285, 295, 405
BseMII CTCAG 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 76
BshFI GGCC 1 cut(s) 294
BsiSI CCGG 4 cut(s) 36, 165, 384, 389
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 1 cut(s) 294
Bsp13I TCCGGA 1 cut(s) 164
Bsp143I GATC 1 cut(s) 414
BspACI CCGC 5 cut(s) 8, 33, 67, 79, 101
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 1 cut(s) 136
BspEI TCCGGA 1 cut(s) 164
BspFNI CGCG 1 cut(s) 76
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 105
BspMI ACCTGC 1 cut(s) 289
BsrBI CCGCTC 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 3 cut(s) 285, 295, 405
BssMI GATC 1 cut(s) 414
BssT1I CCWWGG 2 cut(s) 295, 405
Bst6I CTCTTC 1 cut(s) 405
BstC8I GCNNGC 4 cut(s) 37, 157, 292, 353
BstDEI CTNAG 1 cut(s) 144
BstFNI CGCG 1 cut(s) 76
BstHHI GCGC 2 cut(s) 78, 245
BstKTI GATC 1 cut(s) 417
BstMBI GATC 1 cut(s) 414
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNSI RCATGY 2 cut(s) 355, 439
BstUI CGCG 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 406
BsuRI GGCC 1 cut(s) 294
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 346
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 4 cut(s) 37, 157, 292, 353
CciI TCATGA 1 cut(s) 129
CfoI GCGC 2 cut(s) 78, 245
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 386
CpoI CGGWCCG 1 cut(s) 386
CspI CGGWCCG 1 cut(s) 386
CviAII CATG 5 cut(s) 130, 315, 325, 352, 436
CviJI RGCY 5 cut(s) 20, 95, 106, 294, 300
CviKI_1 RGCY 5 cut(s) 20, 95, 106, 294, 300
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 416
DpnII GATC 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 295, 405
Eco47I GGWCC 1 cut(s) 386
EcoT14I CCWWGG 2 cut(s) 295, 405
ErhI CCWWGG 2 cut(s) 295, 405
FaeI CATG 5 cut(s) 133, 318, 328, 355, 439
FaiI YATR 9 cut(s) 131, 153, 172, 228, 270, 316, 326, 353, 437
FatI CATG 5 cut(s) 129, 314, 324, 351, 435
Fnu4HI GCNGC 2 cut(s) 33, 79
Fsp4HI GCNGC 2 cut(s) 33, 79
GlaI GCGC 2 cut(s) 77, 244
GluI GCNGC 2 cut(s) 33, 79
HaeIII GGCC 1 cut(s) 294
HapII CCGG 4 cut(s) 36, 165, 384, 389
HhaI GCGC 2 cut(s) 78, 245
Hin1II CATG 5 cut(s) 133, 318, 328, 355, 439
Hin6I GCGC 2 cut(s) 76, 243
HinP1I GCGC 2 cut(s) 76, 243
HinfI GANTC 3 cut(s) 4, 233, 422
HpaII CCGG 4 cut(s) 36, 165, 384, 389
Hpy188I TCNGA 4 cut(s) 92, 112, 145, 419
Hpy188III TCNNGA 3 cut(s) 130, 165, 368
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 58, 331
HpyCH4V TGCA 1 cut(s) 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 5 cut(s) 133, 318, 328, 355, 439
HspAI GCGC 2 cut(s) 76, 243
Kpn2I TCCGGA 1 cut(s) 164
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 414
LmnI GCTCC 3 cut(s) 25, 74, 103
LpnPI CCDG 8 cut(s) 49, 96, 178, 276, 294, 381, 397, 402
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 416
MbiI CCGCTC 1 cut(s) 69
MboI GATC 1 cut(s) 414
MboII GAAGA 1 cut(s) 422
MnlI CCTC 4 cut(s) 69, 126, 280, 327
MroI TCCGGA 1 cut(s) 164
MroNI GCCGGC 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 4 cut(s) 36, 165, 384, 389
Mva1269I GAATGC 1 cut(s) 347
MvnI CGCG 1 cut(s) 76
MwoI GCNNNNNNNGC 1 cut(s) 75
NaeI GCCGGC 1 cut(s) 37
NdeII GATC 1 cut(s) 414
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 5 cut(s) 133, 318, 328, 355, 439
NlaIV GGNNCC 1 cut(s) 105
NmeAIII GCCGAG 1 cut(s) 310
NspI RCATGY 2 cut(s) 355, 439
PaeI GCATGC 1 cut(s) 355
PagI TCATGA 1 cut(s) 129
PciI ACATGT 1 cut(s) 435
PctI GAATGC 1 cut(s) 347
PdiI GCCGGC 1 cut(s) 37
PfeI GAWTC 2 cut(s) 233, 422
PkrI GCNGC 2 cut(s) 34, 80
PscI ACATGT 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 270
Rsr2I CGGWCCG 1 cut(s) 386
RsrII CGGWCCG 1 cut(s) 386
SatI GCNGC 2 cut(s) 33, 79
Sau3AI GATC 1 cut(s) 414
Sau96I GGNCC 1 cut(s) 386
SetI ASST 3 cut(s) 22, 97, 283
SinI GGWCC 1 cut(s) 386
SmiMI CAYNNNNRTG 1 cut(s) 270
SphI GCATGC 1 cut(s) 355
SsiI CCGC 5 cut(s) 8, 33, 67, 79, 101
StyI CCWWGG 2 cut(s) 295, 405
TaqI TCGA 2 cut(s) 183, 425
TauI GCSGC 2 cut(s) 35, 81
TfiI GAWTC 2 cut(s) 233, 422
TscAI CASTG 1 cut(s) 353
TspGWI ACGGA 1 cut(s) 12
TspRI CASTG 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 386
XceI RCATGY 2 cut(s) 355, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.