Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012445.1

Orthogroup ID

OG0015222

Physical Location & Seq

Genomic Coordinates Forward (+)

16764 .. 19161

Gene Structure 2398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012445.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgactctccagctccaagctccgtcgttcggcgccaccatttcctcgctcccttctcctctcacccgctccacccgccgcttcgtaattcgagctcaagttgaaccaactgagaagtctgttgagattatgaggaagttttcggagcagtatgctcgtaagtccgggacatatttctgtgttgataagggtgtcacttctgttgttatcaagggattggcagaccacaaagattcattgggtgctccactttgcccttgtcggcattacgatgacaaaccggcagaggctggccaaggcttttggaactgcccctgtgttcccatgagggaaaggaaggaatgccactgcatgctctttctcacccctgaaaatgattttgctggacaagatcagaccatcaccttggaggagatccgagaatcgaccgcaaacatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009055 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016491 GO:0016730 GO:0022900 GO:0030385 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051536 GO:0051539 GO:0051540 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FeThRed_B

Protein Analysis

146

Amino Acids

16.36

Weight (kDa)

6.81

Isoelectric Point (pI)

60.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04700 AT2G04700
fragaria_vesca	FvH4_6g50060
malus_domestica	MD09G1039900.v1.1 MD17G1040500.v1.1
prunus_persica	Prupe.3G278500_v2.0.a1
pyrus_communis	pycom111g03120 pycom17g03630
rosa_chinensis	RchiOBHm_Chr2g0170331
rosa_laevigata	RLG00000021946
rosa_multiflora	Rmu_sc0012445.1_g000004
rosa_roxburghii	Rroxscaffold_2G00081430
rosa_rugosa	Rorug02G0548200
rosa_samantha	Rh2AG619500 Rh2BG630400
rosa_wichuraiana	Rw2G051320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	69
AciI	CCGC	4 cut(s)	67, 76, 79, 429
AclWI	GGATC	1 cut(s)	409
AcoI	YGGCCR	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	104
AluBI	AGCT	3 cut(s)	13, 20, 95
AluI	AGCT	3 cut(s)	13, 20, 95
Alw21I	GWGCWC	2 cut(s)	97, 247
AlwI	GGATC	1 cut(s)	409
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	3 cut(s)	55, 355, 394
BalI	TGGCCA	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	2 cut(s)	97, 247
BccI	CCATC	1 cut(s)	407
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BcnI	CCSGG	1 cut(s)	166
BfoI	RGCGCY	1 cut(s)	36
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	295, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse118I	RCCGGY	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	295, 405
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	102
BseRI	GAGGAG	2 cut(s)	48, 425
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	429
BsiHKAI	GWGCWC	2 cut(s)	97, 247
BsiSI	CCGG	2 cut(s)	165, 281
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	97, 247
Bsp143I	GATC	2 cut(s)	391, 414
BspACI	CCGC	4 cut(s)	67, 76, 79, 429
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	409
BspT107I	GGYRCC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	295, 405
BssMI	GATC	2 cut(s)	391, 414
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	2 cut(s)	295, 405
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	292, 353
BstDEI	CTNAG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	2 cut(s)	394, 417
BstMBI	GATC	2 cut(s)	391, 414
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	414
BstXI	CCANNNNNNTGG	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	346
Cac8I	GCNNGC	2 cut(s)	292, 353
CaiI	CAGNNNCTG	1 cut(s)	290
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	280
CviAII	CATG	2 cut(s)	325, 352
CviJI	RGCY	6 cut(s)	13, 20, 95, 290, 294, 300
CviKI_1	RGCY	6 cut(s)	13, 20, 95, 290, 294, 300
DdeI	CTNAG	1 cut(s)	111
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	2 cut(s)	393, 416
DpnII	GATC	2 cut(s)	391, 414
EaeI	YGGCCR	1 cut(s)	292
Ecl136II	GAGCTC	1 cut(s)	95
Eco130I	CCWWGG	2 cut(s)	295, 405
Eco24I	GRGCYC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	295, 405
EcoT38I	GRGCYC	1 cut(s)	97
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	2 cut(s)	295, 405
FaeI	CATG	2 cut(s)	328, 355
FaiI	YATR	5 cut(s)	131, 153, 172, 326, 353
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	2 cut(s)	324, 351
FauI	CCCGC	2 cut(s)	74, 83
Fnu4HI	GCNGC	1 cut(s)	79
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	79
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	79
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	2 cut(s)	165, 281
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	328, 355
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	3 cut(s)	4, 233, 422
HpaII	CCGG	2 cut(s)	165, 281
HphI	GGTGA	3 cut(s)	55, 355, 394
Hpy188I	TCNGA	3 cut(s)	145, 396, 419
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	63, 331
HpyCH4V	TGCA	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	328, 355
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	391, 414
LmnI	GCTCC	6 cut(s)	18, 25, 54, 74, 145, 250
LpnPI	CCDG	7 cut(s)	23, 178, 276, 294, 328, 369, 381
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	393, 416
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	2 cut(s)	391, 414
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	2 cut(s)	97, 247
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	1 cut(s)	87
MluNI	TGGCCA	1 cut(s)	294
Mly113I	GGCGCC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	55, 69, 126, 280, 321, 403
Mox20I	TGGCCA	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	294
MspI	CCGG	2 cut(s)	165, 281
MspR9I	CCNGG	1 cut(s)	166
Mva1269I	GAATGC	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	75
NarI	GGCGCC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	2 cut(s)	391, 414
NlaIII	CATG	2 cut(s)	328, 355
NlaIV	GGNNCC	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	355
PaeI	GCATGC	1 cut(s)	355
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	233, 422
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	80
PluTI	GGCGCC	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	97
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	2 cut(s)	391, 414
ScrFI	CCNGG	1 cut(s)	166
SduI	GDGCHC	2 cut(s)	97, 247
SetI	ASST	4 cut(s)	15, 22, 97, 407
SfoI	GGCGCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
SphI	GCATGC	1 cut(s)	355
Sse9I	AATT	1 cut(s)	87
SsiI	CCGC	4 cut(s)	67, 76, 79, 429
SspDI	GGCGCC	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	2 cut(s)	295, 405
TaqI	TCGA	2 cut(s)	91, 425
TasI	AATT	1 cut(s)	87
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	233, 422
TscAI	CASTG	1 cut(s)	353
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	12
TspRI	CASTG	1 cut(s)	353
XceI	RCATGY	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.