Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008192

Physical Location & Seq

Genomic Coordinates Forward (+)

38852217 .. 38856044

Gene Structure 3828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGAGGAGCAATCACAGACAGATGAAAAGCTAGAGAGGCAGAAGCAAATTGATGATTGGCTTCCAATTACTTCCTCAAGGAATGCAACCTGGTGGCACTCAGCTTTCCATAATGTTAACTCCATGGTTGGAGTTGGTGTCCTAAGTCTTCCTTATGCCATGTCGAATCTAGGATGGGGTCCTGGCGTAGTTATTCTAGTACTATCATGGGTGATCACTTTATTCACATTATGGCAAATGGTTGAGATGCATGAAATGGTACCTGGGAAGCGATTCGATAGGTATCATGAACTGGGTCAGCATGCCTTTGGTGAAAAGCTTGGTCTTTGGATTGTGGTGCCCCAACAGCTAGTTTGCGAAGTTGGTGTGAACATCGTGTATATGGTGTCAGGAGGAAAAACACTGCAGAAGGTGCATAGCATAGTTCGGAAAGGCAAGAACCCGATCAAACTCACCTACTTCATCATGATCTATGCCTCGGCTCAGTTTGTACTCGCACATCTCCCCAGCTTTGGCTCCATTACTGGCGTGTCCTTAACTGCAGCAGTCATGTGCTTAAGTTACTCTACTATTGCATGGACATCTTCCGTACATAAGGGTGTTCAGGCAGATGTAGAATACGGATACAAAGCTCATACTGCATCGGGGACAGCTTTCAACTTCTTCACTGCCTTGGGAGACGTCGCGTTCGCCTATGCAGGCCATAATGTGGTTTTGGAGATCCAAGCAACACTCCCTTCTTCACCTGACAAGCCATCCAAGAAGCTTATGTGGAGAGGGGTGATCATTGCCTATACAGTCGTCGCTTTGTGCTATTTCCCGGTGGCCCTCATCGGATATTATACTTTTGGCAATAAAGTCGAGGACAACATCCTGATCTCCTTGGAGAAGCCTGCATGGCTCATCATAACAGCCAACATGTTTGTGGTTATTCATATTATTGGAGGTTATCAGCTATTTGCAATGCCAGTATTCGACATGATAGAAACTGTCCTGGTAAAGAAACTGCATTTTAGGCCTACACAAACTCTACGCTTCATTACGAGGAATGTATACGTTGCATTCACAATGTTCGTGGGCATTAGTTTCCCCTTCTTTGGTGGACTTCTGGGATTTTTTGGAGGATTTGCTTTCTCGCCAACAACCTACTTCCTCCCTTGCGTAATCTGGCTAGCCATAAAGAAACCACGGAAGTTTAGCTTATCTTGGTTCATTAACTGGATTTGCATTACACTGGGTGTCCTGCTCATGCTCCTATCACCTATAGGAGGGTTAAGGCATATAATACTTCAAGCGAAGGACTACGATTTCTACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

440

Amino Acids

49.34

Weight (kDa)

9.08

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	28 - 423	1e-107	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	40 - 204	5.7e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52900
malus_domestica	MD09G1016300.v1.1 MD17G1016900.v1.1
prunus_persica	Prupe.3G301000_v2.0.a1 Prupe.3G301000_v2.0.a1 Prupe.3G301100_v2.0.a1
pyrus_communis	pycom111g01320 pycom111g01330
rosa_chinensis	RchiOBHm_Chr2g0174601 RchiOBHm_Chr2g0174611
rosa_laevigata	RLG00000022275 RLG00000022276
rosa_multiflora	Rmu_sc0003649.1_g000003
rosa_roxburghii	Rroxscaffold_2G00078010 Rroxscaffold_2G00078020
rosa_rugosa	Rorug02G0578000 Rorug02G0578000 Rorug02G0578000
rosa_samantha	Rh2BG669900 Rh2CG633200 Rh2DG683800
rosa_wichuraiana	Rw2G053980 Rw2G053990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	684
Acc65I	GGTACC	1 cut(s)	259
AccB1I	GGYRCC	2 cut(s)	259, 337
AccB7I	CCANNNNNTGG	1 cut(s)	709
AccI	GTMKAC	1 cut(s)	1053
AccII	CGCG	1 cut(s)	686
AclWI	GGATC	1 cut(s)	715
AcyI	GRCGYC	1 cut(s)	681
AdeI	CACNNNGTG	1 cut(s)	1238
AfaI	GTAC	4 cut(s)	201, 261, 492, 591
AfiI	CCNNNNNNNGG	4 cut(s)	512, 709, 1097, 1268
AflII	CTTAAG	1 cut(s)	556
AflIII	ACRYGT	1 cut(s)	918
AgsI	TTSAA	2 cut(s)	658, 1292
AjnI	CCWGG	4 cut(s)	89, 181, 262, 993
Alw26I	GTCTC	1 cut(s)	672
AlwI	GGATC	1 cut(s)	715
AoxI	GGCC	3 cut(s)	700, 825, 1016
ApeKI	GCWGC	1 cut(s)	542
ArsI	GACNNNNNNTTYG	2 cut(s)	671, 703
Asp700I	GAANNNNTTC	1 cut(s)	272
Asp718I	GGTACC	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	179, 826
AsuC2I	CCSGG	1 cut(s)	821
AsuHPI	GGTGA	6 cut(s)	223, 323, 445, 735, 793, 1251
AsuNHI	GCTAGC	1 cut(s)	1171
AvaII	GGWCC	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	342
BanI	GGYRCC	2 cut(s)	259, 337
BbsI	GAAGAC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	2 cut(s)	168, 763
BcgI	CGANNNNNNTGC	2 cut(s)	841, 875
BciT130I	CCWGG	4 cut(s)	91, 183, 264, 995
BciVI	GTATCC	1 cut(s)	617
BclI	TGATCA	2 cut(s)	213, 783
BcnI	CCSGG	1 cut(s)	821
BcoDI	GTCTC	1 cut(s)	672
BfaI	CTAG	5 cut(s)	32, 170, 197, 350, 1172
BfmI	CTRYAG	3 cut(s)	404, 540, 1263
BfrI	CTTAAG	1 cut(s)	556
BfuI	GTATCC	1 cut(s)	617
BglI	GCCNNNNNGGC	1 cut(s)	898
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
BmcAI	AGTACT	1 cut(s)	201
Bme1390I	CCNGG	5 cut(s)	91, 183, 264, 821, 995
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	179, 826
BmiI	GGNNCC	4 cut(s)	180, 261, 339, 517
BmrFI	CCNGG	5 cut(s)	91, 183, 264, 821, 995
BmrI	ACTGGG	2 cut(s)	302, 1244
BmsI	GCATC	2 cut(s)	237, 650
BmtI	GCTAGC	1 cut(s)	1175
BmuI	ACTGGG	2 cut(s)	302, 1244
BpiI	GAAGAC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	61
BpuMI	CCSGG	1 cut(s)	821
BsaBI	GATNNNNATC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	681
BsaJI	CCNNGG	6 cut(s)	123, 263, 477, 672, 882, 1187
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	4 cut(s)	512, 709, 1097, 1268
Bse1I	ACTGG	5 cut(s)	297, 529, 968, 1223, 1239
Bse3DI	GCAATG	2 cut(s)	786, 969
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	4 cut(s)	91, 183, 264, 995
BseDI	CCNNGG	6 cut(s)	123, 263, 477, 672, 882, 1187
BseGI	GGATG	3 cut(s)	179, 755, 870
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	4 cut(s)	512, 709, 1097, 1268
BseMI	GCAATG	2 cut(s)	786, 969
BseMII	CTCAG	2 cut(s)	114, 497
BseNI	ACTGG	5 cut(s)	297, 529, 968, 1223, 1239
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	554
BseYI	CCCAGC	1 cut(s)	506
Bsh1236I	CGCG	1 cut(s)	686
BshFI	GGCC	3 cut(s)	702, 827, 1018
BshNI	GGYRCC	2 cut(s)	259, 337
BsiSI	CCGG	1 cut(s)	821
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	4 cut(s)	512, 709, 1097, 1268
BsmAI	GTCTC	1 cut(s)	672
BsmBI	CGTCTC	1 cut(s)	672
BsmFI	GGGAC	1 cut(s)	661
BsmI	GAATGC	2 cut(s)	88, 1061
BsnI	GGCC	3 cut(s)	702, 827, 1018
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	6 cut(s)	213, 444, 468, 720, 783, 876
Bsp19I	CCATGG	1 cut(s)	123
BspANI	GGCC	3 cut(s)	702, 827, 1018
BspCNI	CTCAG	2 cut(s)	113, 496
BspFNI	CGCG	1 cut(s)	686
BspHI	TCATGA	2 cut(s)	286, 465
BspLI	GGNNCC	4 cut(s)	180, 261, 339, 517
BspMAI	CTGCAG	2 cut(s)	408, 544
BspOI	GCTAGC	1 cut(s)	1175
BspPI	GGATC	1 cut(s)	715
BspT107I	GGYRCC	2 cut(s)	259, 337
BspTI	CTTAAG	1 cut(s)	556
BsrDI	GCAATG	2 cut(s)	786, 969
BsrI	ACTGG	5 cut(s)	297, 529, 968, 1223, 1239
BssECI	CCNNGG	6 cut(s)	123, 263, 477, 672, 882, 1187
BssMI	GATC	6 cut(s)	213, 444, 468, 720, 783, 876
BssNAI	GTATAC	1 cut(s)	1054
BssNI	GRCGYC	1 cut(s)	681
BssT1I	CCWWGG	3 cut(s)	123, 672, 882
Bst1107I	GTATAC	1 cut(s)	1054
Bst2UI	CCWGG	4 cut(s)	91, 183, 264, 995
Bst4CI	ACNGT	2 cut(s)	799, 991
BstACI	GRCGYC	1 cut(s)	681
BstAFI	CTTAAG	1 cut(s)	556
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstC8I	GCNNGC	4 cut(s)	303, 700, 894, 1173
BstDEI	CTNAG	3 cut(s)	100, 143, 483
BstDSI	CCRYGG	2 cut(s)	123, 1187
BstENI	CCTNNNNNAGG	1 cut(s)	1266
BstF5I	GGATG	3 cut(s)	179, 755, 870
BstFNI	CGCG	1 cut(s)	686
BstKTI	GATC	6 cut(s)	216, 447, 471, 723, 786, 879
BstMAI	GTCTC	1 cut(s)	672
BstMBI	GATC	6 cut(s)	213, 444, 468, 720, 783, 876
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 346, 412, 638, 898, 1015
BstNI	CCWGG	4 cut(s)	91, 183, 264, 995
BstNSI	RCATGY	2 cut(s)	305, 922
BstSCI	CCNGG	5 cut(s)	89, 181, 262, 819, 993
BstSFI	CTRYAG	3 cut(s)	404, 540, 1263
BstSLI	GKGCMC	1 cut(s)	342
BstUI	CGCG	1 cut(s)	686
BstV1I	GCAGC	1 cut(s)	554
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BstZ17I	GTATAC	1 cut(s)	1054
BsuI	GTATCC	1 cut(s)	617
BsuRI	GGCC	3 cut(s)	702, 827, 1018
BtgI	CCRYGG	2 cut(s)	123, 1187
BtsCI	GGATG	3 cut(s)	179, 755, 870
BtsI	GCAGTG	2 cut(s)	401, 666
BtsIMutI	CAGTG	3 cut(s)	401, 666, 1232
Cac8I	GCNNGC	4 cut(s)	303, 700, 894, 1173
CciI	TCATGA	2 cut(s)	286, 465
Cfr13I	GGNCC	2 cut(s)	179, 826
CsiI	ACCWGGT	1 cut(s)	89
Csp6I	GTAC	4 cut(s)	200, 260, 491, 590
CspCI	CAANNNNNGTGG	2 cut(s)	1056, 1091
CviQI	GTAC	4 cut(s)	200, 260, 491, 590
DdeI	CTNAG	3 cut(s)	100, 143, 483
DpnI	GATC	6 cut(s)	215, 446, 470, 722, 785, 878
DpnII	GATC	6 cut(s)	213, 444, 468, 720, 783, 876
DraIII	CACNNNGTG	1 cut(s)	1238
Eco130I	CCWWGG	3 cut(s)	123, 672, 882
Eco147I	AGGCCT	1 cut(s)	1018
Eco47I	GGWCC	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	1266
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	4 cut(s)	89, 181, 262, 993
EcoT14I	CCWWGG	3 cut(s)	123, 672, 882
EcoT22I	ATGCAT	1 cut(s)	252
ErhI	CCWWGG	3 cut(s)	123, 672, 882
Esp3I	CGTCTC	1 cut(s)	672
FalI	AAGNNNNNCTT	4 cut(s)	136, 168, 1184, 1216
FaqI	GGGAC	1 cut(s)	661
FbaI	TGATCA	2 cut(s)	213, 783
FblI	GTMKAC	1 cut(s)	1053
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	3 cut(s)	186, 742, 857
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	5 cut(s)	32, 170, 197, 350, 1172
GluI	GCNGC	1 cut(s)	543
GsaI	CCCAGC	1 cut(s)	510
HaeIII	GGCC	3 cut(s)	702, 827, 1018
HapII	CCGG	1 cut(s)	821
Hin1I	GRCGYC	1 cut(s)	681
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	2 cut(s)	317, 764
HinfI	GANTC	2 cut(s)	166, 273
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	821
HphI	GGTGA	6 cut(s)	223, 323, 445, 735, 793, 1251
Hpy166II	GTNNAC	4 cut(s)	118, 370, 1054, 1103
Hpy188I	TCNGA	2 cut(s)	429, 836
Hpy188III	TCNNGA	4 cut(s)	287, 390, 466, 874
Hpy8I	GTNNAC	4 cut(s)	118, 370, 1054, 1103
Hpy99I	CGWCG	2 cut(s)	686, 806
HpyAV	CCTTC	4 cut(s)	403, 747, 1102, 1291
HpyCH4III	ACNGT	2 cut(s)	799, 991
HpyCH4IV	ACGT	2 cut(s)	681, 1056
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 346, 412, 638, 898, 1015
HpyF3I	CTNAG	3 cut(s)	100, 143, 483
HpySE526I	ACGT	2 cut(s)	681, 1056
Hsp92I	GRCGYC	1 cut(s)	681
KpnI	GGTACC	1 cut(s)	263
Ksp22I	TGATCA	2 cut(s)	213, 783
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	6 cut(s)	213, 444, 468, 720, 783, 876
LmnI	GCTCC	3 cut(s)	7, 521, 1257
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	2 cut(s)	237, 650
MabI	ACCWGGT	1 cut(s)	89
MaeI	CTAG	5 cut(s)	32, 170, 197, 350, 1172
MaeII	ACGT	2 cut(s)	681, 1056
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	6 cut(s)	215, 446, 470, 722, 785, 878
MboI	GATC	6 cut(s)	213, 444, 468, 720, 783, 876
MboII	GAAGA	4 cut(s)	140, 576, 655, 732
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	3 cut(s)	48, 66, 1315
MmeI	TCCRAC	1 cut(s)	109
Mph1103I	ATGCAT	1 cut(s)	252
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	6 cut(s)	117, 536, 557, 1215, 1274, 1318
MslI	CAYNNNNRTG	2 cut(s)	597, 923
MspCI	CTTAAG	1 cut(s)	556
MspI	CCGG	1 cut(s)	821
MspR9I	CCNGG	5 cut(s)	91, 183, 264, 821, 995
Mva1269I	GAATGC	2 cut(s)	88, 1061
MvaI	CCWGG	4 cut(s)	91, 183, 264, 995
MvnI	CGCG	1 cut(s)	686
MwoI	GCNNNNNNNGC	6 cut(s)	37, 346, 412, 638, 898, 1015
NciI	CCSGG	1 cut(s)	821
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	6 cut(s)	213, 444, 468, 720, 783, 876
NheI	GCTAGC	1 cut(s)	1171
NlaIV	GGNNCC	4 cut(s)	180, 261, 339, 517
NmeAIII	GCCGAG	1 cut(s)	458
NsiI	ATGCAT	1 cut(s)	252
NspI	RCATGY	2 cut(s)	305, 922
PaeI	GCATGC	1 cut(s)	305
PagI	TCATGA	2 cut(s)	286, 465
PceI	AGGCCT	1 cut(s)	1018
PciI	ACATGT	1 cut(s)	918
PctI	GAATGC	2 cut(s)	88, 1061
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	166, 273
PflMI	CCANNNNNTGG	1 cut(s)	709
PkrI	GCNGC	1 cut(s)	544
PpuMI	RGGWCCY	1 cut(s)	179
PscI	ACATGT	1 cut(s)	918
Psp5II	RGGWCCY	1 cut(s)	179
Psp6I	CCWGG	4 cut(s)	89, 181, 262, 993
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	4 cut(s)	89, 181, 262, 993
PspN4I	GGNNCC	4 cut(s)	180, 261, 339, 517
PspPI	GGNCC	2 cut(s)	179, 826
PspPPI	RGGWCCY	1 cut(s)	179
PstI	CTGCAG	2 cut(s)	408, 544
PsuI	RGATCY	1 cut(s)	720
RsaI	GTAC	4 cut(s)	201, 261, 492, 591
RsaNI	GTAC	4 cut(s)	200, 260, 491, 590
RseI	CAYNNNNRTG	2 cut(s)	597, 923
SaqAI	TTAA	6 cut(s)	117, 536, 557, 1215, 1274, 1318
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	6 cut(s)	213, 444, 468, 720, 783, 876
Sau96I	GGNCC	2 cut(s)	179, 826
ScaI	AGTACT	1 cut(s)	201
ScrFI	CCNGG	5 cut(s)	91, 183, 264, 821, 995
SduI	GDGCHC	1 cut(s)	342
SexAI	ACCWGGT	1 cut(s)	89
SfaNI	GCATC	2 cut(s)	237, 650
SfcI	CTRYAG	3 cut(s)	404, 540, 1263
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	2 cut(s)	597, 923
SmlI	CTYRAG	2 cut(s)	76, 556
SmoI	CTYRAG	2 cut(s)	76, 556
SphI	GCATGC	1 cut(s)	305
Sse9I	AATT	3 cut(s)	48, 66, 1315
SseBI	AGGCCT	1 cut(s)	1018
SspMI	CTAG	5 cut(s)	32, 170, 197, 350, 1172
StuI	AGGCCT	1 cut(s)	1018
StyD4I	CCNGG	5 cut(s)	89, 181, 262, 819, 993
StyI	CCWWGG	3 cut(s)	123, 672, 882
TaaI	ACNGT	2 cut(s)	799, 991
TaiI	ACGT	2 cut(s)	684, 1059
TaqI	TCGA	4 cut(s)	164, 276, 861, 975
TasI	AATT	3 cut(s)	48, 66, 1315
TatI	WGTACW	2 cut(s)	199, 490
TfiI	GAWTC	2 cut(s)	166, 273
Tru1I	TTAA	6 cut(s)	117, 536, 557, 1215, 1274, 1318
Tru9I	TTAA	6 cut(s)	117, 536, 557, 1215, 1274, 1318
TscAI	CASTG	3 cut(s)	408, 673, 1239
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	7 cut(s)	39, 267, 303, 451, 923, 1027, 1201
TspGWI	ACGGA	3 cut(s)	577, 636, 1204
TspRI	CASTG	3 cut(s)	408, 673, 1239
Van91I	CCANNNNNTGG	1 cut(s)	709
Vha464I	CTTAAG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	179
XagI	CCTNNNNNAGG	1 cut(s)	1266
XceI	RCATGY	2 cut(s)	305, 922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	922
XmiI	GTMKAC	1 cut(s)	1053
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	5 cut(s)	32, 170, 197, 350, 1172
ZraI	GACGTC	1 cut(s)	682
ZrmI	AGTACT	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.