Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008192

Physical Location & Seq

Genomic Coordinates Forward (+)

26579906 .. 26582043

Gene Structure 2138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G301100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGGGGTTCAAGCTCCAACCGACCAAAACTCTTCCGTCCCCGTCCCCAGCAACATAGATGAGCAACTGGAGAAGCAATCACAGATAGTAGAACAACTAAAGAGGCAGAAGGAAATAGATGATTGGCTTCCAATCACTTCTTCAAGGAATGCAAAATGGTGGTACTCTGCTTTCCACAATGTCAATGCCATGGTTGGAGCTGGAGTCTTAAGTCTTCCCTTTGCCATGTCTAATCTTGGATGGGGTCCTGGTATTGTAATTCTGGTACTGTCATGGGTAATCACCTTGTTCACTCTATGGCAAATGGTTGAGATGCATGAAATGGTTCCTGGAAAGAGGTTTGATAGGTACCATGAGCTAGGTCAACATGCCTTTGGTGAAAAGCTTGGCCTTTGGATTGTGGTGCCTCAACAGCTGATTTGTGAAGTTGGTGTGGACATTGTGTATATGGTAACAGGTGGAAAATCCCTTCAGAAGATCCATATAATAGCTCGCAAAGACAAAGACCCAATCAAACTTACCTACTTCATCATGATCTTTGCCTCTGCTCAATTTGTCCTCTCCCATCTCCCCAACTTTAACTCCATCTCTGGAATTTCATTAGCTGCAGCAGTCATGTCATTAAGTTACTCTACTATTGCATGCACGGCTTCAGTCCACAAGGGTGTTCAGCCAGGTGTAGAATACGGGTATTTAGCTCAGAGCACATCGGGAACGGCCTTCAACTTCTTCACTGCCTTGGGGGACATTGCTTTTGCCTATTCAGGCCATAATGTAGTCTTGGAGATACAAGCAATAATCCCTTCTTCGCCGGAGAAGCCTTCGAAGAAGCCTATGTGGAGGGGAGTGGTGATCGCCTATATAGTCGTGGCCTTGTGCTACTTTCCTGTTGCTTTTATTGGTTATTATACTTTTGGCAACAAAGTTGATGACAACATCCTCATCTCCTTGGAGAAACCTGAATGGCTCATCATAACAGCAAACATGTTTGTTGTCATCCACGTTATAGGGGGTTATCAGTTATTTGCAATGCCAGTATTTGACATGATTGAATCCTTGTTGGTAAAGAAACTCCATTTTAGACCCACTACAAGGCTTCGCTTCATTACCCGGAACACTTATGTCGCATTCACAATGTTGGTCGGCATTACTTTTCCCTTCTTTGGTGGTCTTCTGGGATTCTTTGGAGGATTTGCGTTTTCCCCAACAACATACTTTCTCCCTTGCGTTATATGGCTTATCATCAAGAAACCAAGGAAGTTTAGCCTGTCTTGGTTTGTTAACTGGATTTGCATTACATTGGGTGTTCTGCTGATGATCCTATCACCCATTGGAGGGTTAAGGAATATCATACTTCAAGCCAAGAACTACAAATTCTACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

462

Amino Acids

51.73

Weight (kDa)

9.07

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52900
malus_domestica	MD09G1016300.v1.1 MD17G1016900.v1.1
prunus_persica	Prupe.3G301000_v2.0.a1 Prupe.3G301000_v2.0.a1 Prupe.3G301100_v2.0.a1
pyrus_communis	pycom111g01320 pycom111g01330
rosa_chinensis	RchiOBHm_Chr2g0174601 RchiOBHm_Chr2g0174611
rosa_laevigata	RLG00000022275 RLG00000022276
rosa_multiflora	Rmu_sc0003649.1_g000003
rosa_roxburghii	Rroxscaffold_2G00078010 Rroxscaffold_2G00078020
rosa_rugosa	Rorug02G0578000 Rorug02G0578000 Rorug02G0578000
rosa_samantha	Rh2BG669900 Rh2CG633200 Rh2DG683800
rosa_wichuraiana	Rw2G053980 Rw2G053990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	348
AccB1I	GGYRCC	2 cut(s)	348, 403
AclWI	GGATC	2 cut(s)	472, 1312
AcsI	RAATTY	2 cut(s)	594, 1373
AcuI	CTGAAG	2 cut(s)	455, 636
AfaI	GTAC	3 cut(s)	164, 267, 350
AfiI	CCNNNNNNNGG	4 cut(s)	1092, 1163, 1334, 1335
AflII	CTTAAG	1 cut(s)	208
AflIII	ACRYGT	1 cut(s)	984
AgsI	TTSAA	5 cut(s)	11, 144, 724, 1052, 1358
AjnI	CCWGG	3 cut(s)	247, 328, 673
AjuI	GAANNNNNNNTTGG	2 cut(s)	124, 156
AleI	CACNNNNGTG	1 cut(s)	663
AluBI	AGCT	8 cut(s)	14, 200, 358, 385, 415, 491, 605, 698
AluI	AGCT	8 cut(s)	14, 200, 358, 385, 415, 491, 605, 698
Alw21I	GWGCWC	1 cut(s)	707
AlwI	GGATC	2 cut(s)	472, 1312
AoxI	GGCC	4 cut(s)	388, 717, 766, 870
ApeKI	GCWGC	2 cut(s)	605, 608
ApoI	RAATTY	2 cut(s)	594, 1373
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
Asp700I	GAANNNNTTC	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	1111
AsuHPI	GGTGA	4 cut(s)	274, 389, 862, 1317
AsuII	TTCGAA	1 cut(s)	824
AvaII	GGWCC	1 cut(s)	245
BanI	GGYRCC	2 cut(s)	348, 403
BbsI	GAAGAC	2 cut(s)	206, 1163
Bbv12I	GWGCWC	1 cut(s)	707
BbvI	GCAGC	2 cut(s)	592, 620
BccI	CCATC	3 cut(s)	234, 573, 593
BceAI	ACGGC	2 cut(s)	663, 732
BciT130I	CCWGG	3 cut(s)	249, 330, 675
BcnI	CCSGG	1 cut(s)	1111
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	606
BfrI	CTTAAG	1 cut(s)	208
BisI	GCNGC	2 cut(s)	606, 609
BlsI	GCNGC	2 cut(s)	607, 610
Bme1390I	CCNGG	4 cut(s)	249, 330, 675, 1111
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	4 cut(s)	246, 327, 350, 405
BmrFI	CCNGG	4 cut(s)	249, 330, 675, 1111
BmsI	GCATC	1 cut(s)	303
BpiI	GAAGAC	2 cut(s)	206, 1163
BpmI	CTGGAG	2 cut(s)	89, 222
Bpu14I	TTCGAA	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	1111
BsaJI	CCNNGG	4 cut(s)	189, 738, 948, 1253
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 566, 596
Bsc4I	CCNNNNNNNGG	4 cut(s)	1092, 1163, 1334, 1335
Bse1I	ACTGG	3 cut(s)	72, 1034, 1289
Bse3DI	GCAATG	2 cut(s)	747, 1035
BseBI	CCWGG	3 cut(s)	249, 330, 675
BseDI	CCNNGG	4 cut(s)	189, 738, 948, 1253
BseGI	GGATG	3 cut(s)	245, 936, 996
BseLI	CCNNNNNNNGG	4 cut(s)	1092, 1163, 1334, 1335
BseMI	GCAATG	2 cut(s)	747, 1035
BseMII	CTCAG	1 cut(s)	713
BseNI	ACTGG	3 cut(s)	72, 1034, 1289
BseXI	GCAGC	2 cut(s)	592, 620
BseYI	CCCAGC	1 cut(s)	47
BshFI	GGCC	4 cut(s)	390, 719, 768, 872
BshNI	GGYRCC	2 cut(s)	348, 403
BsiHKAI	GWGCWC	1 cut(s)	707
BsiSI	CCGG	2 cut(s)	812, 1111
BslFI	GGGAC	3 cut(s)	23, 29, 758
BslI	CCNNNNNNNGG	4 cut(s)	1092, 1163, 1334, 1335
BsmFI	GGGAC	3 cut(s)	23, 29, 758
BsmI	GAATGC	2 cut(s)	154, 1127
BsnI	GGCC	4 cut(s)	390, 719, 768, 872
Bsp119I	TTCGAA	1 cut(s)	824
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp143I	GATC	4 cut(s)	477, 534, 852, 1317
Bsp19I	CCATGG	1 cut(s)	189
BspANI	GGCC	4 cut(s)	390, 719, 768, 872
BspCNI	CTCAG	1 cut(s)	712
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	4 cut(s)	246, 327, 350, 405
BspMAI	CTGCAG	1 cut(s)	610
BspPI	GGATC	2 cut(s)	472, 1312
BspT104I	TTCGAA	1 cut(s)	824
BspT107I	GGYRCC	2 cut(s)	348, 403
BspTI	CTTAAG	1 cut(s)	208
BsrDI	GCAATG	2 cut(s)	747, 1035
BsrI	ACTGG	3 cut(s)	72, 1034, 1289
BssECI	CCNNGG	4 cut(s)	189, 738, 948, 1253
BssMI	GATC	4 cut(s)	477, 534, 852, 1317
BssT1I	CCWWGG	4 cut(s)	189, 738, 948, 1253
Bst2UI	CCWGG	3 cut(s)	249, 330, 675
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	37
BstAFI	CTTAAG	1 cut(s)	208
BstBI	TTCGAA	1 cut(s)	824
BstC8I	GCNNGC	2 cut(s)	493, 643
BstDEI	CTNAG	1 cut(s)	699
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	3 cut(s)	245, 936, 996
BstKTI	GATC	4 cut(s)	480, 537, 855, 1320
BstMBI	GATC	4 cut(s)	477, 534, 852, 1317
BstMWI	GCNNNNNNNGC	3 cut(s)	412, 647, 817
BstNI	CCWGG	3 cut(s)	249, 330, 675
BstNSI	RCATGY	3 cut(s)	371, 645, 988
BstSCI	CCNGG	4 cut(s)	247, 328, 673, 1109
BstSFI	CTRYAG	1 cut(s)	606
BstV1I	GCAGC	2 cut(s)	592, 620
BstV2I	GAAGAC	2 cut(s)	206, 1163
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BsuRI	GGCC	4 cut(s)	390, 719, 768, 872
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	3 cut(s)	245, 936, 996
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	1 cut(s)	732
Cac8I	GCNNGC	2 cut(s)	493, 643
CciI	TCATGA	1 cut(s)	531
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	3 cut(s)	163, 266, 349
CviQI	GTAC	3 cut(s)	163, 266, 349
DdeI	CTNAG	1 cut(s)	699
DpnI	GATC	4 cut(s)	479, 536, 854, 1319
DpnII	GATC	4 cut(s)	477, 534, 852, 1317
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco130I	CCWWGG	4 cut(s)	189, 738, 948, 1253
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	455, 636
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRII	CCWGG	3 cut(s)	247, 328, 673
EcoT14I	CCWWGG	4 cut(s)	189, 738, 948, 1253
EcoT22I	ATGCAT	1 cut(s)	318
ErhI	CCWWGG	4 cut(s)	189, 738, 948, 1253
FaqI	GGGAC	3 cut(s)	23, 29, 758
Fnu4HI	GCNGC	2 cut(s)	606, 609
FokI	GGATG	3 cut(s)	252, 923, 983
Fsp4HI	GCNGC	2 cut(s)	606, 609
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	2 cut(s)	606, 609
GsaI	CCCAGC	1 cut(s)	51
GsuI	CTGGAG	2 cut(s)	89, 222
HaeIII	GGCC	4 cut(s)	390, 719, 768, 872
HapII	CCGG	2 cut(s)	812, 1111
HincII	GTYRAC	2 cut(s)	365, 1282
HindII	GTYRAC	2 cut(s)	365, 1282
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	3 cut(s)	204, 1052, 1179
HpaI	GTTAAC	1 cut(s)	1282
HpaII	CCGG	2 cut(s)	812, 1111
HphI	GGTGA	4 cut(s)	274, 389, 862, 1317
Hpy166II	GTNNAC	5 cut(s)	291, 365, 436, 658, 1282
Hpy188I	TCNGA	2 cut(s)	474, 702
Hpy188III	TCNNGA	4 cut(s)	532, 591, 711, 1246
Hpy8I	GTNNAC	5 cut(s)	291, 365, 436, 658, 1282
HpyAV	CCTTC	6 cut(s)	103, 479, 730, 813, 831, 1168
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4IV	ACGT	1 cut(s)	1002
HpyCH4V	TGCA	7 cut(s)	152, 316, 608, 641, 645, 1028, 1293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	412, 647, 817
HpyF3I	CTNAG	1 cut(s)	699
HpySE526I	ACGT	1 cut(s)	1002
KpnI	GGTACC	1 cut(s)	352
KspAI	GTTAAC	1 cut(s)	1282
Kzo9I	GATC	4 cut(s)	477, 534, 852, 1317
LmnI	GCTCC	2 cut(s)	19, 197
Lsp1109I	GCAGC	2 cut(s)	592, 620
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	1002
MaeIII	GTNAC	2 cut(s)	451, 626
MalI	GATC	4 cut(s)	479, 536, 854, 1319
MboI	GATC	4 cut(s)	477, 534, 852, 1317
MboII	GAAGA	8 cut(s)	24, 132, 206, 487, 721, 798, 838, 1163
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	707
MluCI	AATT	4 cut(s)	258, 551, 594, 1373
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	2 cut(s)	41, 175
MnlI	CCTC	9 cut(s)	96, 330, 417, 553, 569, 834, 950, 1181, 1328
Mph1103I	ATGCAT	1 cut(s)	318
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	6 cut(s)	209, 579, 623, 1281, 1340, 1384
MslI	CAYNNNNRTG	1 cut(s)	663
MspA1I	CMGCKG	1 cut(s)	415
MspCI	CTTAAG	1 cut(s)	208
MspI	CCGG	2 cut(s)	812, 1111
MspR9I	CCNGG	4 cut(s)	249, 330, 675, 1111
Mva1269I	GAATGC	2 cut(s)	154, 1127
MvaI	CCWGG	3 cut(s)	249, 330, 675
MwoI	GCNNNNNNNGC	3 cut(s)	412, 647, 817
NciI	CCSGG	1 cut(s)	1111
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	4 cut(s)	477, 534, 852, 1317
NlaIV	GGNNCC	4 cut(s)	246, 327, 350, 405
NsiI	ATGCAT	1 cut(s)	318
NspI	RCATGY	3 cut(s)	371, 645, 988
NspV	TTCGAA	1 cut(s)	824
OliI	CACNNNNGTG	1 cut(s)	663
PaeI	GCATGC	1 cut(s)	645
PagI	TCATGA	1 cut(s)	531
PciI	ACATGT	1 cut(s)	984
PctI	GAATGC	2 cut(s)	154, 1127
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	1052, 1179
PfoI	TCCNGGA	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	607, 610
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	245
PscI	ACATGT	1 cut(s)	984
Psp5II	RGGWCCY	1 cut(s)	245
Psp6I	CCWGG	3 cut(s)	247, 328, 673
PspFI	CCCAGC	1 cut(s)	47
PspGI	CCWGG	3 cut(s)	247, 328, 673
PspN4I	GGNNCC	4 cut(s)	246, 327, 350, 405
PspPI	GGNCC	1 cut(s)	245
PspPPI	RGGWCCY	1 cut(s)	245
PstI	CTGCAG	1 cut(s)	610
PsuI	RGATCY	1 cut(s)	477
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	3 cut(s)	164, 267, 350
RsaNI	GTAC	3 cut(s)	163, 266, 349
RseI	CAYNNNNRTG	1 cut(s)	663
SaqAI	TTAA	6 cut(s)	209, 579, 623, 1281, 1340, 1384
SatI	GCNGC	2 cut(s)	606, 609
Sau3AI	GATC	4 cut(s)	477, 534, 852, 1317
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	4 cut(s)	249, 330, 675, 1111
SduI	GDGCHC	1 cut(s)	707
SfaNI	GCATC	1 cut(s)	303
SfcI	CTRYAG	1 cut(s)	606
SfuI	TTCGAA	1 cut(s)	824
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	663
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
SphI	GCATGC	1 cut(s)	645
Sse9I	AATT	4 cut(s)	258, 551, 594, 1373
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	4 cut(s)	247, 328, 673, 1109
StyI	CCWWGG	4 cut(s)	189, 738, 948, 1253
TaaI	ACNGT	1 cut(s)	270
TaiI	ACGT	1 cut(s)	1005
TaqI	TCGA	1 cut(s)	824
TasI	AATT	4 cut(s)	258, 551, 594, 1373
TfiI	GAWTC	2 cut(s)	1052, 1179
Tru1I	TTAA	6 cut(s)	209, 579, 623, 1281, 1340, 1384
Tru9I	TTAA	6 cut(s)	209, 579, 623, 1281, 1340, 1384
TscAI	CASTG	1 cut(s)	739
TseI	GCWGC	2 cut(s)	605, 608
TspDTI	ATGAA	4 cut(s)	333, 517, 588, 1093
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	739
Vha464I	CTTAAG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	2 cut(s)	594, 1373
XceI	RCATGY	3 cut(s)	371, 645, 988
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	1 cut(s)	359
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.