Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008192

Physical Location & Seq

Genomic Coordinates Forward (+)

26576110 .. 26579042

Gene Structure 2933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G301000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGGGGTTCAAGCTCCAACCGACCAAAACTCTTCCGTCCCCGTCTCCAGCAATAAATCACAGATAGACGAGCGACCCGAGAAGCAATCGCAGATAGATGAACAACTAAAGAGGCAGAAGGAAATAGATGATTGGCTTCCAATCACTTCTTCAAGGAATGCAAAATGGTGGTACTCAGCTTTCCACAATGTCACTGCCATGGTTGGAGCTGGTGTTCTCAGTCTCCCTTATGCCATGTCCAATCTTGGATGGGGTCCTGGTACTGTTATTCTGGTACTGTCGTGGGTGATCACCCTGTTCACTCTATGGCAAATGGTTGAGATGCATGAAATGGTTCCCGGAAAGAGGTTTGATAGGTACCATGAGCTGGGTCAACATGCCTTTGGTGAAAAGCTTGGACTTTGGATTGTGGTGCCCCAACAGCTGATATGCGAGGTTGGTGTGGACATTGTGTATATGGTCACAGGTGGAAAATCCCTGCAGAAGATCCATAAAATAGCTCGCAAAGACAAAGACCCAATCAAACTCACCTACTTCATCATGATCTTTGCCTCTGCTCACTTTGTGCTCGCCCATCTCCCCAACTTTAACTCCATCTCTGGTGTTTCATTAGCTGCAGCAGTCATGTCATTAAGTTACTCTACTATTGCATGGACGGCTTCCGTCCACAAGGGTGTTCAGCCAGATGTAGAATACGGGTATTTAGCTCACAGCACATCGGGAACGGTCTTCAACTTCTTCACTGCCTTAGGGGACGTAGCTTTTGCCTATGCAGGCCATAATGTGGTCTTGGAAATCCAAGCAACAATCCCTTCTTCTCCGGAGAAGCCATCGAAGAAGCCTATGTGGAGAGGAGTGGTGATCGCCTATATAGTCGTGGCCTTATGCTACTTTCCAGTTGCTTTCATTGGATATTACATTTTTGGCAACAAAGTTGAGGACAACATCCTCATCTCCTTGGAAAAACCTGAATGGCTTATCATAACAGCAAACATGTTTGTTGTCATCCATGTCATTGGGAGTTATCAGCTATATGCAATGCCAGTATTTGACATGATAGAAACCTTGTTGGTAAAGAAACTCCATTTTAGACCCACTACAATGCTTCGCTTCATTTCCCGGAACACTTATGTCGCATTCACAATGTTCGTTGGCATTACTTTTCCCTTCTTTGGTGGTCTTCTAGGATTCTTTGGAGGATTTGCCTTTTCCCCAACAACATACTTTCTCCCTTGCATTATGTGGCTTACCGTCAAGAAACCAAGGAAGTTTAGCCTATCTTGGGTTGTTAACTGGATTTGCATTACACTGGGTGTTCTGCTGATGATCCTATCACCTATTGGAGGGTTAAGGAATATCATACTTCAAGCTAAGAACTACAAATTCTACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

465

Amino Acids

52.25

Weight (kDa)

9.16

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52900
malus_domestica	MD09G1016300.v1.1 MD17G1016900.v1.1
prunus_persica	Prupe.3G301000_v2.0.a1 Prupe.3G301000_v2.0.a1 Prupe.3G301100_v2.0.a1
pyrus_communis	pycom111g01320 pycom111g01330
rosa_chinensis	RchiOBHm_Chr2g0174601 RchiOBHm_Chr2g0174611
rosa_laevigata	RLG00000022275 RLG00000022276
rosa_multiflora	Rmu_sc0003649.1_g000003
rosa_roxburghii	Rroxscaffold_2G00078010 Rroxscaffold_2G00078020
rosa_rugosa	Rorug02G0578000 Rorug02G0578000 Rorug02G0578000
rosa_samantha	Rh2BG669900 Rh2CG633200 Rh2DG683800
rosa_wichuraiana	Rw2G053980 Rw2G053990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	357
AccB1I	GGYRCC	2 cut(s)	357, 412
AccB7I	CCANNNNNTGG	2 cut(s)	367, 784
AccIII	TCCGGA	1 cut(s)	820
AclWI	GGATC	2 cut(s)	481, 1321
AcsI	RAATTY	1 cut(s)	1382
AdeI	CACNNNGTG	2 cut(s)	565, 1313
AfaI	GTAC	4 cut(s)	173, 262, 276, 359
AfiI	CCNNNNNNNGG	6 cut(s)	345, 367, 784, 1172, 1282, 1343
AflIII	ACRYGT	1 cut(s)	993
AgsI	TTSAA	4 cut(s)	11, 153, 733, 1367
AjnI	CCWGG	1 cut(s)	256
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AleI	CACNNNNGTG	1 cut(s)	672
AloI	GAACNNNNNNTCC	2 cut(s)	198, 230
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	2 cut(s)	49, 227
AlwI	GGATC	2 cut(s)	481, 1321
Ama87I	CYCGRG	1 cut(s)	77
Aor13HI	TCCGGA	1 cut(s)	820
AoxI	GGCC	2 cut(s)	775, 879
ApeKI	GCWGC	2 cut(s)	614, 617
ApoI	RAATTY	1 cut(s)	1382
ArsI	GACNNNNNNTTYG	2 cut(s)	746, 778
Asp700I	GAANNNNTTC	1 cut(s)	333
Asp718I	GGTACC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	2 cut(s)	339, 1120
AsuHPI	GGTGA	6 cut(s)	283, 298, 398, 520, 871, 1326
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	254
AxyI	CCTNAGG	1 cut(s)	748
BaeGI	GKGCMC	1 cut(s)	417
BaeI	ACNNNNGTAYC	2 cut(s)	266, 299
BanI	GGYRCC	2 cut(s)	357, 412
BbsI	GAAGAC	2 cut(s)	721, 1172
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	2 cut(s)	601, 629
BccI	CCATC	4 cut(s)	243, 582, 602, 838
BceAI	ACGGC	1 cut(s)	672
BciT130I	CCWGG	1 cut(s)	258
BclI	TGATCA	1 cut(s)	288
BcnI	CCSGG	2 cut(s)	339, 1120
BcoDI	GTCTC	2 cut(s)	49, 227
BfaI	CTAG	1 cut(s)	1184
BfmI	CTRYAG	2 cut(s)	479, 615
BisI	GCNGC	2 cut(s)	615, 618
BlsI	GCNGC	2 cut(s)	616, 619
Bme1390I	CCNGG	3 cut(s)	258, 339, 1120
Bme18I	GGWCC	1 cut(s)	254
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	4 cut(s)	255, 336, 359, 414
BmrFI	CCNGG	3 cut(s)	258, 339, 1120
BmrI	ACTGGG	1 cut(s)	1319
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	1319
BpiI	GAAGAC	2 cut(s)	721, 1172
BpmI	CTGGAG	1 cut(s)	31
BpuMI	CCSGG	2 cut(s)	339, 1120
BsaJI	CCNNGG	3 cut(s)	198, 957, 1262
BsaWI	WCCGGW	1 cut(s)	820
BsaXI	ACNNNNNCTCC	4 cut(s)	198, 228, 575, 605
Bsc4I	CCNNNNNNNGG	6 cut(s)	345, 367, 784, 1172, 1282, 1343
Bse1I	ACTGG	4 cut(s)	896, 1043, 1298, 1314
Bse21I	CCTNAGG	1 cut(s)	748
Bse3DI	GCAATG	1 cut(s)	1044
BseAI	TCCGGA	1 cut(s)	820
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	3 cut(s)	198, 957, 1262
BseGI	GGATG	3 cut(s)	254, 945, 1005
BseLI	CCNNNNNNNGG	6 cut(s)	345, 367, 784, 1172, 1282, 1343
BseMI	GCAATG	1 cut(s)	1044
BseMII	CTCAG	2 cut(s)	189, 232
BseNI	ACTGG	4 cut(s)	896, 1043, 1298, 1314
BseRI	GAGGAG	1 cut(s)	867
BseSI	GKGCMC	1 cut(s)	417
BseXI	GCAGC	2 cut(s)	601, 629
BseYI	CCCAGC	1 cut(s)	367
BshFI	GGCC	2 cut(s)	777, 881
BshNI	GGYRCC	2 cut(s)	357, 412
BsiHKAI	GWGCWC	1 cut(s)	570
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	3 cut(s)	339, 821, 1120
BslFI	GGGAC	2 cut(s)	23, 767
BslI	CCNNNNNNNGG	6 cut(s)	345, 367, 784, 1172, 1282, 1343
BsmAI	GTCTC	2 cut(s)	49, 227
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	2 cut(s)	23, 767
BsmI	GAATGC	2 cut(s)	163, 1136
BsnI	GGCC	2 cut(s)	777, 881
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	417, 570
Bsp13I	TCCGGA	1 cut(s)	820
Bsp143I	GATC	5 cut(s)	288, 486, 543, 861, 1326
Bsp19I	CCATGG	1 cut(s)	198
BspANI	GGCC	2 cut(s)	777, 881
BspCNI	CTCAG	2 cut(s)	188, 231
BspEI	TCCGGA	1 cut(s)	820
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	4 cut(s)	255, 336, 359, 414
BspMAI	CTGCAG	2 cut(s)	483, 619
BspPI	GGATC	2 cut(s)	481, 1321
BspT107I	GGYRCC	2 cut(s)	357, 412
BsrDI	GCAATG	1 cut(s)	1044
BsrI	ACTGG	4 cut(s)	896, 1043, 1298, 1314
BssECI	CCNNGG	3 cut(s)	198, 957, 1262
BssMI	GATC	5 cut(s)	288, 486, 543, 861, 1326
BssT1I	CCWWGG	3 cut(s)	198, 957, 1262
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	4 cut(s)	265, 279, 727, 1252
Bst6I	CTCTTC	1 cut(s)	37
BstC8I	GCNNGC	3 cut(s)	502, 570, 775
BstDEI	CTNAG	4 cut(s)	175, 218, 748, 1371
BstDSI	CCRYGG	1 cut(s)	198
BstENI	CCTNNNNNAGG	1 cut(s)	1341
BstF5I	GGATG	3 cut(s)	254, 945, 1005
BstKTI	GATC	5 cut(s)	291, 489, 546, 864, 1329
BstMAI	GTCTC	2 cut(s)	49, 227
BstMBI	GATC	5 cut(s)	288, 486, 543, 861, 1326
BstMWI	GCNNNNNNNGC	2 cut(s)	421, 656
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	2 cut(s)	380, 997
BstSCI	CCNGG	3 cut(s)	256, 337, 1118
BstSFI	CTRYAG	2 cut(s)	479, 615
BstSLI	GKGCMC	1 cut(s)	417
BstV1I	GCAGC	2 cut(s)	601, 629
BstV2I	GAAGAC	2 cut(s)	721, 1172
BstX2I	RGATCY	1 cut(s)	486
BstXI	CCANNNNNNTGG	1 cut(s)	1016
BstYI	RGATCY	1 cut(s)	486
Bsu36I	CCTNAGG	1 cut(s)	748
BsuRI	GGCC	2 cut(s)	777, 881
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	3 cut(s)	254, 945, 1005
BtsI	GCAGTG	2 cut(s)	192, 741
BtsIMutI	CAGTG	3 cut(s)	192, 741, 1307
Cac8I	GCNNGC	3 cut(s)	502, 570, 775
CciI	TCATGA	1 cut(s)	540
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	4 cut(s)	172, 261, 275, 358
CviQI	GTAC	4 cut(s)	172, 261, 275, 358
DdeI	CTNAG	4 cut(s)	175, 218, 748, 1371
DpnI	GATC	5 cut(s)	290, 488, 545, 863, 1328
DpnII	GATC	5 cut(s)	288, 486, 543, 861, 1326
DraIII	CACNNNGTG	2 cut(s)	565, 1313
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco130I	CCWWGG	3 cut(s)	198, 957, 1262
Eco47I	GGWCC	1 cut(s)	254
Eco81I	CCTNAGG	1 cut(s)	748
Eco88I	CYCGRG	1 cut(s)	77
EcoNI	CCTNNNNNAGG	1 cut(s)	1341
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	3 cut(s)	198, 957, 1262
EcoT22I	ATGCAT	1 cut(s)	327
ErhI	CCWWGG	3 cut(s)	198, 957, 1262
Esp3I	CGTCTC	1 cut(s)	49
FaqI	GGGAC	2 cut(s)	23, 767
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	615, 618
FokI	GGATG	3 cut(s)	261, 932, 992
Fsp4HI	GCNGC	2 cut(s)	615, 618
FspBI	CTAG	1 cut(s)	1184
GluI	GCNGC	2 cut(s)	615, 618
GsaI	CCCAGC	1 cut(s)	371
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	777, 881
HapII	CCGG	3 cut(s)	339, 821, 1120
HincII	GTYRAC	2 cut(s)	374, 1291
HindII	GTYRAC	2 cut(s)	374, 1291
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	1 cut(s)	1188
HpaI	GTTAAC	1 cut(s)	1291
HpaII	CCGG	3 cut(s)	339, 821, 1120
HphI	GGTGA	6 cut(s)	283, 298, 398, 520, 871, 1326
Hpy166II	GTNNAC	5 cut(s)	300, 374, 445, 667, 1291
Hpy188III	TCNNGA	4 cut(s)	541, 720, 821, 1255
Hpy8I	GTNNAC	5 cut(s)	300, 374, 445, 667, 1291
HpyAV	CCTTC	3 cut(s)	112, 822, 1177
HpyCH4III	ACNGT	4 cut(s)	265, 279, 727, 1252
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	9 cut(s)	161, 325, 481, 617, 650, 773, 1037, 1236, 1302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	421, 656
HpyF3I	CTNAG	4 cut(s)	175, 218, 748, 1371
HpySE526I	ACGT	1 cut(s)	756
Kpn2I	TCCGGA	1 cut(s)	820
KpnI	GGTACC	1 cut(s)	361
Ksp22I	TGATCA	1 cut(s)	288
KspAI	GTTAAC	1 cut(s)	1291
Kzo9I	GATC	5 cut(s)	288, 486, 543, 861, 1326
LmnI	GCTCC	2 cut(s)	19, 206
Lsp1109I	GCAGC	2 cut(s)	601, 629
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	1184
MaeII	ACGT	1 cut(s)	756
MaeIII	GTNAC	3 cut(s)	190, 460, 635
MalI	GATC	5 cut(s)	290, 488, 545, 863, 1328
MboI	GATC	5 cut(s)	288, 486, 543, 861, 1326
MboII	GAAGA	8 cut(s)	24, 141, 496, 721, 730, 807, 847, 1172
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	2 cut(s)	417, 570
MluCI	AATT	2 cut(s)	1382, 1390
MmeI	TCCRAC	2 cut(s)	41, 184
MnlI	CCTC	9 cut(s)	105, 339, 427, 562, 845, 931, 959, 1190, 1337
Mph1103I	ATGCAT	1 cut(s)	327
MroI	TCCGGA	1 cut(s)	820
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	4 cut(s)	588, 632, 1290, 1349
MslI	CAYNNNNRTG	3 cut(s)	197, 672, 1100
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	3 cut(s)	339, 821, 1120
MspR9I	CCNGG	3 cut(s)	258, 339, 1120
Mva1269I	GAATGC	2 cut(s)	163, 1136
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	421, 656
NciI	CCSGG	2 cut(s)	339, 1120
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	5 cut(s)	288, 486, 543, 861, 1326
NlaIV	GGNNCC	4 cut(s)	255, 336, 359, 414
NmuCI	GTSAC	2 cut(s)	190, 460
NsiI	ATGCAT	1 cut(s)	327
NspI	RCATGY	2 cut(s)	380, 997
OliI	CACNNNNGTG	1 cut(s)	672
PagI	TCATGA	1 cut(s)	540
PciI	ACATGT	1 cut(s)	993
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	2 cut(s)	163, 1136
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	1188
PflMI	CCANNNNNTGG	2 cut(s)	367, 784
PfoI	TCCNGGA	2 cut(s)	337, 1118
PkrI	GCNGC	2 cut(s)	616, 619
PpuMI	RGGWCCY	1 cut(s)	254
PscI	ACATGT	1 cut(s)	993
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	4 cut(s)	255, 336, 359, 414
PspPI	GGNCC	1 cut(s)	254
PspPPI	RGGWCCY	1 cut(s)	254
PstI	CTGCAG	2 cut(s)	483, 619
PsuI	RGATCY	1 cut(s)	486
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	4 cut(s)	173, 262, 276, 359
RsaNI	GTAC	4 cut(s)	172, 261, 275, 358
RseI	CAYNNNNRTG	3 cut(s)	197, 672, 1100
SaqAI	TTAA	4 cut(s)	588, 632, 1290, 1349
SatI	GCNGC	2 cut(s)	615, 618
Sau3AI	GATC	5 cut(s)	288, 486, 543, 861, 1326
Sau96I	GGNCC	1 cut(s)	254
ScrFI	CCNGG	3 cut(s)	258, 339, 1120
SduI	GDGCHC	2 cut(s)	417, 570
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	2 cut(s)	479, 615
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	3 cut(s)	197, 672, 1100
Sse9I	AATT	2 cut(s)	1382, 1390
SspMI	CTAG	1 cut(s)	1184
StyD4I	CCNGG	3 cut(s)	256, 337, 1118
StyI	CCWWGG	3 cut(s)	198, 957, 1262
TaaI	ACNGT	4 cut(s)	265, 279, 727, 1252
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	1 cut(s)	833
TasI	AATT	2 cut(s)	1382, 1390
TfiI	GAWTC	1 cut(s)	1188
Tru1I	TTAA	4 cut(s)	588, 632, 1290, 1349
Tru9I	TTAA	4 cut(s)	588, 632, 1290, 1349
TscAI	CASTG	3 cut(s)	199, 748, 1314
TseFI	GTSAC	2 cut(s)	190, 460
TseI	GCWGC	2 cut(s)	614, 617
Tsp45I	GTSAC	2 cut(s)	190, 460
TspDTI	ATGAA	6 cut(s)	114, 342, 526, 597, 895, 1102
TspGWI	ACGGA	2 cut(s)	25, 652
TspRI	CASTG	3 cut(s)	199, 748, 1314
Van91I	CCANNNNNTGG	2 cut(s)	367, 784
VpaK11BI	GGWCC	1 cut(s)	254
XagI	CCTNNNNNAGG	1 cut(s)	1341
XapI	RAATTY	1 cut(s)	1382
XceI	RCATGY	2 cut(s)	380, 997
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	1 cut(s)	1184
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.