RchiOBHm_Chr2g0174611

lysine histidine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008192
Physical Location & Seq
Forward (+)
87156144 .. 87158322
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54175

Sequence Viewer

Length: 1380 bp
ATGGGAACTCAAGCTCCAACCGACGAAAATTCTTCCATTCCGAGCAATATGGAGGAGCAATCAGAGAAGCAATCACAGATAGATGAAAAGCTAGAGAGGCAGAAGCAAATTGATGCTTGGCTTCCAATCACTTCCTCAAGGAATGCAAACTGGTGGCACTCAGCTTTCCATAACGTCAACTCCATGGTTGGAGTTGGTGTCCTAAGTCTTCCTTATGCCATGTCGAATCTAGGATGGGGTCCTGGTGTAGTTGCTTTAGTACTATCATGGGTCATCACTTTATTCACATTATGGCAAATGGTTGAGATGCATGAAATGGTACCTGGAAAGCGATTCGATAGGTACCATGAACTGGGTCAACATGCCTTTGGTGAAAAGCTTGGTCTGTGGATTGTGGTGCCTCAACAGCTGGTCTGCGAAGTTGGTGTGGACATTGTGTATATGGTCGCAGGAGGAACAACACTGCAGAAGGTGCATAGCATAGTTCGCAAAGGCAAGAACCCGATCAAACTCACCTACTTCATCATGATCTATGCCTCGGCTCAGTTTGTACTTGCACATCTCCCCAACTTTGGCTCCATTTCCGGCGTGTCCTTGACTGCAGCAGTCATGTGTTTAAGTTACTCTACTATCGCATGGACAGCTTCCATACATAAGGGTGTTCAGGCAGATGTAGAATATGGGTATACAGCTCATAACGCATCGGGAACAGTTTTCAACTTCTTGACTGCCTTGGGAAACGTTGCGTTTGCCTATGCCGGCCATAATGTGGTTTTGGAGATCCAAGCAACAGTCCCTTCTTCACCTGACAAGCCATCCAAGAAGCCTATGTGGAGAGGGGTGCTCATAGCCTATACAGTGGTCGCTTTGTGCTATTTCCCGGTGGCCCTCATCGGATTTTATACTTTCGGCAATAAAGTCGAGGACAACATCCTAATCTCCTTGGAGAAACCTTCATGGCTCATCATTACGGCCAACATGTTCGTAGTTATTCATATTATTGGAGGTTATCAGCTATTTGCAATGCCAGTATTTGACATGATAGAAACCGTCCTGGTAAAGAAACTGCATTTTAGGCCTACAAGAACTCTTCGCTTCATTTCGAGGAATGTATATGTTGCACTCACAATGTTCGTGGGCATCAGTTTTCCCTTCTTTGGCGGACTTCTGGGATTCTTTGGAGGATTTGCTTTTTCGCCAACAACATACTTTCTCCCTTGCGTTATCTGGCTAGCCATAAGGAAGCCACGGAAGTTTAGCTTATCTTGGTTCATTAACTGGATTTGCATTACACTGGGTGTCCTGCTCATGATCCTATCACCTATTGGAGGGTTCAGGAATATAATACTTAAAGCAAAGGACTACCATTTCTACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

459

Amino Acids

51.34

Weight (kDa)

9.1

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 48 - 443 6.1e-106 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 60 - 219 2.1e-07 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 319, 342
AccB1I GGYRCC 3 cut(s) 319, 342, 397
AccB7I CCANNNNNTGG 2 cut(s) 352, 769
AccI GTMKAC 1 cut(s) 686
AciI CCGC 1 cut(s) 1161
AclI AACGTT 1 cut(s) 741
AclWI GGATC 2 cut(s) 775, 1306
AcoI YGGCCR 2 cut(s) 760, 972
AcsI RAATTY 1 cut(s) 28
AdeI CACNNNGTG 1 cut(s) 1298
AfaI GTAC 4 cut(s) 261, 321, 344, 552
AfiI CCNNNNNNNGG 5 cut(s) 352, 572, 769, 1157, 1328
AflIII ACRYGT 1 cut(s) 978
AgsI TTSAA 1 cut(s) 718
AjnI CCWGG 3 cut(s) 241, 322, 1053
AloI GAACNNNNNNTCC 1 cut(s) 30
AluBI AGCT 9 cut(s) 14, 91, 164, 379, 409, 644, 692, 1015, 1260
AluI AGCT 9 cut(s) 14, 91, 164, 379, 409, 644, 692, 1015, 1260
Alw21I GWGCWC 1 cut(s) 846
AlwI GGATC 2 cut(s) 775, 1306
AoxI GGCC 4 cut(s) 760, 885, 972, 1076
ApeKI GCWGC 1 cut(s) 602
ApoI RAATTY 1 cut(s) 28
Asp718I GGTACC 2 cut(s) 319, 342
AspS9I GGNCC 2 cut(s) 239, 886
AsuC2I CCSGG 1 cut(s) 881
AsuHPI GGTGA 4 cut(s) 383, 505, 795, 1311
AsuNHI GCTAGC 1 cut(s) 1231
AvaII GGWCC 1 cut(s) 239
BanI GGYRCC 3 cut(s) 319, 342, 397
BbsI GAAGAC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 846
BbvI GCAGC 1 cut(s) 614
BccI CCATC 2 cut(s) 228, 823
BceAI ACGGC 1 cut(s) 987
BcgI CGANNNNNNTGC 2 cut(s) 901, 935
BciT130I CCWGG 3 cut(s) 243, 324, 1055
BcnI CCSGG 1 cut(s) 881
BfaI CTAG 3 cut(s) 92, 230, 1232
BfmI CTRYAG 2 cut(s) 464, 600
BisI GCNGC 1 cut(s) 603
BlsI GCNGC 1 cut(s) 604
BmcAI AGTACT 1 cut(s) 261
Bme1390I CCNGG 4 cut(s) 243, 324, 881, 1055
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 239, 886
BmiI GGNNCC 5 cut(s) 240, 321, 344, 399, 577
BmrFI CCNGG 4 cut(s) 243, 324, 881, 1055
BmrI ACTGGG 2 cut(s) 362, 1304
BmsI GCATC 4 cut(s) 103, 297, 710, 1149
BmtI GCTAGC 1 cut(s) 1235
BmuI ACTGGG 2 cut(s) 362, 1304
BpiI GAAGAC 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 828, 860
BpuEI CTTGAG 1 cut(s) 121
BpuMI CCSGG 1 cut(s) 881
BsaJI CCNNGG 5 cut(s) 183, 537, 732, 942, 1247
BsaXI ACNNNNNCTCC 7 cut(s) 28, 164, 183, 194, 213, 560, 590
Bsc4I CCNNNNNNNGG 5 cut(s) 352, 572, 769, 1157, 1328
Bse118I RCCGGY 1 cut(s) 758
Bse1I ACTGG 5 cut(s) 155, 357, 1028, 1283, 1299
Bse3DI GCAATG 1 cut(s) 1029
BseBI CCWGG 3 cut(s) 243, 324, 1055
BseDI CCNNGG 5 cut(s) 183, 537, 732, 942, 1247
BseGI GGATG 3 cut(s) 239, 815, 930
BseLI CCNNNNNNNGG 5 cut(s) 352, 572, 769, 1157, 1328
BseMI GCAATG 1 cut(s) 1029
BseMII CTCAG 2 cut(s) 174, 557
BseNI ACTGG 5 cut(s) 155, 357, 1028, 1283, 1299
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 614
BshFI GGCC 4 cut(s) 762, 887, 974, 1078
BshNI GGYRCC 3 cut(s) 319, 342, 397
BsiHKAI GWGCWC 1 cut(s) 846
BsiSI CCGG 3 cut(s) 585, 759, 881
BslFI GGGAC 1 cut(s) 779
BslI CCNNNNNNNGG 5 cut(s) 352, 572, 769, 1157, 1328
BsmFI GGGAC 1 cut(s) 779
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 4 cut(s) 762, 887, 974, 1078
Bsp1286I GDGCHC 1 cut(s) 846
Bsp143I GATC 4 cut(s) 504, 528, 780, 1311
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 1 cut(s) 1161
BspANI GGCC 4 cut(s) 762, 887, 974, 1078
BspCNI CTCAG 2 cut(s) 173, 556
BspHI TCATGA 2 cut(s) 525, 1308
BspLI GGNNCC 5 cut(s) 240, 321, 344, 399, 577
BspMAI CTGCAG 2 cut(s) 468, 604
BspOI GCTAGC 1 cut(s) 1235
BspPI GGATC 2 cut(s) 775, 1306
BspT107I GGYRCC 3 cut(s) 319, 342, 397
BsrDI GCAATG 1 cut(s) 1029
BsrFI RCCGGY 1 cut(s) 758
BsrI ACTGG 5 cut(s) 155, 357, 1028, 1283, 1299
BssAI RCCGGY 1 cut(s) 758
BssECI CCNNGG 5 cut(s) 183, 537, 732, 942, 1247
BssMI GATC 4 cut(s) 504, 528, 780, 1311
BssNAI GTATAC 1 cut(s) 687
BssT1I CCWWGG 3 cut(s) 183, 732, 942
Bst1107I GTATAC 1 cut(s) 687
Bst2UI CCWGG 3 cut(s) 243, 324, 1055
Bst4CI ACNGT 4 cut(s) 712, 793, 859, 1051
Bst6I CTCTTC 1 cut(s) 1095
BstAPI GCANNNNNTGC 1 cut(s) 472
BstC8I GCNNGC 2 cut(s) 760, 1233
BstDEI CTNAG 3 cut(s) 160, 203, 543
BstDSI CCRYGG 2 cut(s) 183, 1247
BstENI CCTNNNNNAGG 1 cut(s) 1326
BstF5I GGATG 3 cut(s) 239, 815, 930
BstKTI GATC 4 cut(s) 507, 531, 783, 1314
BstMBI GATC 4 cut(s) 504, 528, 780, 1311
BstMWI GCNNNNNNNGC 7 cut(s) 97, 406, 472, 486, 641, 698, 1075
BstNI CCWGG 3 cut(s) 243, 324, 1055
BstNSI RCATGY 2 cut(s) 365, 982
BstSCI CCNGG 4 cut(s) 241, 322, 879, 1053
BstSFI CTRYAG 2 cut(s) 464, 600
BstV1I GCAGC 1 cut(s) 614
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 780
BstYI RGATCY 1 cut(s) 780
BstZ17I GTATAC 1 cut(s) 687
BsuRI GGCC 4 cut(s) 762, 887, 974, 1078
BtgI CCRYGG 2 cut(s) 183, 1247
BtsCI GGATG 3 cut(s) 239, 815, 930
BtsI GCAGTG 1 cut(s) 461
BtsIMutI CAGTG 3 cut(s) 461, 864, 1292
Cac8I GCNNGC 2 cut(s) 760, 1233
CciI TCATGA 2 cut(s) 525, 1308
Cfr10I RCCGGY 1 cut(s) 758
Cfr13I GGNCC 2 cut(s) 239, 886
Csp6I GTAC 4 cut(s) 260, 320, 343, 551
CspCI CAANNNNNGTGG 2 cut(s) 1116, 1151
CviQI GTAC 4 cut(s) 260, 320, 343, 551
DdeI CTNAG 3 cut(s) 160, 203, 543
DpnI GATC 4 cut(s) 506, 530, 782, 1313
DpnII GATC 4 cut(s) 504, 528, 780, 1311
DraIII CACNNNGTG 1 cut(s) 1298
EaeI YGGCCR 2 cut(s) 760, 972
Eam1104I CTCTTC 1 cut(s) 1095
EarI CTCTTC 1 cut(s) 1095
EciI GGCGGA 1 cut(s) 1176
Eco130I CCWWGG 3 cut(s) 183, 732, 942
Eco147I AGGCCT 1 cut(s) 1078
Eco47I GGWCC 1 cut(s) 239
EcoNI CCTNNNNNAGG 1 cut(s) 1326
EcoO109I RGGNCCY 1 cut(s) 239
EcoRII CCWGG 3 cut(s) 241, 322, 1053
EcoT14I CCWWGG 3 cut(s) 183, 732, 942
EcoT22I ATGCAT 1 cut(s) 312
ErhI CCWWGG 3 cut(s) 183, 732, 942
FalI AAGNNNNNCTT 4 cut(s) 196, 228, 1244, 1276
FaqI GGGAC 1 cut(s) 779
FblI GTMKAC 1 cut(s) 686
Fnu4HI GCNGC 1 cut(s) 603
FokI GGATG 3 cut(s) 246, 802, 917
Fsp4HI GCNGC 1 cut(s) 603
FspBI CTAG 3 cut(s) 92, 230, 1232
GluI GCNGC 1 cut(s) 603
HaeIII GGCC 4 cut(s) 762, 887, 974, 1078
HapII CCGG 3 cut(s) 585, 759, 881
HincII GTYRAC 2 cut(s) 178, 359
HindII GTYRAC 2 cut(s) 178, 359
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 3 cut(s) 226, 333, 1173
HpaII CCGG 3 cut(s) 585, 759, 881
HphI GGTGA 4 cut(s) 383, 505, 795, 1311
Hpy166II GTNNAC 4 cut(s) 178, 359, 430, 687
Hpy188I TCNGA 3 cut(s) 42, 64, 896
Hpy188III TCNNGA 5 cut(s) 526, 705, 724, 1309, 1336
Hpy8I GTNNAC 4 cut(s) 178, 359, 430, 687
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 4 cut(s) 463, 807, 963, 1162
HpyCH4III ACNGT 4 cut(s) 712, 793, 859, 1051
HpyCH4IV ACGT 2 cut(s) 174, 741
HpyF10VI GCNNNNNNNGC 7 cut(s) 97, 406, 472, 486, 641, 698, 1075
HpyF3I CTNAG 3 cut(s) 160, 203, 543
HpySE526I ACGT 2 cut(s) 174, 741
KpnI GGTACC 2 cut(s) 323, 346
KroI GCCGGC 1 cut(s) 758
KroNI GCCGGC 1 cut(s) 760
Kzo9I GATC 4 cut(s) 504, 528, 780, 1311
LmnI GCTCC 3 cut(s) 19, 55, 581
Lsp1109I GCAGC 1 cut(s) 614
LweI GCATC 4 cut(s) 103, 297, 710, 1149
MaeI CTAG 3 cut(s) 92, 230, 1232
MaeII ACGT 2 cut(s) 174, 741
MaeIII GTNAC 1 cut(s) 620
MalI GATC 4 cut(s) 506, 530, 782, 1313
MboI GATC 4 cut(s) 504, 528, 780, 1311
MboII GAAGA 4 cut(s) 24, 200, 792, 1082
MflI RGATCY 1 cut(s) 780
MhlI GDGCHC 1 cut(s) 846
MluCI AATT 3 cut(s) 28, 108, 1375
MmeI TCCRAC 2 cut(s) 41, 169
Mph1103I ATGCAT 1 cut(s) 312
MroNI GCCGGC 1 cut(s) 758
MseI TTAA 4 cut(s) 617, 1275, 1350, 1378
MslI CAYNNNNRTG 1 cut(s) 657
MspA1I CMGCKG 1 cut(s) 409
MspI CCGG 3 cut(s) 585, 759, 881
MspR9I CCNGG 4 cut(s) 243, 324, 881, 1055
Mva1269I GAATGC 1 cut(s) 148
MvaI CCWGG 3 cut(s) 243, 324, 1055
MwoI GCNNNNNNNGC 7 cut(s) 97, 406, 472, 486, 641, 698, 1075
NaeI GCCGGC 1 cut(s) 760
NciI CCSGG 1 cut(s) 881
NcoI CCATGG 1 cut(s) 183
NdeII GATC 4 cut(s) 504, 528, 780, 1311
NgoMIV GCCGGC 1 cut(s) 758
NheI GCTAGC 1 cut(s) 1231
NlaIV GGNNCC 5 cut(s) 240, 321, 344, 399, 577
NmeAIII GCCGAG 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 312
NspI RCATGY 2 cut(s) 365, 982
PagI TCATGA 2 cut(s) 525, 1308
PceI AGGCCT 1 cut(s) 1078
PciI ACATGT 1 cut(s) 978
PctI GAATGC 1 cut(s) 148
PdiI GCCGGC 1 cut(s) 760
PfeI GAWTC 3 cut(s) 226, 333, 1173
PflMI CCANNNNNTGG 2 cut(s) 352, 769
PkrI GCNGC 1 cut(s) 604
PpuMI RGGWCCY 1 cut(s) 239
PscI ACATGT 1 cut(s) 978
Psp1406I AACGTT 1 cut(s) 741
Psp5II RGGWCCY 1 cut(s) 239
Psp6I CCWGG 3 cut(s) 241, 322, 1053
PspGI CCWGG 3 cut(s) 241, 322, 1053
PspN4I GGNNCC 5 cut(s) 240, 321, 344, 399, 577
PspPI GGNCC 2 cut(s) 239, 886
PspPPI RGGWCCY 1 cut(s) 239
PstI CTGCAG 2 cut(s) 468, 604
PsuI RGATCY 1 cut(s) 780
PvuII CAGCTG 1 cut(s) 409
RsaI GTAC 4 cut(s) 261, 321, 344, 552
RsaNI GTAC 4 cut(s) 260, 320, 343, 551
RseI CAYNNNNRTG 1 cut(s) 657
SaqAI TTAA 4 cut(s) 617, 1275, 1350, 1378
SatI GCNGC 1 cut(s) 603
Sau3AI GATC 4 cut(s) 504, 528, 780, 1311
Sau96I GGNCC 2 cut(s) 239, 886
ScaI AGTACT 1 cut(s) 261
ScrFI CCNGG 4 cut(s) 243, 324, 881, 1055
SduI GDGCHC 1 cut(s) 846
SfaNI GCATC 4 cut(s) 103, 297, 710, 1149
SfcI CTRYAG 2 cut(s) 464, 600
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 2 cut(s) 9, 136
SmoI CTYRAG 2 cut(s) 9, 136
Sse9I AATT 3 cut(s) 28, 108, 1375
SseBI AGGCCT 1 cut(s) 1078
SsiI CCGC 1 cut(s) 1161
SspMI CTAG 3 cut(s) 92, 230, 1232
StuI AGGCCT 1 cut(s) 1078
StyD4I CCNGG 4 cut(s) 241, 322, 879, 1053
StyI CCWWGG 3 cut(s) 183, 732, 942
TaaI ACNGT 4 cut(s) 712, 793, 859, 1051
TaiI ACGT 2 cut(s) 177, 744
TaqI TCGA 4 cut(s) 224, 336, 921, 1103
TasI AATT 3 cut(s) 28, 108, 1375
TatI WGTACW 2 cut(s) 259, 550
TfiI GAWTC 3 cut(s) 226, 333, 1173
Tru1I TTAA 4 cut(s) 617, 1275, 1350, 1378
Tru9I TTAA 4 cut(s) 617, 1275, 1350, 1378
TscAI CASTG 3 cut(s) 468, 864, 1299
TseI GCWGC 1 cut(s) 602
TspDTI ATGAA 8 cut(s) 99, 327, 363, 511, 945, 983, 1087, 1261
TspGWI ACGGA 1 cut(s) 1264
TspRI CASTG 3 cut(s) 468, 864, 1299
Van91I CCANNNNNTGG 2 cut(s) 352, 769
VpaK11BI GGWCC 1 cut(s) 239
XagI CCTNNNNNAGG 1 cut(s) 1326
XapI RAATTY 1 cut(s) 28
XceI RCATGY 2 cut(s) 365, 982
XmiI GTMKAC 1 cut(s) 686
XspI CTAG 3 cut(s) 92, 230, 1232
ZrmI AGTACT 1 cut(s) 261
Zsp2I ATGCAT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.