Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008192

Physical Location & Seq

Genomic Coordinates Forward (+)

81731312 .. 81733361

Gene Structure 2050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G053990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGAGGAGCAATCAGAGAAGCAATCACAGATAGATGAAAAGCTAGAGAGGCAGAAGCAAATTGATGCTTGGCTTCCAATCACTTCCTCAAGGAATGCAAACTGGTGGCACACAGCTTTCCATAACGTCAACTCCATGGTTGGAGTTGGTGTCCTAAGTCTTCCTTATGCCATGTCGAATCTAGGATGGGGTCCTGGTGTAGTTGCTTTAGTACTATCATGGGTCATCACTTTATTCACATTATGGCAAATGGTTGAGATGCATGAAATGGTACCTGGAAAGCGATTCGATAGGTACCATGAACTGGGTCAACATGCCTTTGGTGAAAAGCTTGGTCTGTGGATTGTGGTGCCTCAACAGCTGGTCTGCGAAGTTGGTGTGGACATTGTGTATATGGTCGCAGGAGGAACAACACTGCAGAAGGTGCATAGCATAGTTCGCAAAGGCAAGAACCCGATCAAACTCACCTACTTCATCATGATCTATGCCTCGGCTCAGTTTGTACTCGCACATCTCCCCAACTTTGGCTCCATTTCCGGCGTGTCCTTGACTGCAGCAGTCATGTGTTTAAGTTACTCTACTATCGCATGGACGGCTTCCGTACATAAGGGTGTTCAGGCAGATGTAGAATATGGGTATACAGCTCATAACGCATCGGGAACAGTTTTCAACTTCTTGACTGCCTTGGGAAACGTTGCGTTTGCCTATGCCGGCCATAATGTGGTTTTGGAGATCCAAGCAACAGTCCCTTCTTCACCTGACAAGCCATCCAAGAAGCCTATGTGGAGAGGGGTGCTCATAGCCTATACAGTGGTCGCTTTGTGCTATTTCCCGGTGGCCCTCATCGGATTTTATACTTTCGGCAATAAAGTCGAGGACAACATCCTAATCTCCTTGGAGAAACCTTCATGGCTCATCATTACGGCCAACATGTTTGTAGTTATTCATATTATTGGAGGTTATCAGCTATTTGCAATGCCAGTATTTGACATGATAGAAACCGTCCTGGTAAAGAAACTGCATTTTAGGCCTACAAGAACTCTTCGCTTCATTTCGAGGAATGTATATGTTGCACTCACAATGTTCGTGGGCATCAGTTTTCCCTTCTTTGGTGGACTTCTGGGATTCTTTGGAGGATTTGCTTTTTCGCCAACAACATACTTTCTCCCTTGCGTTATCTGGCTAGCCATAAGGAAGCCACGGAAGTTTAGCTTATCTTGGTTCATTAACTGGATTTGCATTACACTGGGTGTCCTGCTCATGATCCTATCACCTATTGGAGGGTTCAGGAATATAATACTTAAAGCAAAGGACTACCATTTCTACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

443

Amino Acids

49.71

Weight (kDa)

9.25

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	32 - 427	3.4e-106	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	45 - 202	2e-07	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52900
malus_domestica	MD09G1016300.v1.1 MD17G1016900.v1.1
prunus_persica	Prupe.3G301000_v2.0.a1 Prupe.3G301000_v2.0.a1 Prupe.3G301100_v2.0.a1
pyrus_communis	pycom111g01320 pycom111g01330
rosa_chinensis	RchiOBHm_Chr2g0174601 RchiOBHm_Chr2g0174611
rosa_laevigata	RLG00000022275 RLG00000022276
rosa_multiflora	Rmu_sc0003649.1_g000003
rosa_roxburghii	Rroxscaffold_2G00078010 Rroxscaffold_2G00078020
rosa_rugosa	Rorug02G0578000 Rorug02G0578000 Rorug02G0578000
rosa_samantha	Rh2BG669900 Rh2CG633200 Rh2DG683800
rosa_wichuraiana	Rw2G053980 Rw2G053990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	271, 294
AccB1I	GGYRCC	3 cut(s)	271, 294, 349
AccB7I	CCANNNNNTGG	2 cut(s)	304, 721
AccI	GTMKAC	1 cut(s)	638
AclI	AACGTT	1 cut(s)	693
AclWI	GGATC	2 cut(s)	727, 1258
AcoI	YGGCCR	2 cut(s)	712, 924
AdeI	CACNNNGTG	1 cut(s)	1250
AfaI	GTAC	5 cut(s)	213, 273, 296, 504, 603
AfiI	CCNNNNNNNGG	5 cut(s)	304, 524, 721, 1109, 1280
AflIII	ACRYGT	1 cut(s)	930
AgsI	TTSAA	1 cut(s)	670
AjnI	CCWGG	3 cut(s)	193, 274, 1005
AluBI	AGCT	7 cut(s)	43, 116, 331, 361, 644, 967, 1212
AluI	AGCT	7 cut(s)	43, 116, 331, 361, 644, 967, 1212
Alw21I	GWGCWC	1 cut(s)	798
AlwI	GGATC	2 cut(s)	727, 1258
AoxI	GGCC	4 cut(s)	712, 837, 924, 1028
ApeKI	GCWGC	1 cut(s)	554
Asp718I	GGTACC	2 cut(s)	271, 294
AspS9I	GGNCC	2 cut(s)	191, 838
AsuC2I	CCSGG	1 cut(s)	833
AsuHPI	GGTGA	4 cut(s)	335, 457, 747, 1263
AsuNHI	GCTAGC	1 cut(s)	1183
AvaII	GGWCC	1 cut(s)	191
BanI	GGYRCC	3 cut(s)	271, 294, 349
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	798
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	2 cut(s)	180, 775
BceAI	ACGGC	2 cut(s)	609, 939
BcgI	CGANNNNNNTGC	2 cut(s)	853, 887
BciT130I	CCWGG	3 cut(s)	195, 276, 1007
BcnI	CCSGG	1 cut(s)	833
BfaI	CTAG	3 cut(s)	44, 182, 1184
BfmI	CTRYAG	2 cut(s)	416, 552
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
BmcAI	AGTACT	1 cut(s)	213
Bme1390I	CCNGG	4 cut(s)	195, 276, 833, 1007
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	191, 838
BmiI	GGNNCC	5 cut(s)	192, 273, 296, 351, 529
BmrFI	CCNGG	4 cut(s)	195, 276, 833, 1007
BmrI	ACTGGG	2 cut(s)	314, 1256
BmsI	GCATC	4 cut(s)	55, 249, 662, 1101
BmtI	GCTAGC	1 cut(s)	1187
BmuI	ACTGGG	2 cut(s)	314, 1256
BpiI	GAAGAC	1 cut(s)	152
BplI	GAGNNNNNCTC	2 cut(s)	780, 812
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	833
BsaJI	CCNNGG	5 cut(s)	135, 489, 684, 894, 1199
BsaXI	ACNNNNNCTCC	6 cut(s)	116, 135, 146, 165, 512, 542
Bsc4I	CCNNNNNNNGG	5 cut(s)	304, 524, 721, 1109, 1280
Bse118I	RCCGGY	1 cut(s)	710
Bse1I	ACTGG	5 cut(s)	107, 309, 980, 1235, 1251
Bse3DI	GCAATG	1 cut(s)	981
BseBI	CCWGG	3 cut(s)	195, 276, 1007
BseDI	CCNNGG	5 cut(s)	135, 489, 684, 894, 1199
BseGI	GGATG	3 cut(s)	191, 767, 882
BseLI	CCNNNNNNNGG	5 cut(s)	304, 524, 721, 1109, 1280
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	1 cut(s)	509
BseNI	ACTGG	5 cut(s)	107, 309, 980, 1235, 1251
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	566
BshFI	GGCC	4 cut(s)	714, 839, 926, 1030
BshNI	GGYRCC	3 cut(s)	271, 294, 349
BsiHKAI	GWGCWC	1 cut(s)	798
BsiSI	CCGG	3 cut(s)	537, 711, 833
BslFI	GGGAC	1 cut(s)	731
BslI	CCNNNNNNNGG	5 cut(s)	304, 524, 721, 1109, 1280
BsmFI	GGGAC	1 cut(s)	731
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	4 cut(s)	714, 839, 926, 1030
Bsp1286I	GDGCHC	1 cut(s)	798
Bsp143I	GATC	4 cut(s)	456, 480, 732, 1263
Bsp19I	CCATGG	1 cut(s)	135
BspANI	GGCC	4 cut(s)	714, 839, 926, 1030
BspCNI	CTCAG	1 cut(s)	508
BspHI	TCATGA	2 cut(s)	477, 1260
BspLI	GGNNCC	5 cut(s)	192, 273, 296, 351, 529
BspMAI	CTGCAG	2 cut(s)	420, 556
BspOI	GCTAGC	1 cut(s)	1187
BspPI	GGATC	2 cut(s)	727, 1258
BspT107I	GGYRCC	3 cut(s)	271, 294, 349
BsrDI	GCAATG	1 cut(s)	981
BsrFI	RCCGGY	1 cut(s)	710
BsrI	ACTGG	5 cut(s)	107, 309, 980, 1235, 1251
BssAI	RCCGGY	1 cut(s)	710
BssECI	CCNNGG	5 cut(s)	135, 489, 684, 894, 1199
BssMI	GATC	4 cut(s)	456, 480, 732, 1263
BssNAI	GTATAC	1 cut(s)	639
BssT1I	CCWWGG	3 cut(s)	135, 684, 894
Bst1107I	GTATAC	1 cut(s)	639
Bst2UI	CCWGG	3 cut(s)	195, 276, 1007
Bst4CI	ACNGT	4 cut(s)	664, 745, 811, 1003
Bst6I	CTCTTC	1 cut(s)	1047
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstC8I	GCNNGC	2 cut(s)	712, 1185
BstDEI	CTNAG	2 cut(s)	155, 495
BstDSI	CCRYGG	2 cut(s)	135, 1199
BstENI	CCTNNNNNAGG	1 cut(s)	1278
BstF5I	GGATG	3 cut(s)	191, 767, 882
BstKTI	GATC	4 cut(s)	459, 483, 735, 1266
BstMBI	GATC	4 cut(s)	456, 480, 732, 1263
BstMWI	GCNNNNNNNGC	7 cut(s)	49, 358, 424, 438, 593, 650, 1027
BstNI	CCWGG	3 cut(s)	195, 276, 1007
BstNSI	RCATGY	2 cut(s)	317, 934
BstSCI	CCNGG	4 cut(s)	193, 274, 831, 1005
BstSFI	CTRYAG	2 cut(s)	416, 552
BstV1I	GCAGC	1 cut(s)	566
BstV2I	GAAGAC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	732
BstYI	RGATCY	1 cut(s)	732
BstZ17I	GTATAC	1 cut(s)	639
BsuRI	GGCC	4 cut(s)	714, 839, 926, 1030
BtgI	CCRYGG	2 cut(s)	135, 1199
BtsCI	GGATG	3 cut(s)	191, 767, 882
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	3 cut(s)	413, 816, 1244
Cac8I	GCNNGC	2 cut(s)	712, 1185
CciI	TCATGA	2 cut(s)	477, 1260
Cfr10I	RCCGGY	1 cut(s)	710
Cfr13I	GGNCC	2 cut(s)	191, 838
Csp6I	GTAC	5 cut(s)	212, 272, 295, 503, 602
CspCI	CAANNNNNGTGG	2 cut(s)	1068, 1103
CviQI	GTAC	5 cut(s)	212, 272, 295, 503, 602
DdeI	CTNAG	2 cut(s)	155, 495
DpnI	GATC	4 cut(s)	458, 482, 734, 1265
DpnII	GATC	4 cut(s)	456, 480, 732, 1263
DraIII	CACNNNGTG	1 cut(s)	1250
EaeI	YGGCCR	2 cut(s)	712, 924
Eam1104I	CTCTTC	1 cut(s)	1047
EarI	CTCTTC	1 cut(s)	1047
Eco130I	CCWWGG	3 cut(s)	135, 684, 894
Eco147I	AGGCCT	1 cut(s)	1030
Eco47I	GGWCC	1 cut(s)	191
EcoNI	CCTNNNNNAGG	1 cut(s)	1278
EcoO109I	RGGNCCY	1 cut(s)	191
EcoRII	CCWGG	3 cut(s)	193, 274, 1005
EcoT14I	CCWWGG	3 cut(s)	135, 684, 894
EcoT22I	ATGCAT	1 cut(s)	264
ErhI	CCWWGG	3 cut(s)	135, 684, 894
FalI	AAGNNNNNCTT	4 cut(s)	148, 180, 1196, 1228
FaqI	GGGAC	1 cut(s)	731
FblI	GTMKAC	1 cut(s)	638
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	3 cut(s)	198, 754, 869
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	3 cut(s)	44, 182, 1184
GluI	GCNGC	1 cut(s)	555
HaeIII	GGCC	4 cut(s)	714, 839, 926, 1030
HapII	CCGG	3 cut(s)	537, 711, 833
HincII	GTYRAC	2 cut(s)	130, 311
HindII	GTYRAC	2 cut(s)	130, 311
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	3 cut(s)	178, 285, 1125
HpaII	CCGG	3 cut(s)	537, 711, 833
HphI	GGTGA	4 cut(s)	335, 457, 747, 1263
Hpy166II	GTNNAC	5 cut(s)	130, 311, 382, 639, 1115
Hpy188I	TCNGA	2 cut(s)	16, 848
Hpy188III	TCNNGA	5 cut(s)	478, 657, 676, 1261, 1288
Hpy8I	GTNNAC	5 cut(s)	130, 311, 382, 639, 1115
HpyAV	CCTTC	4 cut(s)	415, 759, 915, 1114
HpyCH4III	ACNGT	4 cut(s)	664, 745, 811, 1003
HpyCH4IV	ACGT	2 cut(s)	126, 693
HpyCH4V	TGCA	9 cut(s)	98, 262, 418, 427, 554, 974, 1021, 1073, 1239
HpyF10VI	GCNNNNNNNGC	7 cut(s)	49, 358, 424, 438, 593, 650, 1027
HpyF3I	CTNAG	2 cut(s)	155, 495
HpySE526I	ACGT	2 cut(s)	126, 693
KpnI	GGTACC	2 cut(s)	275, 298
KroI	GCCGGC	1 cut(s)	710
KroNI	GCCGGC	1 cut(s)	712
Kzo9I	GATC	4 cut(s)	456, 480, 732, 1263
LmnI	GCTCC	2 cut(s)	7, 533
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	4 cut(s)	55, 249, 662, 1101
MaeI	CTAG	3 cut(s)	44, 182, 1184
MaeII	ACGT	2 cut(s)	126, 693
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	4 cut(s)	458, 482, 734, 1265
MboI	GATC	4 cut(s)	456, 480, 732, 1263
MboII	GAAGA	3 cut(s)	152, 744, 1034
MflI	RGATCY	1 cut(s)	732
MhlI	GDGCHC	1 cut(s)	798
MluCI	AATT	2 cut(s)	60, 1327
MmeI	TCCRAC	1 cut(s)	121
Mph1103I	ATGCAT	1 cut(s)	264
MroNI	GCCGGC	1 cut(s)	710
MseI	TTAA	4 cut(s)	569, 1227, 1302, 1330
MslI	CAYNNNNRTG	1 cut(s)	609
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	3 cut(s)	537, 711, 833
MspR9I	CCNGG	4 cut(s)	195, 276, 833, 1007
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	3 cut(s)	195, 276, 1007
MwoI	GCNNNNNNNGC	7 cut(s)	49, 358, 424, 438, 593, 650, 1027
NaeI	GCCGGC	1 cut(s)	712
NciI	CCSGG	1 cut(s)	833
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	4 cut(s)	456, 480, 732, 1263
NgoMIV	GCCGGC	1 cut(s)	710
NheI	GCTAGC	1 cut(s)	1183
NlaIV	GGNNCC	5 cut(s)	192, 273, 296, 351, 529
NmeAIII	GCCGAG	1 cut(s)	470
NsiI	ATGCAT	1 cut(s)	264
NspI	RCATGY	2 cut(s)	317, 934
PagI	TCATGA	2 cut(s)	477, 1260
PceI	AGGCCT	1 cut(s)	1030
PciI	ACATGT	1 cut(s)	930
PctI	GAATGC	1 cut(s)	100
PdiI	GCCGGC	1 cut(s)	712
PfeI	GAWTC	3 cut(s)	178, 285, 1125
PflMI	CCANNNNNTGG	2 cut(s)	304, 721
PkrI	GCNGC	1 cut(s)	556
PpuMI	RGGWCCY	1 cut(s)	191
PscI	ACATGT	1 cut(s)	930
Psp1406I	AACGTT	1 cut(s)	693
Psp5II	RGGWCCY	1 cut(s)	191
Psp6I	CCWGG	3 cut(s)	193, 274, 1005
PspGI	CCWGG	3 cut(s)	193, 274, 1005
PspN4I	GGNNCC	5 cut(s)	192, 273, 296, 351, 529
PspPI	GGNCC	2 cut(s)	191, 838
PspPPI	RGGWCCY	1 cut(s)	191
PstI	CTGCAG	2 cut(s)	420, 556
PsuI	RGATCY	1 cut(s)	732
PvuII	CAGCTG	1 cut(s)	361
RsaI	GTAC	5 cut(s)	213, 273, 296, 504, 603
RsaNI	GTAC	5 cut(s)	212, 272, 295, 503, 602
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	4 cut(s)	569, 1227, 1302, 1330
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	4 cut(s)	456, 480, 732, 1263
Sau96I	GGNCC	2 cut(s)	191, 838
ScaI	AGTACT	1 cut(s)	213
ScrFI	CCNGG	4 cut(s)	195, 276, 833, 1007
SduI	GDGCHC	1 cut(s)	798
SfaNI	GCATC	4 cut(s)	55, 249, 662, 1101
SfcI	CTRYAG	2 cut(s)	416, 552
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	2 cut(s)	60, 1327
SseBI	AGGCCT	1 cut(s)	1030
SspMI	CTAG	3 cut(s)	44, 182, 1184
StuI	AGGCCT	1 cut(s)	1030
StyD4I	CCNGG	4 cut(s)	193, 274, 831, 1005
StyI	CCWWGG	3 cut(s)	135, 684, 894
TaaI	ACNGT	4 cut(s)	664, 745, 811, 1003
TaiI	ACGT	2 cut(s)	129, 696
TaqI	TCGA	4 cut(s)	176, 288, 873, 1055
TasI	AATT	2 cut(s)	60, 1327
TatI	WGTACW	2 cut(s)	211, 502
TfiI	GAWTC	3 cut(s)	178, 285, 1125
Tru1I	TTAA	4 cut(s)	569, 1227, 1302, 1330
Tru9I	TTAA	4 cut(s)	569, 1227, 1302, 1330
TscAI	CASTG	3 cut(s)	420, 816, 1251
TseI	GCWGC	1 cut(s)	554
TspDTI	ATGAA	8 cut(s)	51, 279, 315, 463, 897, 935, 1039, 1213
TspGWI	ACGGA	2 cut(s)	589, 1216
TspRI	CASTG	3 cut(s)	420, 816, 1251
Van91I	CCANNNNNTGG	2 cut(s)	304, 721
VpaK11BI	GGWCC	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	1278
XceI	RCATGY	2 cut(s)	317, 934
XmiI	GTMKAC	1 cut(s)	638
XspI	CTAG	3 cut(s)	44, 182, 1184
ZrmI	AGTACT	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.