FvH4_7g00670

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006948
Physical Location & Seq
Forward (+)
1194526 .. 1197751
3226 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00670.t6

Sequence Viewer

Length: 1290 bp
ATGAGTAGCCTTTTATACAGTCCACAGTTCAAATCTTCAGAGGCAGAGTTGAGGAAGAGCCACACTGAATTCTTGGATTCATCAAATGGTTTCCAGCAACAACAGTCACAGCAGCAGCAGAGCTCTGGCCTAATGCGGTATCGGTCTGCTCCGAGCTCAGTCTTACTGGACCTTGTGGACAACAATGGTGGTGCTGGATGTGAGGATTTTCGAGATTTTCGATATCCTCGACCTTCCAGCCCCGAAGTGGAAACCGTCTTGGCAAGGTTCATTTCCTCATGTAATGCACCTGATGGTGACAATGGTTCCAATCATAGTGCGCATAATTTGTTCCAAGAAAGGCCTGTGAAGCAAGAAGCAGGGGACTCTGTTTCGAAACAGAATGGTTACTCAAATTCTCCTCAGATGATGTACCAGACTCAACAAGTTCATCCTTTGGATAATGCCTCCTCCTTTGGTGCGTTCAAATCTACCGGCTTGGAGAACTCGATGCAATCAAAAATGGGTGCTGCAAATCGCTCCAATCTTGTTAGGCAAAGTAGCTCTCCAGCTGGATTCTTCCCCAACTTAAACGTTGACAATGGCTTCAATCTGATGAAAGATGCTTCAAGTTTTGGAGTAAGCAATGGTACAAATGGAGAAGCTAGTCCATCAACTTCTAGGTTGAGTACCCAATTCAGTTTCTCCTCTGCATCACCTCCATACTCAACAGAGTCCAGACGTTTGCCTCGAATTGCTGAAATTGGGAATGGAAACATAGGAGAGGGTAGTGAACCAGATCAAAGCTTAGGGAATGCCGCTAATGGTGGCAGTTCACATTACATACCTGACTATATAGATAATACTTGGGACAATGTTGCATTTCATGATCTCAAAAGAGGCAGAGATAATGATGGGAACAAGTTTTCTACGACTGCAATGGACACTCAGATCGTGGATTTCGGACACCGCAGTCATGGTCTTACTCATCATTTGAGCTTGCCTAAACATTTTGAGATGCCTGGTATGGAGAAGCTTTTACATTTTCAAGATTCCGTTCCATGTAAAATTCGTGCGAAAAGAGGCTTCGCAACTCACCCAAGAAGCATTGCAGAGAGGATGAGAAGAACTCGGATCAGTGAAAGAATGAGGAAGCTGCAGGATCTTTTCCCAAACATGGACAAGCAAACGAACACGGCAGAAATGTTGGAGTTGGCAGTTGAGTACATTAAAGACCTGCAGAAAGAGGTGAAGACGCTCAAGGATACAAAGGCCAAGTGCAGTTGTTCAAGTAAACATAAACACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

430

Amino Acids

47.55

Weight (kDa)

8.19

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 362 - 407 3.6e-09 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 951
Acc16I TGCGCA 1 cut(s) 321
Acc36I ACCTGC 1 cut(s) 1224
AciI CCGC 3 cut(s) 136, 798, 949
AclI AACGTT 1 cut(s) 573
AclWI GGATC 2 cut(s) 1121, 1149
AcsI RAATTY 3 cut(s) 68, 394, 1047
AcuI CTGAAG 1 cut(s) 21
AfaI GTAC 4 cut(s) 413, 631, 670, 1205
AfiI CCNNNNNNNGG 2 cut(s) 247, 1156
AgsI TTSAA 6 cut(s) 31, 466, 589, 609, 1028, 1269
AjnI CCWGG 1 cut(s) 1000
AluBI AGCT 9 cut(s) 123, 156, 543, 551, 644, 786, 978, 1015, 1135
AluI AGCT 9 cut(s) 123, 156, 543, 551, 644, 786, 978, 1015, 1135
Alw21I GWGCWC 2 cut(s) 125, 158
AlwI GGATC 2 cut(s) 1121, 1149
AoxI GGCC 3 cut(s) 127, 341, 1251
ApeKI GCWGC 4 cut(s) 112, 115, 509, 1135
ApoI RAATTY 3 cut(s) 68, 394, 1047
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 4 cut(s) 308, 687, 1067, 1240
AsuII TTCGAA 1 cut(s) 374
AvaII GGWCC 1 cut(s) 169
BanII GRGCYC 2 cut(s) 125, 158
BbsI GAAGAC 1 cut(s) 1238
Bbv12I GWGCWC 2 cut(s) 125, 158
BbvI GCAGC 4 cut(s) 124, 127, 496, 1122
BccI CCATC 3 cut(s) 287, 658, 887
BceAI ACGGC 1 cut(s) 1191
BciT130I CCWGG 1 cut(s) 1002
BciVI GTATCC 1 cut(s) 1237
BfaI CTAG 2 cut(s) 645, 660
BfmI CTRYAG 2 cut(s) 1136, 1217
BfuAI ACCTGC 1 cut(s) 1224
BfuI GTATCC 1 cut(s) 1237
BisI GCNGC 5 cut(s) 113, 116, 510, 798, 1136
BlsI GCNGC 5 cut(s) 114, 117, 511, 799, 1137
Bme1390I CCNGG 1 cut(s) 1002
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 1 cut(s) 1002
BmsI GCATC 4 cut(s) 480, 592, 701, 987
BpiI GAAGAC 1 cut(s) 1238
BplI GAGNNNNNCTC 2 cut(s) 1093, 1125
BpmI CTGGAG 1 cut(s) 531
Bpu10I CCTNAGC 1 cut(s) 787
Bpu14I TTCGAA 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 1223
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 1156
Bse118I RCCGGY 1 cut(s) 473
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 3 cut(s) 631, 924, 1086
BseBI CCWGG 1 cut(s) 1002
BseGI GGATG 3 cut(s) 203, 430, 1104
BseLI CCNNNNNNNGG 2 cut(s) 247, 1156
BseMI GCAATG 3 cut(s) 631, 924, 1086
BseMII CTCAG 3 cut(s) 171, 416, 941
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 3 cut(s) 390, 439, 676
BseXI GCAGC 4 cut(s) 124, 127, 496, 1122
BsgI GTGCAG 1 cut(s) 1279
BshFI GGCC 3 cut(s) 129, 343, 1253
BsiHKAI GWGCWC 2 cut(s) 125, 158
BsiSI CCGG 1 cut(s) 474
BslFI GGGAC 2 cut(s) 377, 863
BslI CCNNNNNNNGG 2 cut(s) 247, 1156
BsmFI GGGAC 2 cut(s) 377, 863
BsmI GAATGC 1 cut(s) 799
BsnI GGCC 3 cut(s) 129, 343, 1253
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 2 cut(s) 125, 158
Bsp143I GATC 5 cut(s) 778, 868, 930, 1113, 1141
BspACI CCGC 3 cut(s) 136, 798, 949
BspANI GGCC 3 cut(s) 129, 343, 1253
BspCNI CTCAG 3 cut(s) 170, 415, 940
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 1 cut(s) 307
BspMAI CTGCAG 2 cut(s) 1140, 1221
BspMI ACCTGC 1 cut(s) 1224
BspPI GGATC 2 cut(s) 1121, 1149
BspQI GCTCTTC 1 cut(s) 50
BspT104I TTCGAA 1 cut(s) 374
BsrDI GCAATG 3 cut(s) 631, 924, 1086
BsrFI RCCGGY 1 cut(s) 473
BsrI ACTGG 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 473
BssMI GATC 5 cut(s) 778, 868, 930, 1113, 1141
Bst2UI CCWGG 1 cut(s) 1002
Bst4CI ACNGT 4 cut(s) 20, 27, 105, 256
Bst6I CTCTTC 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 980
BstDEI CTNAG 4 cut(s) 157, 402, 787, 927
BstF5I GGATG 3 cut(s) 203, 430, 1104
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 5 cut(s) 781, 871, 933, 1116, 1144
BstMBI GATC 5 cut(s) 778, 868, 930, 1113, 1141
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstNI CCWGG 1 cut(s) 1002
BstSCI CCNGG 1 cut(s) 1000
BstSFI CTRYAG 2 cut(s) 1136, 1217
BstV1I GCAGC 4 cut(s) 124, 127, 496, 1122
BstV2I GAAGAC 1 cut(s) 1238
BstX2I RGATCY 1 cut(s) 1141
BstYI RGATCY 1 cut(s) 1141
BsuI GTATCC 1 cut(s) 1237
BsuRI GGCC 3 cut(s) 129, 343, 1253
BtsCI GGATG 3 cut(s) 203, 430, 1104
BtsIMutI CAGTG 2 cut(s) 63, 1123
BveI ACCTGC 1 cut(s) 1224
Cac8I GCNNGC 1 cut(s) 980
CciI TCATGA 1 cut(s) 865
CfoI GCGC 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 473
Cfr13I GGNCC 1 cut(s) 169
CseI GACGC 1 cut(s) 1243
Csp6I GTAC 4 cut(s) 412, 630, 669, 1204
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviAII CATG 5 cut(s) 279, 866, 956, 1041, 1156
CviQI GTAC 4 cut(s) 412, 630, 669, 1204
DdeI CTNAG 4 cut(s) 157, 402, 787, 927
DpnI GATC 5 cut(s) 780, 870, 932, 1115, 1143
DpnII GATC 5 cut(s) 778, 868, 930, 1113, 1141
DrdI GACNNNNNNGTC 1 cut(s) 951
DseDI GACNNNNNNGTC 1 cut(s) 951
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Ecl136II GAGCTC 2 cut(s) 123, 156
Eco147I AGGCCT 1 cut(s) 343
Eco24I GRGCYC 2 cut(s) 125, 158
Eco32I GATATC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 169
Eco53kI GAGCTC 2 cut(s) 123, 156
Eco57I CTGAAG 1 cut(s) 21
EcoICRI GAGCTC 2 cut(s) 123, 156
EcoRI GAATTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 1000
EcoRV GATATC 1 cut(s) 224
EcoT38I GRGCYC 2 cut(s) 125, 158
FaeI CATG 5 cut(s) 282, 869, 959, 1044, 1159
FaqI GGGAC 2 cut(s) 377, 863
FatI CATG 5 cut(s) 278, 865, 955, 1040, 1155
Fnu4HI GCNGC 5 cut(s) 113, 116, 510, 798, 1136
FokI GGATG 3 cut(s) 210, 417, 1111
FriOI GRGCYC 2 cut(s) 125, 158
Fsp4HI GCNGC 5 cut(s) 113, 116, 510, 798, 1136
FspAI RTGCGCAY 1 cut(s) 321
FspBI CTAG 2 cut(s) 645, 660
FspI TGCGCA 1 cut(s) 321
GlaI GCGC 1 cut(s) 321
GluI GCNGC 5 cut(s) 113, 116, 510, 798, 1136
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 3 cut(s) 129, 343, 1253
HapII CCGG 1 cut(s) 474
HgaI GACGC 1 cut(s) 1243
HhaI GCGC 1 cut(s) 322
Hin1II CATG 5 cut(s) 282, 869, 959, 1044, 1159
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HindIII AAGCTT 2 cut(s) 784, 1013
HinfI GANTC 6 cut(s) 77, 365, 418, 555, 713, 1031
HpaII CCGG 1 cut(s) 474
HphI GGTGA 4 cut(s) 308, 687, 1067, 1240
Hpy166II GTNNAC 6 cut(s) 23, 178, 577, 773, 815, 1274
Hpy188I TCNGA 7 cut(s) 40, 153, 405, 594, 930, 944, 1113
Hpy188III TCNNGA 4 cut(s) 212, 717, 866, 1028
Hpy8I GTNNAC 6 cut(s) 23, 178, 577, 773, 815, 1274
HpyAV CCTTC 1 cut(s) 243
HpyCH4III ACNGT 4 cut(s) 20, 27, 105, 256
HpyCH4IV ACGT 2 cut(s) 573, 721
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 4 cut(s) 157, 402, 787, 927
HpySE526I ACGT 2 cut(s) 573, 721
Hsp92II CATG 5 cut(s) 282, 869, 959, 1044, 1159
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 5 cut(s) 778, 868, 930, 1113, 1141
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 2 cut(s) 154, 524
Lsp1109I GCAGC 4 cut(s) 124, 127, 496, 1122
LweI GCATC 4 cut(s) 480, 592, 701, 987
MaeI CTAG 2 cut(s) 645, 660
MaeII ACGT 2 cut(s) 573, 721
MaeIII GTNAC 3 cut(s) 105, 296, 386
MalI GATC 5 cut(s) 780, 870, 932, 1115, 1143
MboI GATC 5 cut(s) 778, 868, 930, 1113, 1141
MboII GAAGA 5 cut(s) 27, 67, 550, 1116, 1243
MfeI CAATTG 1 cut(s) 1285
MflI RGATCY 1 cut(s) 1141
MhlI GDGCHC 2 cut(s) 125, 158
MluCI AATT 8 cut(s) 68, 325, 394, 674, 732, 741, 1047, 1285
MlyI GAGTC 3 cut(s) 359, 412, 722
MmeI TCCRAC 1 cut(s) 1167
MseI TTAA 2 cut(s) 569, 1209
MspA1I CMGCKG 1 cut(s) 551
MspI CCGG 1 cut(s) 474
MspR9I CCNGG 1 cut(s) 1002
MunI CAATTG 1 cut(s) 1285
Mva1269I GAATGC 1 cut(s) 799
MvaI CCWGG 1 cut(s) 1002
MwoI GCNNNNNNNGC 1 cut(s) 349
NdeII GATC 5 cut(s) 778, 868, 930, 1113, 1141
NlaIII CATG 5 cut(s) 282, 869, 959, 1044, 1159
NlaIV GGNNCC 1 cut(s) 307
NmuCI GTSAC 2 cut(s) 105, 296
NsbI TGCGCA 1 cut(s) 321
NspV TTCGAA 1 cut(s) 374
PagI TCATGA 1 cut(s) 865
PceI AGGCCT 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 50
PcsI WCGNNNNNNNCGW 3 cut(s) 217, 226, 727
PctI GAATGC 1 cut(s) 799
PfeI GAWTC 3 cut(s) 77, 555, 1031
PkrI GCNGC 5 cut(s) 114, 117, 511, 799, 1137
PleI GAGTC 3 cut(s) 359, 412, 721
PpsI GAGTC 3 cut(s) 359, 412, 721
Psp124BI GAGCTC 2 cut(s) 125, 158
Psp1406I AACGTT 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 1000
PspGI CCWGG 1 cut(s) 1000
PspN4I GGNNCC 1 cut(s) 307
PspPI GGNCC 1 cut(s) 169
PstI CTGCAG 2 cut(s) 1140, 1221
PsuI RGATCY 1 cut(s) 1141
PvuII CAGCTG 1 cut(s) 551
RsaI GTAC 4 cut(s) 413, 631, 670, 1205
RsaNI GTAC 4 cut(s) 412, 630, 669, 1204
SacI GAGCTC 2 cut(s) 125, 158
SapI GCTCTTC 1 cut(s) 50
SaqAI TTAA 2 cut(s) 569, 1209
SatI GCNGC 5 cut(s) 113, 116, 510, 798, 1136
Sau3AI GATC 5 cut(s) 778, 868, 930, 1113, 1141
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 3 cut(s) 359, 412, 722
ScrFI CCNGG 1 cut(s) 1002
SduI GDGCHC 2 cut(s) 125, 158
SfaNI GCATC 4 cut(s) 480, 592, 701, 987
SfcI CTRYAG 2 cut(s) 1136, 1217
SfuI TTCGAA 1 cut(s) 374
SinI GGWCC 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 1238
SmoI CTYRAG 1 cut(s) 1238
Sse9I AATT 8 cut(s) 68, 325, 394, 674, 732, 741, 1047, 1285
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 3 cut(s) 136, 798, 949
SspMI CTAG 2 cut(s) 645, 660
SstI GAGCTC 2 cut(s) 125, 158
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 1 cut(s) 1000
TaaI ACNGT 4 cut(s) 20, 27, 105, 256
TaiI ACGT 2 cut(s) 576, 724
TaqI TCGA 6 cut(s) 211, 220, 229, 374, 488, 730
TaqII GACCGA 1 cut(s) 132
TasI AATT 8 cut(s) 68, 325, 394, 674, 732, 741, 1047, 1285
TatI WGTACW 1 cut(s) 1203
TauI GCSGC 1 cut(s) 800
TfiI GAWTC 3 cut(s) 77, 555, 1031
Tru1I TTAA 2 cut(s) 569, 1209
Tru9I TTAA 2 cut(s) 569, 1209
TscAI CASTG 2 cut(s) 70, 1123
TseFI GTSAC 2 cut(s) 105, 296
TseI GCWGC 4 cut(s) 112, 115, 509, 1135
Tsp45I GTSAC 2 cut(s) 105, 296
TspDTI ATGAA 5 cut(s) 69, 259, 419, 611, 854
TspGWI ACGGA 1 cut(s) 1024
TspRI CASTG 2 cut(s) 70, 1123
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 3 cut(s) 68, 394, 1047
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XspI CTAG 2 cut(s) 645, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.