Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006948

Physical Location & Seq

Genomic Coordinates Reverse (-)

480391 .. 482526

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g00510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGAGCAGTCTTTTATACAAATACAATCCTAATTTTAAGGCCTCAGAGGGAGAGCTGAGGAAGAACCACACTGCGGAGTTCATGGATTCGAATATTTTCCAGCAACAGCATCGTCAGCAGCAACAGCAGAGCTCCAGCTTAACGCGGTATCGGTCAGCTCCAAGCTCATTTCTGATGGAGCATATGGATAACAATGGCGGCGGCGGAGGAGTTGAGGATTTGCGGTATCTTCAACCGTCGAGCCCTGAAGTCGAAACGGTGCTAGCCAGATTCATTTCTTCATGTAATGAACCAGATCACCATGACAATGGCGTGCAGCATCATCAATTTGAAATCGAAGAGAGGCCGGTGAATGTGAAGGAAGAGGCAGGGGACTCTGTTTCTAATCACAATAATGGTTACCCGAATTCTACTCATATGATGTACCAAGCTCCTCAAGCTCAACAAGTTCATGGTTTAGATAGCAGCTCCTTTGCTGCAGTCAACTCTACCGTAATGGAGAATTCAATGATGCAATCGAAAATTGGGGTTGGAAATCGGTCTAATCTTGTTAGACAAAGTAGCTCTCCGGCTGGATTCTTCCCTAACTTGACCGTTGACAATGGCTTCAATGTGATGAAAGACTCGGCGGGATATCGCGCAGGCAATGGTGTAAGTGGAGAAGCCAGTCCATCAACTTCTAGGTTGGGTAATCAACTGAATTTCTCATCTAGGCCATCTTCATACTCACATCGTATGCCTCGGATTGCTGAAAATGAGAATGGGAACTCGGGAGAAGGTAGCCAACCGCAACCGAATCATGGTTTAGGAGATGCTAATGGTAGCAATTCACATTACCACTCTAGCTTTCCAAATGATTCATGGGAGAATTCTTCATTTAATGACCTCAAAAGAGCCAGGGACAATGACGGGAACAAGTTTTCTACTTCGATTGCATTCAAATCACAGAACAATGATTTGGGAAACCACAATCACGGTTTGACTCAACATTTGAGCTTGCCTAAACAATTTGAGATGCCTGCTATGGAGAAGTATTTGCAATTTGAAGATTCTATTCCTTGTAAAATTCGTGCCAAAAGAGGCTTCGCCACTCACCCGCGAAGCATCGCAGAGAGGATGAGAAGGATGCGGATTAGTGAAAGAATGAAGAAATTGCAGGATCTTTTCCCGGACATGGACAAGCAAATAAACACGGCAGAAATGTTGGACTTGGCGGTTGAGTTCATAAAAGACCTTCAGAAACAGGTTAAGACCCTCAAAGATACGAAGGCGAAGTGCAGTTGTTCGAGCAAACAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

434

Amino Acids

48.48

Weight (kDa)

7.32

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g00670 FvH4_7g00670 FvH4_7g00670 FvH4_7g00670 FvH4_7g00670 FvH4_7g00670 FvH4_7g00670 FvH4_7g00670 FvH4_7g00670
malus_domestica	MD02G1315600.v1.1 MD02G1315700.v1.1 MD07G1006400.v1.1
prunus_persica	Prupe.2G009100_v2.0.a1 Prupe.2G009100_v2.0.a1 Prupe.2G009100_v2.0.a1
pyrus_communis	pycom02g26450 pycom07g00510
rosa_chinensis	RchiOBHm_Chr1g0314891
rosa_laevigata	RLG00000030757
rosa_roxburghii	Rroxscaffold_4G00331700
rosa_rugosa	Rorug01G0002700
rosa_samantha	Rh1AG013700 Rh1BG005300 Rh1CG012000 Rh1DG007100
rosa_wichuraiana	Rw1G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	145, 639, 1099
AclWI	GGATC	1 cut(s)	1167
AcsI	RAATTY	5 cut(s)	406, 502, 700, 868, 1065
AcuI	CTGAAG	2 cut(s)	267, 1220
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	3 cut(s)	73, 800, 1174
AgsI	TTSAA	6 cut(s)	233, 332, 507, 610, 940, 1046
AjnI	CCWGG	1 cut(s)	896
AjuI	GAANNNNNNNTTGG	4 cut(s)	941, 973, 1067, 1099
Alw21I	GWGCWC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	1167
Ama87I	CYCGRG	1 cut(s)	769
AoxI	GGCC	3 cut(s)	39, 344, 713
ApeKI	GCWGC	4 cut(s)	118, 316, 465, 476
ApoI	RAATTY	5 cut(s)	406, 502, 700, 868, 1065
ArsI	GACNNNNNNTTYG	2 cut(s)	973, 1005
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	641
AsuC2I	CCSGG	1 cut(s)	1169
AsuHPI	GGTGA	3 cut(s)	290, 361, 1085
AsuII	TTCGAA	1 cut(s)	89
AsuNHI	GCTAGC	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	769
BanII	GRGCYC	2 cut(s)	134, 245
Bbv12I	GWGCWC	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	4 cut(s)	130, 328, 463, 477
BccI	CCATC	3 cut(s)	169, 679, 724
BceAI	ACGGC	1 cut(s)	1209
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	1 cut(s)	898
BcnI	CCSGG	1 cut(s)	1169
BfaI	CTAG	4 cut(s)	263, 681, 711, 843
BfmI	CTRYAG	1 cut(s)	477
BisI	GCNGC	6 cut(s)	119, 199, 202, 317, 466, 477
BlsI	GCNGC	6 cut(s)	120, 200, 203, 318, 467, 478
Bme1390I	CCNGG	2 cut(s)	898, 1169
BmeT110I	CYCGRG	1 cut(s)	769
BmrFI	CCNGG	2 cut(s)	898, 1169
BmsI	GCATC	7 cut(s)	118, 328, 501, 802, 1005, 1113, 1116
BmtI	GCTAGC	1 cut(s)	266
BpmI	CTGGAG	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	1169
BsaJI	CCNNGG	2 cut(s)	740, 897
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 800, 1174
Bse118I	RCCGGY	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	666
Bse3DI	GCAATG	1 cut(s)	652
BseBI	CCWGG	1 cut(s)	898
BseDI	CCNNGG	2 cut(s)	740, 897
BseGI	GGATG	2 cut(s)	1122, 1131
BseLI	CCNNNNNNNGG	3 cut(s)	73, 800, 1174
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	2 cut(s)	47, 57
BseNI	ACTGG	1 cut(s)	666
BseRI	GAGGAG	2 cut(s)	222, 423
BseXI	GCAGC	4 cut(s)	130, 328, 463, 477
BsgI	GTGCAG	2 cut(s)	335, 1297
Bsh1236I	CGCG	3 cut(s)	145, 639, 1099
BshFI	GGCC	3 cut(s)	41, 346, 715
BsiHKAI	GWGCWC	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	769
BsiSI	CCGG	3 cut(s)	347, 569, 1169
BslFI	GGGAC	2 cut(s)	386, 914
BslI	CCNNNNNNNGG	3 cut(s)	73, 800, 1174
BsmFI	GGGAC	2 cut(s)	386, 914
BsmI	GAATGC	1 cut(s)	935
BsnI	GGCC	3 cut(s)	41, 346, 715
BsoBI	CYCGRG	1 cut(s)	769
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	134, 245
Bsp143I	GATC	2 cut(s)	295, 1159
BspANI	GGCC	3 cut(s)	41, 346, 715
BspCNI	CTCAG	2 cut(s)	48, 56
BspFNI	CGCG	3 cut(s)	145, 639, 1099
BspMAI	CTGCAG	1 cut(s)	481
BspOI	GCTAGC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	1167
BspT104I	TTCGAA	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	652
BsrFI	RCCGGY	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	666
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	740, 897
BssMI	GATC	2 cut(s)	295, 1159
Bst2UI	CCWGG	1 cut(s)	898
Bst4CI	ACNGT	5 cut(s)	237, 259, 493, 595, 977
Bst6I	CTCTTC	2 cut(s)	333, 357
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	5 cut(s)	264, 314, 643, 998, 1020
BstDEI	CTNAG	2 cut(s)	43, 56
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	1122, 1131
BstFNI	CGCG	3 cut(s)	145, 639, 1099
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	2 cut(s)	298, 1162
BstMBI	GATC	2 cut(s)	295, 1159
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 124, 437
BstNI	CCWGG	1 cut(s)	898
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	896, 1167
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	3 cut(s)	145, 639, 1099
BstV1I	GCAGC	4 cut(s)	130, 328, 463, 477
BstX2I	RGATCY	1 cut(s)	1159
BstXI	CCANNNNNNTGG	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	1159
BsuRI	GGCC	3 cut(s)	41, 346, 715
BtgZI	GCGATG	1 cut(s)	1090
BtsCI	GGATG	2 cut(s)	1122, 1131
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	5 cut(s)	264, 314, 643, 998, 1020
CfoI	GCGC	1 cut(s)	641
Cfr10I	RCCGGY	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	7 cut(s)	82, 282, 302, 452, 800, 861, 1174
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	2 cut(s)	43, 56
DpnI	GATC	2 cut(s)	297, 1161
DpnII	GATC	2 cut(s)	295, 1159
Eam1104I	CTCTTC	2 cut(s)	333, 357
EarI	CTCTTC	2 cut(s)	333, 357
EciI	GGCGGA	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	41
Eco24I	GRGCYC	2 cut(s)	134, 245
Eco32I	GATATC	1 cut(s)	635
Eco53kI	GAGCTC	1 cut(s)	132
Eco57I	CTGAAG	2 cut(s)	267, 1220
Eco88I	CYCGRG	1 cut(s)	769
Eco91I	GGTNACC	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	132
EcoO65I	GGTNACC	1 cut(s)	398
EcoRI	GAATTC	3 cut(s)	406, 502, 868
EcoRII	CCWGG	1 cut(s)	896
EcoRV	GATATC	1 cut(s)	635
EcoT38I	GRGCYC	2 cut(s)	134, 245
FaeI	CATG	7 cut(s)	85, 285, 305, 455, 803, 864, 1177
FaqI	GGGAC	2 cut(s)	386, 914
FatI	CATG	7 cut(s)	81, 281, 301, 451, 799, 860, 1173
FauI	CCCGC	2 cut(s)	622, 1104
FauNDI	CATATG	2 cut(s)	183, 417
Fnu4HI	GCNGC	6 cut(s)	119, 199, 202, 317, 466, 477
FokI	GGATG	2 cut(s)	1129, 1138
FriOI	GRGCYC	2 cut(s)	134, 245
Fsp4HI	GCNGC	6 cut(s)	119, 199, 202, 317, 466, 477
FspBI	CTAG	4 cut(s)	263, 681, 711, 843
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	6 cut(s)	119, 199, 202, 317, 466, 477
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	3 cut(s)	41, 346, 715
HapII	CCGG	3 cut(s)	347, 569, 1169
HhaI	GCGC	1 cut(s)	641
Hin1II	CATG	7 cut(s)	85, 285, 305, 455, 803, 864, 1177
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HincII	GTYRAC	2 cut(s)	484, 598
HindII	GTYRAC	2 cut(s)	484, 598
HinfI	GANTC	9 cut(s)	86, 270, 374, 576, 623, 796, 857, 982, 1049
HpaII	CCGG	3 cut(s)	347, 569, 1169
HphI	GGTGA	3 cut(s)	290, 361, 1085
Hpy166II	GTNNAC	2 cut(s)	484, 598
Hpy188I	TCNGA	4 cut(s)	46, 174, 744, 1239
Hpy188III	TCNNGA	1 cut(s)	771
Hpy8I	GTNNAC	2 cut(s)	484, 598
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	5 cut(s)	352, 770, 1116, 1244, 1261
HpyCH4III	ACNGT	5 cut(s)	237, 259, 493, 595, 977
HpyCH4V	TGCA	7 cut(s)	316, 479, 514, 935, 1039, 1156, 1278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 124, 437
HpyF3I	CTNAG	2 cut(s)	43, 56
Hsp92II	CATG	7 cut(s)	85, 285, 305, 455, 803, 864, 1177
HspAI	GCGC	1 cut(s)	639
Kzo9I	GATC	2 cut(s)	295, 1159
LmnI	GCTCC	5 cut(s)	137, 163, 178, 436, 473
Lsp1109I	GCAGC	4 cut(s)	130, 328, 463, 477
LweI	GCATC	7 cut(s)	118, 328, 501, 802, 1005, 1113, 1116
MaeI	CTAG	4 cut(s)	263, 681, 711, 843
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	2 cut(s)	297, 1161
MboI	GATC	2 cut(s)	295, 1159
MflI	RGATCY	1 cut(s)	1159
MhlI	GDGCHC	2 cut(s)	134, 245
MlyI	GAGTC	3 cut(s)	368, 617, 976
MmeI	TCCRAC	2 cut(s)	511, 1185
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	4 cut(s)	36, 140, 879, 1248
MslI	CAYNNNNRTG	2 cut(s)	306, 393
MspI	CCGG	3 cut(s)	347, 569, 1169
MspR9I	CCNGG	2 cut(s)	898, 1169
Mva1269I	GAATGC	1 cut(s)	935
MvaI	CCWGG	1 cut(s)	898
MvnI	CGCG	3 cut(s)	145, 639, 1099
MwoI	GCNNNNNNNGC	3 cut(s)	115, 124, 437
NciI	CCSGG	1 cut(s)	1169
NdeI	CATATG	2 cut(s)	183, 417
NdeII	GATC	2 cut(s)	295, 1159
NheI	GCTAGC	1 cut(s)	262
NlaIII	CATG	7 cut(s)	85, 285, 305, 455, 803, 864, 1177
NmeAIII	GCCGAG	1 cut(s)	605
NspV	TTCGAA	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	41
PctI	GAATGC	1 cut(s)	935
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	6 cut(s)	86, 270, 576, 796, 857, 1049
PfoI	TCCNGGA	1 cut(s)	1167
PkrI	GCNGC	6 cut(s)	120, 200, 203, 318, 467, 478
PleI	GAGTC	3 cut(s)	368, 617, 976
PpsI	GAGTC	3 cut(s)	368, 617, 976
Psp124BI	GAGCTC	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	896
PspEI	GGTNACC	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	896
PstI	CTGCAG	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	1159
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	2 cut(s)	306, 393
SacI	GAGCTC	1 cut(s)	134
SaqAI	TTAA	4 cut(s)	36, 140, 879, 1248
SatI	GCNGC	6 cut(s)	119, 199, 202, 317, 466, 477
Sau3AI	GATC	2 cut(s)	295, 1159
SchI	GAGTC	3 cut(s)	368, 617, 976
ScrFI	CCNGG	2 cut(s)	898, 1169
SduI	GDGCHC	2 cut(s)	134, 245
SfaNI	GCATC	7 cut(s)	118, 328, 501, 802, 1005, 1113, 1116
SfcI	CTRYAG	1 cut(s)	477
SfuI	TTCGAA	1 cut(s)	89
SmiMI	CAYNNNNRTG	2 cut(s)	306, 393
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
SseBI	AGGCCT	1 cut(s)	41
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	4 cut(s)	263, 681, 711, 843
SstI	GAGCTC	1 cut(s)	134
StuI	AGGCCT	1 cut(s)	41
StyD4I	CCNGG	2 cut(s)	896, 1167
TaaI	ACNGT	5 cut(s)	237, 259, 493, 595, 977
TaqI	TCGA	7 cut(s)	89, 239, 252, 336, 518, 929, 1286
TaqII	GACCGA	2 cut(s)	141, 528
TauI	GCSGC	2 cut(s)	201, 204
TfiI	GAWTC	6 cut(s)	86, 270, 576, 796, 857, 1049
Tru1I	TTAA	4 cut(s)	36, 140, 879, 1248
Tru9I	TTAA	4 cut(s)	36, 140, 879, 1248
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	4 cut(s)	118, 316, 465, 476
TspRI	CASTG	1 cut(s)	76
XapI	RAATTY	5 cut(s)	406, 502, 700, 868, 1065
XcmI	CCANNNNNNNNNTGG	1 cut(s)	858
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	4 cut(s)	263, 681, 711, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.