Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006948

Physical Location & Seq

Genomic Coordinates Reverse (-)

802481 .. 805755

Gene Structure 3275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G009100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGAGTAGCCTTTTGTACAAATACAATCCTAATTTTAAGTGTTCAGAGGCAGAGCTGAGGAAGAACCACACAGAGTTCATGGATTCAAATATTTTCCAGCAACAGCAGCTACATCAGCAGCTGCAGCAGCCGCAGCAGCAGAGCTCTGGCCTAATGCGGTATCGGTCTGCTCCTAGCTCATTTCTAATGGATTTGGTGGATAGCAATGGTGGTGTTGGGTGCGAGGATTCGCGGTATCTTCGACCTTCAAGCCCCGAAGTGGAAACGGTGTTAGCCAGGTTCATTTCTTCATGTAATGAACCAGATCATCATGACAATGGTGCCAATAGTCTGCAGCATCAGTTTGAAGAGAGGGCTGTGAAGCAGGAAGCAGGGGACTCTGTTTCTAAACAGAATGGCTACTCAAATTCTTCTCATATGATGTACCAAGCTCAACAGGTTCATGCTTTGGATAATAACTCCTTTGCTGCTATCAACTCTACGGGGTTGGAGAATTCGATGCAGTCGAAAATTGGTGTTGGAAATCGCTCTAATCTTGTTAGACAAAGTAGCTCTCCGGCTGGATTCTTTCCTGACTTAACCGTTGACAATGGCTTTAATGTGATGAAAGATGGTGCAAGTTTTAGAGCAGGCAATGGTATAAATGGAGAAGCTAGTCCATCATCAACTTCTAGGTTGAATAATCAACTGAACTTCTCATCTGGGCCATCTTCGTACCCAAGACGTATGCCTCGGATTGCTGAAATGGAGAATGGAAACATGGGAGATGGTAGCCAACAGGATCAGGGTTTGGGAAATGCTAGCAATTCACATTGCATTTCTAACTTCCCAAATGATTCTTGGGACATTTCTTCATTTAATGACCTCAAAAGAGGCAGAAACAATGATGGGAACAAGTTTTCTAATTCAACTGCATTCGAAACTCAGAACAATGATTTTGGACACCGCAATCATGGCCTGACGCATCATTTGAGCTTGCCGAAACATTTTGAGATGCCTGCTATGGAGAAGCTTTTGCAATTTGAAGAATCGATTCCCTGTAAAATTCGTGCCAAAAGAGGTTTCGCCACTCACCCGCGAAGCATTGCAGAGAGGATGAGAAGGACACGGATTAGCGAAAGAATGAAGAAATTGCAGGATCTTTTCCCAAACATGGACAAGCAAATAAACACAGCGGAAATGTTGGACTTGGCGGTTGAGTTCATTAAAGACCTTCAGAAACAGGTTAAGACACTCGGGGATATAAAGGCGAAGTGCAGTTGTTCAAGTAAACAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

427

Amino Acids

47.7

Weight (kDa)

8.11

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006948)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g00670 FvH4_7g00670 FvH4_7g00670 FvH4_7g00670 FvH4_7g00670 FvH4_7g00670 FvH4_7g00670 FvH4_7g00670 FvH4_7g00670
malus_domestica	MD02G1315600.v1.1 MD02G1315700.v1.1 MD07G1006400.v1.1
prunus_persica	Prupe.2G009100_v2.0.a1 Prupe.2G009100_v2.0.a1 Prupe.2G009100_v2.0.a1
pyrus_communis	pycom02g26450 pycom07g00510
rosa_chinensis	RchiOBHm_Chr1g0314891
rosa_laevigata	RLG00000030757
rosa_roxburghii	Rroxscaffold_4G00331700
rosa_rugosa	Rorug01G0002700
rosa_samantha	Rh1AG013700 Rh1BG005300 Rh1CG012000 Rh1DG007100
rosa_wichuraiana	Rw1G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	320
AccII	CGCG	2 cut(s)	232, 1078
AciI	CCGC	7 cut(s)	131, 157, 232, 946, 1076, 1175, 1193
AclWI	GGATC	2 cut(s)	789, 1146
AcsI	RAATTY	3 cut(s)	406, 493, 1044
AcuI	CTGAAG	1 cut(s)	1199
AfaI	GTAC	3 cut(s)	17, 425, 716
AfiI	CCNNNNNNNGG	2 cut(s)	259, 1153
AgsI	TTSAA	7 cut(s)	87, 249, 347, 679, 909, 1025, 1266
AjnI	CCWGG	1 cut(s)	275
AjuI	GAANNNNNNNTTGG	2 cut(s)	1046, 1078
Alw21I	GWGCWC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	789, 1146
AlwNI	CAGNNNCTG	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	1235
AoxI	GGCC	3 cut(s)	148, 704, 955
ApeKI	GCWGC	9 cut(s)	106, 118, 121, 124, 127, 133, 136, 334, 467
ApoI	RAATTY	3 cut(s)	406, 493, 1044
ArsI	GACNNNNNNTTYG	2 cut(s)	952, 984
Asp700I	GAANNNNTTC	1 cut(s)	1032
AspS9I	GGNCC	1 cut(s)	704
AsuHPI	GGTGA	1 cut(s)	1064
AsuII	TTCGAA	1 cut(s)	918
AsuNHI	GCTAGC	1 cut(s)	800
AvaI	CYCGRG	1 cut(s)	1235
BanI	GGYRCC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	146
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	9 cut(s)	108, 118, 130, 136, 139, 145, 148, 346, 454
BccI	CCATC	5 cut(s)	605, 667, 715, 761, 881
BciT130I	CCWGG	1 cut(s)	277
BfaI	CTAG	4 cut(s)	174, 654, 672, 801
BfmI	CTRYAG	2 cut(s)	122, 332
Bme1390I	CCNGG	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	1235
BmgT120I	GGNCC	1 cut(s)	704
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	4 cut(s)	346, 489, 973, 984
BmtI	GCTAGC	1 cut(s)	804
Bpu10I	CCTNAGC	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	918
Bsa29I	ATCGAT	1 cut(s)	1031
BsaJI	CCNNGG	1 cut(s)	731
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 1153
Bse3DI	GCAATG	4 cut(s)	211, 640, 811, 1083
BseBI	CCWGG	1 cut(s)	277
BseCI	ATCGAT	1 cut(s)	1031
BseDI	CCNNGG	1 cut(s)	731
BseGI	GGATG	1 cut(s)	1101
BseLI	CCNNNNNNNGG	2 cut(s)	259, 1153
BseMI	GCAATG	4 cut(s)	211, 640, 811, 1083
BseMII	CTCAG	2 cut(s)	47, 938
BseXI	GCAGC	9 cut(s)	108, 118, 130, 136, 139, 145, 148, 346, 454
BsgI	GTGCAG	1 cut(s)	1276
Bsh1236I	CGCG	2 cut(s)	232, 1078
BshFI	GGCC	3 cut(s)	150, 706, 957
BshNI	GGYRCC	1 cut(s)	320
BshVI	ATCGAT	1 cut(s)	1031
BsiHKAI	GWGCWC	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	1235
BsiSI	CCGG	1 cut(s)	557
BslFI	GGGAC	2 cut(s)	389, 857
BslI	CCNNNNNNNGG	2 cut(s)	259, 1153
BsmFI	GGGAC	2 cut(s)	389, 857
BsmI	GAATGC	1 cut(s)	914
BsnI	GGCC	3 cut(s)	150, 706, 957
BsoBI	CYCGRG	1 cut(s)	1235
Bsp119I	TTCGAA	1 cut(s)	918
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	3 cut(s)	304, 781, 1138
BspACI	CCGC	7 cut(s)	131, 157, 232, 946, 1076, 1175, 1193
BspANI	GGCC	3 cut(s)	150, 706, 957
BspCNI	CTCAG	2 cut(s)	48, 937
BspDI	ATCGAT	1 cut(s)	1031
BspFNI	CGCG	2 cut(s)	232, 1078
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	322
BspMAI	CTGCAG	2 cut(s)	126, 336
BspOI	GCTAGC	1 cut(s)	804
BspPI	GGATC	2 cut(s)	789, 1146
BspT104I	TTCGAA	1 cut(s)	918
BspT107I	GGYRCC	1 cut(s)	320
BsrDI	GCAATG	4 cut(s)	211, 640, 811, 1083
BsrGI	TGTACA	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	731
BssMI	GATC	3 cut(s)	304, 781, 1138
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	2 cut(s)	268, 583
Bst6I	CTCTTC	1 cut(s)	342
BstAUI	TGTACA	1 cut(s)	15
BstBI	TTCGAA	1 cut(s)	918
BstC8I	GCNNGC	4 cut(s)	631, 802, 977, 999
BstDEI	CTNAG	2 cut(s)	56, 924
BstF5I	GGATG	1 cut(s)	1101
BstFNI	CGCG	2 cut(s)	232, 1078
BstKTI	GATC	3 cut(s)	307, 784, 1141
BstMBI	GATC	3 cut(s)	304, 781, 1138
BstMWI	GCNNNNNNNGC	8 cut(s)	106, 115, 124, 127, 130, 133, 136, 954
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	275
BstSFI	CTRYAG	2 cut(s)	122, 332
BstUI	CGCG	2 cut(s)	232, 1078
BstV1I	GCAGC	9 cut(s)	108, 118, 130, 136, 139, 145, 148, 346, 454
BstX2I	RGATCY	1 cut(s)	1138
BstYI	RGATCY	1 cut(s)	1138
Bsu15I	ATCGAT	1 cut(s)	1031
BsuRI	GGCC	3 cut(s)	150, 706, 957
BsuTUI	ATCGAT	1 cut(s)	1031
BtsCI	GGATG	1 cut(s)	1101
Cac8I	GCNNGC	4 cut(s)	631, 802, 977, 999
CaiI	CAGNNNCTG	1 cut(s)	121
CciI	TCATGA	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	704
ClaI	ATCGAT	1 cut(s)	1031
CseI	GACGC	1 cut(s)	970
Csp6I	GTAC	3 cut(s)	16, 424, 715
CviAII	CATG	7 cut(s)	79, 291, 311, 443, 760, 953, 1153
CviQI	GTAC	3 cut(s)	16, 424, 715
DdeI	CTNAG	2 cut(s)	56, 924
DpnI	GATC	3 cut(s)	306, 783, 1140
DpnII	GATC	3 cut(s)	304, 781, 1138
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Ecl136II	GAGCTC	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	1199
Eco88I	CYCGRG	1 cut(s)	1235
EcoICRI	GAGCTC	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	146
FaeI	CATG	7 cut(s)	82, 294, 314, 446, 763, 956, 1156
FaqI	GGGAC	2 cut(s)	389, 857
FatI	CATG	7 cut(s)	78, 290, 310, 442, 759, 952, 1152
FauI	CCCGC	1 cut(s)	1083
FauNDI	CATATG	1 cut(s)	417
FokI	GGATG	1 cut(s)	1108
FriOI	GRGCYC	1 cut(s)	146
FspBI	CTAG	4 cut(s)	174, 654, 672, 801
HaeIII	GGCC	3 cut(s)	150, 706, 957
HapII	CCGG	1 cut(s)	557
HgaI	GACGC	1 cut(s)	970
Hin1II	CATG	7 cut(s)	82, 294, 314, 446, 763, 956, 1156
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HindIII	AAGCTT	1 cut(s)	1010
HinfI	GANTC	7 cut(s)	83, 227, 377, 564, 836, 1028, 1033
HpaII	CCGG	1 cut(s)	557
HphI	GGTGA	1 cut(s)	1064
Hpy166II	GTNNAC	2 cut(s)	586, 1271
Hpy188I	TCNGA	4 cut(s)	46, 735, 927, 1218
Hpy188III	TCNNGA	2 cut(s)	311, 572
Hpy8I	GTNNAC	2 cut(s)	586, 1271
HpyAV	CCTTC	3 cut(s)	255, 1095, 1223
HpyCH4III	ACNGT	2 cut(s)	268, 583
HpyCH4IV	ACGT	1 cut(s)	724
HpyF10VI	GCNNNNNNNGC	8 cut(s)	106, 115, 124, 127, 130, 133, 136, 954
HpyF3I	CTNAG	2 cut(s)	56, 924
HpySE526I	ACGT	1 cut(s)	724
Hsp92II	CATG	7 cut(s)	82, 294, 314, 446, 763, 956, 1156
Kzo9I	GATC	3 cut(s)	304, 781, 1138
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	9 cut(s)	108, 118, 130, 136, 139, 145, 148, 346, 454
LweI	GCATC	4 cut(s)	346, 489, 973, 984
MaeI	CTAG	4 cut(s)	174, 654, 672, 801
MaeII	ACGT	1 cut(s)	724
MalI	GATC	3 cut(s)	306, 783, 1140
MboI	GATC	3 cut(s)	304, 781, 1138
MboII	GAAGA	9 cut(s)	73, 230, 279, 359, 402, 702, 843, 1037, 1138
MflI	RGATCY	1 cut(s)	1138
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	9 cut(s)	31, 406, 493, 510, 805, 904, 1019, 1044, 1130
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	3 cut(s)	468, 499, 1164
MnlI	CCTC	9 cut(s)	40, 51, 217, 345, 741, 866, 875, 1052, 1086
MroXI	GAANNNNTTC	1 cut(s)	1032
MseI	TTAA	6 cut(s)	36, 578, 597, 858, 1206, 1227
MslI	CAYNNNNRTG	1 cut(s)	315
MspA1I	CMGCKG	2 cut(s)	121, 1175
MspI	CCGG	1 cut(s)	557
MspR9I	CCNGG	1 cut(s)	277
Mva1269I	GAATGC	1 cut(s)	914
MvaI	CCWGG	1 cut(s)	277
MvnI	CGCG	2 cut(s)	232, 1078
MwoI	GCNNNNNNNGC	8 cut(s)	106, 115, 124, 127, 130, 133, 136, 954
NdeI	CATATG	1 cut(s)	417
NdeII	GATC	3 cut(s)	304, 781, 1138
NheI	GCTAGC	1 cut(s)	800
NlaIII	CATG	7 cut(s)	82, 294, 314, 446, 763, 956, 1156
NlaIV	GGNNCC	1 cut(s)	322
NspV	TTCGAA	1 cut(s)	918
PagI	TCATGA	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	503
PctI	GAATGC	1 cut(s)	914
PdmI	GAANNNNTTC	1 cut(s)	1032
PfeI	GAWTC	6 cut(s)	83, 227, 564, 836, 1028, 1033
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	704
PstI	CTGCAG	2 cut(s)	126, 336
PstNI	CAGNNNCTG	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	1138
PvuII	CAGCTG	1 cut(s)	121
RsaI	GTAC	3 cut(s)	17, 425, 716
RsaNI	GTAC	3 cut(s)	16, 424, 715
RseI	CAYNNNNRTG	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	146
SaqAI	TTAA	6 cut(s)	36, 578, 597, 858, 1206, 1227
Sau3AI	GATC	3 cut(s)	304, 781, 1138
Sau96I	GGNCC	1 cut(s)	704
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	146
SfaNI	GCATC	4 cut(s)	346, 489, 973, 984
SfcI	CTRYAG	2 cut(s)	122, 332
SfuI	TTCGAA	1 cut(s)	918
SmiMI	CAYNNNNRTG	1 cut(s)	315
Sse9I	AATT	9 cut(s)	31, 406, 493, 510, 805, 904, 1019, 1044, 1130
SsiI	CCGC	7 cut(s)	131, 157, 232, 946, 1076, 1175, 1193
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	4 cut(s)	174, 654, 672, 801
SstI	GAGCTC	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	275
TaaI	ACNGT	2 cut(s)	268, 583
TaiI	ACGT	1 cut(s)	727
TaqI	TCGA	5 cut(s)	241, 497, 506, 918, 1031
TaqII	GACCGA	1 cut(s)	153
TasI	AATT	9 cut(s)	31, 406, 493, 510, 805, 904, 1019, 1044, 1130
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	6 cut(s)	83, 227, 564, 836, 1028, 1033
Tru1I	TTAA	6 cut(s)	36, 578, 597, 858, 1206, 1227
Tru9I	TTAA	6 cut(s)	36, 578, 597, 858, 1206, 1227
TseI	GCWGC	9 cut(s)	106, 118, 121, 124, 127, 133, 136, 334, 467
TspDTI	ATGAA	9 cut(s)	67, 271, 279, 312, 431, 620, 843, 1139, 1192
TspGWI	ACGGA	1 cut(s)	1123
XapI	RAATTY	3 cut(s)	406, 493, 1044
XcmI	CCANNNNNNNNNTGG	1 cut(s)	837
XmnI	GAANNNNTTC	1 cut(s)	1032
XspI	CTAG	4 cut(s)	174, 654, 672, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.