Rh1DG007100

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006948
Physical Location & Seq
Forward (+)
1028543 .. 1031578
3036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG007100.1

Sequence Viewer

Length: 1293 bp
ATGAGTAGCCTTTTGTACAGTCCAAACTTTAAGTCTTCCGAAGCAGAGTTGAGGAAGAACCACGCAGAATTCTTGGATTCATCAAATGGTTTCCAACAACAACAGTCACAGCAGCAGCAGCAACAGAGCTCTGGCCTAATGCGGTATCGGTCTGCTCCGAGCTCACTTTTGCTGGACCTTGTTGACAACAATGGTGATGCTGTATGTGAGGATTTTCGATATCCTCGACCTTCCAGCCCCGAAGTGGAAACCGTCTTGGCAAGGTTCATTTCATCATGTAATGCACCTGATACTGACAATGGTTCCAATAATAACGCGCACCATCTGTTCCAAGGAAGGCCTGTGAAGCAAGAAGCAGGGGACTCTGTTTCGAAACAGAGCGGTTACTCAAATTCTCCTCAGATGATGTACCAGACTCAACAAGTTCATCCTTTGGATAATGCCTCCTCCTTTGGTGCTTTCAAATCTACCGTCTTGGAGAACTCGATGGAATCGAAAATGGGTGTTGGAAATCGCTCTAATCTTGTTAGGCAAAGTAGCTCTCCAGCTGGATTCTTCCCCAACTTAAACGTTGACAATGGCTTCAATCTGATGAAAGATGCTTCAAGTTTTGGAGTAGGCAATGGTACAATTGGAGAAGCTAGTCCATCAACTTCTAGGTTGAATACCCAATTTAGTTTCTCCTCTGCTGCATCAACTCCATACTCAAGAGAGGCCAGACGTTTGCCTCAAATTGCTGAAATTGGGAATGGAAACATAGGAGAGGTTAGTGAACCGGATCAAAGCTTAGGAAATGCTACTAATGGTAGCATTTCACATTACATACCTGACTATTCAAATGATACGTGGGACAATTCTGCATTTCATGACCTCAAAAGAGGCAGAGATAATGATGGGAACAAGTTTTCTACTACGACTGCATTGGACACCCAGAATGTGGATTTTGGACACCGCAGTTACGCTCTTACTCATCATTTGAGCTTGCCTAAACATTTTGAGATGCCTGCTATGGAGAAGCTTCTACATTTTCAAGATTCCATTCCATGTAAAATTCGTGCCAAAAGAGGCTTCGCGACTCACCCACGAAGCATTGCAGAGAGGATGAGAAGAACGCGGATTAGTGAGAGAATGAGGAAACTGCAAGATCTTTTCCCAAACATGGACAAGCAAATAAACACAGCCGAAATGTTGGAGTTGGCAGTTGAGCACATTAAAGACCTGCAGAAACAGGTTAAGACACTCAAGGAAACAAAGGCGAAGTGCAGTTGTTCAAGTAAACAGAAACACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

430

Amino Acids

47.83

Weight (kDa)

8.19

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 363 - 408 2.5e-08 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1227
AccB7I CCANNNNNTGG 1 cut(s) 937
AccBSI CCGCTC 1 cut(s) 381
AccII CGCG 3 cut(s) 317, 1073, 1114
AciI CCGC 4 cut(s) 142, 381, 952, 1114
AclI AACGTT 1 cut(s) 570
AclWI GGATC 1 cut(s) 786
AcsI RAATTY 3 cut(s) 68, 391, 1050
AfaI GTAC 3 cut(s) 17, 410, 628
AfiI CCNNNNNNNGG 3 cut(s) 244, 937, 1159
AgsI TTSAA 7 cut(s) 463, 586, 606, 664, 837, 1031, 1272
AjuI GAANNNNNNNTTGG 2 cut(s) 1052, 1084
AluBI AGCT 8 cut(s) 129, 162, 540, 548, 641, 786, 981, 1018
AluI AGCT 8 cut(s) 129, 162, 540, 548, 641, 786, 981, 1018
Alw21I GWGCWC 3 cut(s) 131, 164, 1209
AlwI GGATC 1 cut(s) 786
AoxI GGCC 3 cut(s) 133, 338, 714
ApeKI GCWGC 4 cut(s) 112, 115, 118, 689
ApoI RAATTY 3 cut(s) 68, 391, 1050
ArsI GACNNNNNNTTYG 4 cut(s) 17, 49, 456, 488
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 206, 1070
AsuII TTCGAA 1 cut(s) 371
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 2 cut(s) 131, 164
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 3 cut(s) 131, 164, 1209
BbvI GCAGC 4 cut(s) 124, 127, 130, 676
BccI CCATC 4 cut(s) 330, 481, 655, 887
BfaI CTAG 2 cut(s) 642, 657
BfmI CTRYAG 1 cut(s) 1220
BfuAI ACCTGC 1 cut(s) 1227
BglII AGATCT 1 cut(s) 1144
BisI GCNGC 4 cut(s) 113, 116, 119, 690
BlsI GCNGC 4 cut(s) 114, 117, 120, 691
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 304
BmsI GCATC 4 cut(s) 187, 589, 701, 990
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 528
Bpu10I CCTNAGC 1 cut(s) 787
Bpu14I TTCGAA 1 cut(s) 371
BpuEI CTTGAG 2 cut(s) 691, 1226
BsaAI YACGTR 1 cut(s) 846
BsaJI CCNNGG 1 cut(s) 331
BsaWI WCCGGW 1 cut(s) 775
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 937, 1159
Bse3DI GCAATG 2 cut(s) 628, 1089
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 2 cut(s) 427, 1107
BseLI CCNNNNNNNGG 3 cut(s) 244, 937, 1159
BseMI GCAATG 2 cut(s) 628, 1089
BseMII CTCAG 1 cut(s) 413
BseRI GAGGAG 3 cut(s) 387, 436, 673
BseXI GCAGC 4 cut(s) 124, 127, 130, 676
BsgI GTGCAG 1 cut(s) 1282
Bsh1236I CGCG 3 cut(s) 317, 1073, 1114
BshFI GGCC 3 cut(s) 135, 340, 716
BsiHKAI GWGCWC 3 cut(s) 131, 164, 1209
BsiSI CCGG 1 cut(s) 776
BslFI GGGAC 2 cut(s) 374, 863
BslI CCNNNNNNNGG 3 cut(s) 244, 937, 1159
BsmFI GGGAC 2 cut(s) 374, 863
BsnI GGCC 3 cut(s) 135, 340, 716
Bsp119I TTCGAA 1 cut(s) 371
Bsp1286I GDGCHC 3 cut(s) 131, 164, 1209
Bsp1407I TGTACA 1 cut(s) 15
Bsp143I GATC 2 cut(s) 778, 1144
Bsp68I TCGCGA 1 cut(s) 1073
BspACI CCGC 4 cut(s) 142, 381, 952, 1114
BspANI GGCC 3 cut(s) 135, 340, 716
BspCNI CTCAG 1 cut(s) 412
BspFNI CGCG 3 cut(s) 317, 1073, 1114
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 1224
BspMI ACCTGC 1 cut(s) 1227
BspPI GGATC 1 cut(s) 786
BspT104I TTCGAA 1 cut(s) 371
BsrBI CCGCTC 1 cut(s) 381
BsrDI GCAATG 2 cut(s) 628, 1089
BsrGI TGTACA 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 2 cut(s) 778, 1144
BssT1I CCWWGG 1 cut(s) 331
Bst4CI ACNGT 4 cut(s) 20, 105, 253, 472
BstAUI TGTACA 1 cut(s) 15
BstBAI YACGTR 1 cut(s) 846
BstBI TTCGAA 1 cut(s) 371
BstC8I GCNNGC 2 cut(s) 983, 1005
BstDEI CTNAG 2 cut(s) 399, 787
BstF5I GGATG 2 cut(s) 427, 1107
BstFNI CGCG 3 cut(s) 317, 1073, 1114
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 2 cut(s) 781, 1147
BstMBI GATC 2 cut(s) 778, 1144
BstMWI GCNNNNNNNGC 2 cut(s) 118, 346
BstSFI CTRYAG 1 cut(s) 1220
BstUI CGCG 3 cut(s) 317, 1073, 1114
BstV1I GCAGC 4 cut(s) 124, 127, 130, 676
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 1144
BstYI RGATCY 1 cut(s) 1144
BsuRI GGCC 3 cut(s) 135, 340, 716
BtsCI GGATG 2 cut(s) 427, 1107
BtuMI TCGCGA 1 cut(s) 1073
BveI ACCTGC 1 cut(s) 1227
Cac8I GCNNGC 2 cut(s) 983, 1005
CciI TCATGA 1 cut(s) 865
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 3 cut(s) 16, 409, 627
CviAII CATG 4 cut(s) 276, 866, 1044, 1159
CviQI GTAC 3 cut(s) 16, 409, 627
DdeI CTNAG 2 cut(s) 399, 787
DpnI GATC 2 cut(s) 780, 1146
DpnII GATC 2 cut(s) 778, 1144
Ecl136II GAGCTC 2 cut(s) 129, 162
Eco130I CCWWGG 1 cut(s) 331
Eco147I AGGCCT 1 cut(s) 340
Eco24I GRGCYC 2 cut(s) 131, 164
Eco32I GATATC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 175
Eco53kI GAGCTC 2 cut(s) 129, 162
EcoICRI GAGCTC 2 cut(s) 129, 162
EcoRI GAATTC 1 cut(s) 68
EcoRV GATATC 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 331
EcoT38I GRGCYC 2 cut(s) 131, 164
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 4 cut(s) 279, 869, 1047, 1162
FaiI YATR 9 cut(s) 205, 277, 703, 758, 824, 867, 1010, 1045, 1160
FaqI GGGAC 2 cut(s) 374, 863
FatI CATG 4 cut(s) 275, 865, 1043, 1158
Fnu4HI GCNGC 4 cut(s) 113, 116, 119, 690
FokI GGATG 2 cut(s) 414, 1114
FriOI GRGCYC 2 cut(s) 131, 164
Fsp4HI GCNGC 4 cut(s) 113, 116, 119, 690
FspBI CTAG 2 cut(s) 642, 657
GlaI GCGC 1 cut(s) 318
GluI GCNGC 4 cut(s) 113, 116, 119, 690
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 3 cut(s) 135, 340, 716
HapII CCGG 1 cut(s) 776
HhaI GCGC 1 cut(s) 319
Hin1II CATG 4 cut(s) 279, 869, 1047, 1162
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 2 cut(s) 184, 574
HindII GTYRAC 2 cut(s) 184, 574
HindIII AAGCTT 2 cut(s) 784, 1016
HinfI GANTC 7 cut(s) 77, 362, 415, 491, 552, 1034, 1075
HpaII CCGG 1 cut(s) 776
HphI GGTGA 2 cut(s) 206, 1070
Hpy166II GTNNAC 4 cut(s) 184, 574, 773, 1277
Hpy188I TCNGA 4 cut(s) 40, 159, 402, 591
Hpy188III TCNNGA 4 cut(s) 708, 866, 1031, 1072
Hpy8I GTNNAC 4 cut(s) 184, 574, 773, 1277
HpyAV CCTTC 2 cut(s) 240, 330
HpyCH4III ACNGT 4 cut(s) 20, 105, 253, 472
HpyCH4IV ACGT 3 cut(s) 570, 721, 845
HpyCH4V TGCA 8 cut(s) 284, 692, 860, 920, 1094, 1141, 1222, 1263
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 346
HpyF3I CTNAG 2 cut(s) 399, 787
HpySE526I ACGT 3 cut(s) 570, 721, 845
Hsp92II CATG 4 cut(s) 279, 869, 1047, 1162
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 2 cut(s) 778, 1144
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 4 cut(s) 124, 127, 130, 676
LweI GCATC 4 cut(s) 187, 589, 701, 990
MaeI CTAG 2 cut(s) 642, 657
MaeII ACGT 3 cut(s) 570, 721, 845
MaeIII GTNAC 3 cut(s) 105, 383, 956
MalI GATC 2 cut(s) 780, 1146
MbiI CCGCTC 1 cut(s) 381
MboI GATC 2 cut(s) 778, 1144
MboII GAAGA 4 cut(s) 27, 67, 547, 1119
MfeI CAATTG 1 cut(s) 630
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 3 cut(s) 131, 164, 1209
MluCI AATT 9 cut(s) 68, 391, 630, 671, 732, 741, 853, 1050, 1288
MlyI GAGTC 3 cut(s) 356, 409, 1069
MmeI TCCRAC 3 cut(s) 118, 487, 1170
MseI TTAA 5 cut(s) 30, 566, 1212, 1233, 1291
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 1 cut(s) 776
MunI CAATTG 1 cut(s) 630
MvnI CGCG 3 cut(s) 317, 1073, 1114
MwoI GCNNNNNNNGC 2 cut(s) 118, 346
NdeII GATC 2 cut(s) 778, 1144
NlaIII CATG 4 cut(s) 279, 869, 1047, 1162
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 105
NruI TCGCGA 1 cut(s) 1073
NspV TTCGAA 1 cut(s) 371
PagI TCATGA 1 cut(s) 865
PceI AGGCCT 1 cut(s) 340
PcsI WCGNNNNNNNCGW 2 cut(s) 223, 491
PfeI GAWTC 4 cut(s) 77, 491, 552, 1034
PflMI CCANNNNNTGG 1 cut(s) 937
PkrI GCNGC 4 cut(s) 114, 117, 120, 691
PleI GAGTC 3 cut(s) 356, 409, 1069
PpsI GAGTC 3 cut(s) 356, 409, 1069
Ppu21I YACGTR 1 cut(s) 846
Psp124BI GAGCTC 2 cut(s) 131, 164
Psp1406I AACGTT 1 cut(s) 570
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 1 cut(s) 175
PstI CTGCAG 1 cut(s) 1224
PsuI RGATCY 1 cut(s) 1144
PvuII CAGCTG 1 cut(s) 548
RruI TCGCGA 1 cut(s) 1073
RsaI GTAC 3 cut(s) 17, 410, 628
RsaNI GTAC 3 cut(s) 16, 409, 627
SacI GAGCTC 2 cut(s) 131, 164
SaqAI TTAA 5 cut(s) 30, 566, 1212, 1233, 1291
SatI GCNGC 4 cut(s) 113, 116, 119, 690
Sau3AI GATC 2 cut(s) 778, 1144
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 3 cut(s) 356, 409, 1069
SduI GDGCHC 3 cut(s) 131, 164, 1209
SfaNI GCATC 4 cut(s) 187, 589, 701, 990
SfcI CTRYAG 1 cut(s) 1220
SfuI TTCGAA 1 cut(s) 371
SinI GGWCC 1 cut(s) 175
SmlI CTYRAG 2 cut(s) 706, 1241
SmoI CTYRAG 2 cut(s) 706, 1241
Sse9I AATT 9 cut(s) 68, 391, 630, 671, 732, 741, 853, 1050, 1288
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 4 cut(s) 142, 381, 952, 1114
SspMI CTAG 2 cut(s) 642, 657
SstI GAGCTC 2 cut(s) 131, 164
StuI AGGCCT 1 cut(s) 340
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 4 cut(s) 20, 105, 253, 472
TaiI ACGT 3 cut(s) 573, 724, 848
TaqI TCGA 5 cut(s) 217, 226, 371, 485, 494
TaqII GACCGA 1 cut(s) 138
TasI AATT 9 cut(s) 68, 391, 630, 671, 732, 741, 853, 1050, 1288
TatI WGTACW 1 cut(s) 15
TfiI GAWTC 4 cut(s) 77, 491, 552, 1034
Tru1I TTAA 5 cut(s) 30, 566, 1212, 1233, 1291
Tru9I TTAA 5 cut(s) 30, 566, 1212, 1233, 1291
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 4 cut(s) 112, 115, 118, 689
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 6 cut(s) 69, 256, 261, 416, 608, 854
Van91I CCANNNNNTGG 1 cut(s) 937
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 3 cut(s) 68, 391, 1050
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XspI CTAG 2 cut(s) 642, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.