Rh1CG012000

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006948
Physical Location & Seq
Forward (+)
1873206 .. 1876187
2982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG012000.1

Sequence Viewer

Length: 1287 bp
ATGAGTAGCCTTTTGTACAGTCCAAACTTTAAGTCTTCCGAAGCAGAGTTGAGGAAGAACCACGGAGAATTCCTGGATTCATCAAATGGTTTCCAACAACAGCAGTCACAGCAACAACAGAGCTCTGGCCTAATGCGGTATCGGTCTGCTCCGAGCTCAGTTTTGCTGGACCTCGTTGACAACAATGGTGATGCTGGATGTGAGGATTTTCGATATCCTCGACCTTCCAGCCCCGAAGTGGAAACCGTCTTGGCAAGGTTCATTTCATCATGTAATGCACCTGATACTGACAATGGTTCCAATAATAATGGGCACCATCTGTTCCAAGAAAGGCCTGTGAAGCAAGAAGCAGGGGACTCTGTTTCGAAACAGAGCGGTTACTCAAATTCTCCTCAGATGATGTACCACACTCAACAAGTTCATCCTTTGGATAATGCCTCCTCCTTTGGTGCTTTCAAATCTACCGTCTTGGAGAACTCAATGGAATCGAAAATGGGTGTTGGAAATCGCTCTAATCTTGTTAGGCAAAGTAGCTCTCCAGCTGGATTCTTCCCCAACTTAAACGTTGACAATGGCTTCAATCTGATGAAAGATGCTTCAAGTTTTGGAGTAGGCAATGGTACAAATGGAGAAGCTAGTCCATCAGCTTCTAGGTTGAATACCCAATTTCGTTTCTCCTCTGCTGCATCACCTCCCTACTCAAGAGAGTCCAGACGTTTGCCTCGAATTGCTGAAATTGGGAATGGAAACATAGGAGAGGTTAGTGAACCGGATCAAAGCTTAGGAAATGCTACTAATGGTAGCAGTTCACATTACATACCTGACTATTCAAATGATACGTGGGACAATTCTGCATTTCATGACCTCAAAAGAGGCAGAGATAATGATGGGAACAAGTTTTCTACTACGACTGCATTGGACACCCAGAATGTGGATTTTGGACACCGCAGTTACGCTCTTACTCATCATTTGAGCTTGCCTAAACATTTTGAGATGCCTGCTATGGATAAGCTTCTACATTTTCAAGATTCCATTCCATGTAAAATTCGTGCCAAAAGAGGCTTCGCGACTCACCCACGAAGCATTGCAGAGAGGATGAGAAGAACGCGGATCAGTGAAAGAATGAGGAAACTGCAAGATCTTTTCCCAAACATGGACAAGCAAATAAACACAGCCGAAATGTTGGAGTTGGCAGTTGAGCACATTAAAGACCTGCAGAAACAGGTTAAGACACTCAGGGATACAAAGGCGAAGTGCAGTTGTTCAAGTAAACAGAAACACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

428

Amino Acids

47.63

Weight (kDa)

8.48

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 361 - 406 2.5e-08 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1221
AccB1I GGYRCC 1 cut(s) 312
AccB7I CCANNNNNTGG 1 cut(s) 931
AccBSI CCGCTC 1 cut(s) 375
AccII CGCG 2 cut(s) 1067, 1108
AciI CCGC 4 cut(s) 136, 375, 946, 1108
AclI AACGTT 1 cut(s) 564
AclWI GGATC 2 cut(s) 780, 1118
AcsI RAATTY 3 cut(s) 68, 385, 1044
AfaI GTAC 3 cut(s) 17, 404, 622
AfiI CCNNNNNNNGG 3 cut(s) 238, 931, 1153
AgsI TTSAA 7 cut(s) 457, 580, 600, 658, 831, 1025, 1266
AjnI CCWGG 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 1046, 1078
AluBI AGCT 9 cut(s) 123, 156, 534, 542, 635, 647, 780, 975, 1012
AluI AGCT 9 cut(s) 123, 156, 534, 542, 635, 647, 780, 975, 1012
Alw21I GWGCWC 3 cut(s) 125, 158, 1203
AlwI GGATC 2 cut(s) 780, 1118
AoxI GGCC 2 cut(s) 127, 332
ApeKI GCWGC 1 cut(s) 683
ApoI RAATTY 3 cut(s) 68, 385, 1044
ArsI GACNNNNNNTTYG 4 cut(s) 17, 49, 450, 482
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 3 cut(s) 200, 681, 1064
AsuII TTCGAA 1 cut(s) 365
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 315
BanI GGYRCC 1 cut(s) 312
BanII GRGCYC 2 cut(s) 125, 158
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 3 cut(s) 125, 158, 1203
BbvI GCAGC 1 cut(s) 670
BccI CCATC 3 cut(s) 324, 649, 881
BciT130I CCWGG 1 cut(s) 74
BciVI GTATCC 1 cut(s) 1234
BfaI CTAG 2 cut(s) 636, 651
BfmI CTRYAG 1 cut(s) 1214
BfuAI ACCTGC 1 cut(s) 1221
BfuI GTATCC 1 cut(s) 1234
BglII AGATCT 1 cut(s) 1138
BisI GCNGC 1 cut(s) 684
BlsI GCNGC 1 cut(s) 685
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 2 cut(s) 298, 314
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 4 cut(s) 181, 583, 695, 984
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 522
Bpu10I CCTNAGC 1 cut(s) 781
Bpu14I TTCGAA 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 685
BsaAI YACGTR 1 cut(s) 840
BsaJI CCNNGG 1 cut(s) 61
BsaWI WCCGGW 1 cut(s) 769
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 931, 1153
Bse3DI GCAATG 2 cut(s) 622, 1083
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 3 cut(s) 203, 421, 1101
BseLI CCNNNNNNNGG 3 cut(s) 238, 931, 1153
BseMI GCAATG 2 cut(s) 622, 1083
BseMII CTCAG 3 cut(s) 171, 407, 1249
BseRI GAGGAG 3 cut(s) 381, 430, 667
BseSI GKGCMC 1 cut(s) 315
BseXI GCAGC 1 cut(s) 670
BsgI GTGCAG 1 cut(s) 1276
Bsh1236I CGCG 2 cut(s) 1067, 1108
BshFI GGCC 2 cut(s) 129, 334
BshNI GGYRCC 1 cut(s) 312
BsiHKAI GWGCWC 3 cut(s) 125, 158, 1203
BsiSI CCGG 1 cut(s) 770
BslFI GGGAC 2 cut(s) 368, 857
BslI CCNNNNNNNGG 3 cut(s) 238, 931, 1153
BsmFI GGGAC 2 cut(s) 368, 857
BsnI GGCC 2 cut(s) 129, 334
Bsp119I TTCGAA 1 cut(s) 365
Bsp1286I GDGCHC 4 cut(s) 125, 158, 315, 1203
Bsp1407I TGTACA 1 cut(s) 15
Bsp143I GATC 3 cut(s) 772, 1110, 1138
Bsp68I TCGCGA 1 cut(s) 1067
BspACI CCGC 4 cut(s) 136, 375, 946, 1108
BspANI GGCC 2 cut(s) 129, 334
BspCNI CTCAG 3 cut(s) 170, 406, 1248
BspFNI CGCG 2 cut(s) 1067, 1108
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 2 cut(s) 298, 314
BspMAI CTGCAG 1 cut(s) 1218
BspMI ACCTGC 1 cut(s) 1221
BspPI GGATC 2 cut(s) 780, 1118
BspT104I TTCGAA 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 312
BsrBI CCGCTC 1 cut(s) 375
BsrDI GCAATG 2 cut(s) 622, 1083
BsrGI TGTACA 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 3 cut(s) 772, 1110, 1138
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 3 cut(s) 20, 247, 466
BstAUI TGTACA 1 cut(s) 15
BstBAI YACGTR 1 cut(s) 840
BstBI TTCGAA 1 cut(s) 365
BstC8I GCNNGC 2 cut(s) 977, 999
BstDEI CTNAG 4 cut(s) 157, 393, 781, 1235
BstDSI CCRYGG 1 cut(s) 61
BstF5I GGATG 3 cut(s) 203, 421, 1101
BstFNI CGCG 2 cut(s) 1067, 1108
BstKTI GATC 3 cut(s) 775, 1113, 1141
BstMBI GATC 3 cut(s) 772, 1110, 1138
BstMWI GCNNNNNNNGC 2 cut(s) 109, 340
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 1214
BstSLI GKGCMC 1 cut(s) 315
BstUI CGCG 2 cut(s) 1067, 1108
BstV1I GCAGC 1 cut(s) 670
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 1138
BstYI RGATCY 1 cut(s) 1138
BsuI GTATCC 1 cut(s) 1234
BsuRI GGCC 2 cut(s) 129, 334
BtgI CCRYGG 1 cut(s) 61
BtsCI GGATG 3 cut(s) 203, 421, 1101
BtsIMutI CAGTG 1 cut(s) 1120
BtuMI TCGCGA 1 cut(s) 1067
BveI ACCTGC 1 cut(s) 1221
Cac8I GCNNGC 2 cut(s) 977, 999
CciI TCATGA 1 cut(s) 859
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 3 cut(s) 16, 403, 621
CviAII CATG 4 cut(s) 270, 860, 1038, 1153
CviQI GTAC 3 cut(s) 16, 403, 621
DdeI CTNAG 4 cut(s) 157, 393, 781, 1235
DpnI GATC 3 cut(s) 774, 1112, 1140
DpnII GATC 3 cut(s) 772, 1110, 1138
Ecl136II GAGCTC 2 cut(s) 123, 156
Eco147I AGGCCT 1 cut(s) 334
Eco24I GRGCYC 2 cut(s) 125, 158
Eco32I GATATC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 169
Eco53kI GAGCTC 2 cut(s) 123, 156
EcoICRI GAGCTC 2 cut(s) 123, 156
EcoRI GAATTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 72
EcoRV GATATC 1 cut(s) 215
EcoT38I GRGCYC 2 cut(s) 125, 158
FaeI CATG 4 cut(s) 273, 863, 1041, 1156
FaiI YATR 7 cut(s) 271, 752, 818, 861, 1004, 1039, 1154
FaqI GGGAC 2 cut(s) 368, 857
FatI CATG 4 cut(s) 269, 859, 1037, 1152
Fnu4HI GCNGC 1 cut(s) 684
FokI GGATG 3 cut(s) 210, 408, 1108
FriOI GRGCYC 2 cut(s) 125, 158
Fsp4HI GCNGC 1 cut(s) 684
FspBI CTAG 2 cut(s) 636, 651
GluI GCNGC 1 cut(s) 684
GsuI CTGGAG 1 cut(s) 522
HaeIII GGCC 2 cut(s) 129, 334
HapII CCGG 1 cut(s) 770
Hin1II CATG 4 cut(s) 273, 863, 1041, 1156
HincII GTYRAC 2 cut(s) 178, 568
HindII GTYRAC 2 cut(s) 178, 568
HindIII AAGCTT 2 cut(s) 778, 1010
HinfI GANTC 7 cut(s) 77, 356, 485, 546, 707, 1028, 1069
HpaII CCGG 1 cut(s) 770
HphI GGTGA 3 cut(s) 200, 681, 1064
Hpy166II GTNNAC 5 cut(s) 178, 568, 767, 809, 1271
Hpy188I TCNGA 4 cut(s) 40, 153, 396, 585
Hpy188III TCNNGA 5 cut(s) 702, 711, 860, 1025, 1066
Hpy8I GTNNAC 5 cut(s) 178, 568, 767, 809, 1271
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 3 cut(s) 20, 247, 466
HpyCH4IV ACGT 3 cut(s) 564, 715, 839
HpyCH4V TGCA 8 cut(s) 278, 686, 854, 914, 1088, 1135, 1216, 1257
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 340
HpyF3I CTNAG 4 cut(s) 157, 393, 781, 1235
HpySE526I ACGT 3 cut(s) 564, 715, 839
Hsp92II CATG 4 cut(s) 273, 863, 1041, 1156
Kzo9I GATC 3 cut(s) 772, 1110, 1138
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 1 cut(s) 670
LweI GCATC 4 cut(s) 181, 583, 695, 984
MaeI CTAG 2 cut(s) 636, 651
MaeII ACGT 3 cut(s) 564, 715, 839
MaeIII GTNAC 3 cut(s) 105, 377, 950
MalI GATC 3 cut(s) 774, 1112, 1140
MbiI CCGCTC 1 cut(s) 375
MboI GATC 3 cut(s) 772, 1110, 1138
MboII GAAGA 4 cut(s) 27, 67, 541, 1113
MflI RGATCY 1 cut(s) 1138
MhlI GDGCHC 4 cut(s) 125, 158, 315, 1203
MluCI AATT 8 cut(s) 68, 385, 665, 726, 735, 847, 1044, 1282
MlyI GAGTC 3 cut(s) 350, 716, 1063
MmeI TCCRAC 3 cut(s) 118, 481, 1164
MseI TTAA 5 cut(s) 30, 560, 1206, 1227, 1285
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 1 cut(s) 770
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 2 cut(s) 1067, 1108
MwoI GCNNNNNNNGC 2 cut(s) 109, 340
NdeII GATC 3 cut(s) 772, 1110, 1138
NlaIII CATG 4 cut(s) 273, 863, 1041, 1156
NlaIV GGNNCC 2 cut(s) 298, 314
NmuCI GTSAC 1 cut(s) 105
NruI TCGCGA 1 cut(s) 1067
NspV TTCGAA 1 cut(s) 365
PagI TCATGA 1 cut(s) 859
PceI AGGCCT 1 cut(s) 334
PcsI WCGNNNNNNNCGW 2 cut(s) 217, 721
PfeI GAWTC 4 cut(s) 77, 485, 546, 1028
PflMI CCANNNNNTGG 1 cut(s) 931
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 1 cut(s) 685
PleI GAGTC 3 cut(s) 350, 715, 1063
PpsI GAGTC 3 cut(s) 350, 715, 1063
Ppu21I YACGTR 1 cut(s) 840
Psp124BI GAGCTC 2 cut(s) 125, 158
Psp1406I AACGTT 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 298, 314
PspPI GGNCC 1 cut(s) 169
PstI CTGCAG 1 cut(s) 1218
PsuI RGATCY 1 cut(s) 1138
PvuII CAGCTG 1 cut(s) 542
RruI TCGCGA 1 cut(s) 1067
RsaI GTAC 3 cut(s) 17, 404, 622
RsaNI GTAC 3 cut(s) 16, 403, 621
SacI GAGCTC 2 cut(s) 125, 158
SaqAI TTAA 5 cut(s) 30, 560, 1206, 1227, 1285
SatI GCNGC 1 cut(s) 684
Sau3AI GATC 3 cut(s) 772, 1110, 1138
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 3 cut(s) 350, 716, 1063
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 4 cut(s) 125, 158, 315, 1203
SfaNI GCATC 4 cut(s) 181, 583, 695, 984
SfcI CTRYAG 1 cut(s) 1214
SfuI TTCGAA 1 cut(s) 365
SinI GGWCC 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
Sse9I AATT 8 cut(s) 68, 385, 665, 726, 735, 847, 1044, 1282
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 4 cut(s) 136, 375, 946, 1108
SspMI CTAG 2 cut(s) 636, 651
SstI GAGCTC 2 cut(s) 125, 158
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 3 cut(s) 20, 247, 466
TaiI ACGT 3 cut(s) 567, 718, 842
TaqI TCGA 5 cut(s) 211, 220, 365, 488, 724
TaqII GACCGA 1 cut(s) 132
TasI AATT 8 cut(s) 68, 385, 665, 726, 735, 847, 1044, 1282
TatI WGTACW 1 cut(s) 15
TfiI GAWTC 4 cut(s) 77, 485, 546, 1028
Tru1I TTAA 5 cut(s) 30, 560, 1206, 1227, 1285
Tru9I TTAA 5 cut(s) 30, 560, 1206, 1227, 1285
TscAI CASTG 1 cut(s) 1120
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 1 cut(s) 683
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 6 cut(s) 69, 250, 255, 410, 602, 848
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 1 cut(s) 1120
Van91I CCANNNNNTGG 1 cut(s) 931
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 3 cut(s) 68, 385, 1044
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XspI CTAG 2 cut(s) 636, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.