RLG00000030757

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006948
Physical Location & Seq
Reverse (-)
66938518 .. 66940737
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030757

Sequence Viewer

Length: 1299 bp
ATGAGTAGCCTTTTGTACAGTCCAAACTTTAAGTCTCCAGAGGCAGAGTTTAGGAAGAACCACGCAGAATTCTTGGATTCATCACATGGTTTCCAACAACAACAGTCACAGCAGCAGCAACAGAGCTCTGGCCTAATGCGGTATCGGTCTGCTCCGAGCTCAGTTTTGCTGGACCTTGTTGACAACAATGGTGGTGCTGGATGTGAGGATTTTCGAGATTTTCGATATCCTCGACCTTCCAGCCCCGAAGTGGAAACCGTCTTGGCAAGGTTCATTTCATCATGTAATGCACCTGATACTGACGATGGTTCCAATAATAGTACGCACCATCTGTTCCAAGAAAGGCCTGTGAAGCAAGAAGCAGGGGACTCTGTTTCGAAACAGAGCGGTTACTCAAATTCTCCTCACATGATGTACCAGACTCAGCAAGTTCATCCTTTGGATAATGCCTCCTCCTTTGGTGCTTTCAAATCTACCGTCTTGGAGAGCTCGATGGAATCGAAAATGGGTGTTGGAAATCGCTCTAATCTTGTTAGACAAAGTAGCTCTCCAGCTGGATTCTTCCCCAACTTAAACGTTGACAATGGCTTCAATCTGATGAAAGATGCTTCAAGTTTTGGAGTAGGCAATGGTACAATTGGAGAAGCCAGTCCATCAACTTCTAGGTTGAATACCCAATTTAGTTTCTCCTCTGCTGCATCAACTCCATACTCAAGAGAGTCCAGACGTTTGCCTCGAATTGCTGAAATTGAGAACAGAAACATAGGAGAGGTTAGTGAACCGGATCAAAGATTAGGAAATGCTACTAATGGTAGCAGTTCACATTACATACCTGACTATTCAAATGATACGTGGGACAATTCTGCATTTCATGACCTCAAAAGAGGCAGAGATAATGATGGGAACAAGTTTTCTACTACGACTGCATTCGACACCCAGAATGTAGATTTTGGACACCGCAGTTACGCTCTTACTCATCATAAGAGCTTGCCTAAACATTTTGAGATGCCTGCTATGGAGAAGCTTCTACATTTTCAAGATTCCATTCCATGTAAAATTCGTGCCAAAAGAGGCTTCGCGACTCACCCACGAAGCATTGCAGAGAGGATGAGAAGGACGCGGATCAGTGAAAGAATGAGGAAACTGCAAGATCTTTTCCCAAACATGGACAAGCAAATAAACACAGCAGAAATGTTGGAGTTGGCAGTTGAGCACATTAAAGACCTGCAGAAACAGGTTAAGACACTCAAGGATGCAAAGGCGAACTGTGGTTGTTCAAGTAAACAGAAACACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

433

Amino Acids

48.35

Weight (kDa)

8.48

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 365 - 410 2.5e-08 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1233
AccBSI CCGCTC 1 cut(s) 387
AccII CGCG 2 cut(s) 1079, 1120
AciI CCGC 4 cut(s) 139, 387, 958, 1120
AclI AACGTT 1 cut(s) 576
AclWI GGATC 2 cut(s) 792, 1130
AcsI RAATTY 3 cut(s) 68, 397, 1056
AfaI GTAC 4 cut(s) 17, 322, 416, 634
AfiI CCNNNNNNNGG 2 cut(s) 250, 1165
AgsI TTSAA 7 cut(s) 469, 592, 612, 670, 843, 1037, 1278
AjuI GAANNNNNNNTTGG 2 cut(s) 1058, 1090
AluBI AGCT 7 cut(s) 126, 159, 489, 546, 554, 987, 1024
AluI AGCT 7 cut(s) 126, 159, 489, 546, 554, 987, 1024
Alw21I GWGCWC 4 cut(s) 128, 161, 491, 1215
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 2 cut(s) 792, 1130
AoxI GGCC 2 cut(s) 130, 344
ApeKI GCWGC 3 cut(s) 112, 115, 695
ApoI RAATTY 3 cut(s) 68, 397, 1056
ArsI GACNNNNNNTTYG 4 cut(s) 17, 49, 462, 494
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 1076
AsuII TTCGAA 1 cut(s) 377
AvaII GGWCC 1 cut(s) 172
BanII GRGCYC 3 cut(s) 128, 161, 491
Bbv12I GWGCWC 4 cut(s) 128, 161, 491, 1215
BbvI GCAGC 3 cut(s) 124, 127, 682
BccI CCATC 5 cut(s) 299, 336, 487, 661, 893
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 663
BfmI CTRYAG 1 cut(s) 1226
BfuAI ACCTGC 1 cut(s) 1233
BglII AGATCT 1 cut(s) 1150
BisI GCNGC 3 cut(s) 113, 116, 696
BlsI GCNGC 3 cut(s) 114, 117, 697
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 310
BmsI GCATC 4 cut(s) 595, 707, 996, 1243
BpmI CTGGAG 2 cut(s) 21, 534
Bpu14I TTCGAA 1 cut(s) 377
BpuEI CTTGAG 2 cut(s) 697, 1232
BsaAI YACGTR 1 cut(s) 852
BsaWI WCCGGW 1 cut(s) 781
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 1165
Bse1I ACTGG 1 cut(s) 648
Bse3DI GCAATG 2 cut(s) 634, 1095
BseGI GGATG 4 cut(s) 206, 433, 1113, 1258
BseLI CCNNNNNNNGG 2 cut(s) 250, 1165
BseMI GCAATG 2 cut(s) 634, 1095
BseMII CTCAG 2 cut(s) 174, 437
BseNI ACTGG 1 cut(s) 648
BseRI GAGGAG 3 cut(s) 393, 442, 679
BseXI GCAGC 3 cut(s) 124, 127, 682
Bsh1236I CGCG 2 cut(s) 1079, 1120
BshFI GGCC 2 cut(s) 132, 346
BsiHKAI GWGCWC 4 cut(s) 128, 161, 491, 1215
BsiSI CCGG 1 cut(s) 782
BslFI GGGAC 2 cut(s) 380, 869
BslI CCNNNNNNNGG 2 cut(s) 250, 1165
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 2 cut(s) 380, 869
BsmI GAATGC 1 cut(s) 926
BsnI GGCC 2 cut(s) 132, 346
Bsp119I TTCGAA 1 cut(s) 377
Bsp1286I GDGCHC 4 cut(s) 128, 161, 491, 1215
Bsp1407I TGTACA 1 cut(s) 15
Bsp143I GATC 3 cut(s) 784, 1122, 1150
Bsp68I TCGCGA 1 cut(s) 1079
BspACI CCGC 4 cut(s) 139, 387, 958, 1120
BspANI GGCC 2 cut(s) 132, 346
BspCNI CTCAG 2 cut(s) 173, 436
BspFNI CGCG 2 cut(s) 1079, 1120
BspHI TCATGA 1 cut(s) 871
BspLI GGNNCC 1 cut(s) 310
BspMAI CTGCAG 1 cut(s) 1230
BspMI ACCTGC 1 cut(s) 1233
BspPI GGATC 2 cut(s) 792, 1130
BspT104I TTCGAA 1 cut(s) 377
BsrBI CCGCTC 1 cut(s) 387
BsrDI GCAATG 2 cut(s) 634, 1095
BsrGI TGTACA 1 cut(s) 15
BsrI ACTGG 1 cut(s) 648
BssMI GATC 3 cut(s) 784, 1122, 1150
Bst4CI ACNGT 5 cut(s) 20, 105, 259, 478, 1268
BstAUI TGTACA 1 cut(s) 15
BstBAI YACGTR 1 cut(s) 852
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 989, 1011
BstDEI CTNAG 2 cut(s) 160, 423
BstF5I GGATG 4 cut(s) 206, 433, 1113, 1258
BstFNI CGCG 2 cut(s) 1079, 1120
BstKTI GATC 3 cut(s) 787, 1125, 1153
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 3 cut(s) 784, 1122, 1150
BstMWI GCNNNNNNNGC 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 1226
BstUI CGCG 2 cut(s) 1079, 1120
BstV1I GCAGC 3 cut(s) 124, 127, 682
BstX2I RGATCY 1 cut(s) 1150
BstYI RGATCY 1 cut(s) 1150
BsuRI GGCC 2 cut(s) 132, 346
BtsCI GGATG 4 cut(s) 206, 433, 1113, 1258
BtsIMutI CAGTG 1 cut(s) 1132
BtuMI TCGCGA 1 cut(s) 1079
BveI ACCTGC 1 cut(s) 1233
Cac8I GCNNGC 2 cut(s) 989, 1011
CciI TCATGA 1 cut(s) 871
Cfr13I GGNCC 1 cut(s) 172
CseI GACGC 1 cut(s) 1126
Csp6I GTAC 4 cut(s) 16, 321, 415, 633
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 6 cut(s) 86, 282, 409, 872, 1050, 1165
CviQI GTAC 4 cut(s) 16, 321, 415, 633
DdeI CTNAG 2 cut(s) 160, 423
DpnI GATC 3 cut(s) 786, 1124, 1152
DpnII GATC 3 cut(s) 784, 1122, 1150
Ecl136II GAGCTC 3 cut(s) 126, 159, 489
Eco147I AGGCCT 1 cut(s) 346
Eco24I GRGCYC 3 cut(s) 128, 161, 491
Eco32I GATATC 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 172
Eco53kI GAGCTC 3 cut(s) 126, 159, 489
EcoICRI GAGCTC 3 cut(s) 126, 159, 489
EcoRI GAATTC 1 cut(s) 68
EcoRV GATATC 1 cut(s) 227
EcoT38I GRGCYC 3 cut(s) 128, 161, 491
FaeI CATG 6 cut(s) 89, 285, 412, 875, 1053, 1168
FaqI GGGAC 2 cut(s) 380, 869
FatI CATG 6 cut(s) 85, 281, 408, 871, 1049, 1164
Fnu4HI GCNGC 3 cut(s) 113, 116, 696
FokI GGATG 4 cut(s) 213, 420, 1120, 1265
FriOI GRGCYC 3 cut(s) 128, 161, 491
Fsp4HI GCNGC 3 cut(s) 113, 116, 696
FspBI CTAG 1 cut(s) 663
GluI GCNGC 3 cut(s) 113, 116, 696
GsuI CTGGAG 2 cut(s) 21, 534
HaeIII GGCC 2 cut(s) 132, 346
HapII CCGG 1 cut(s) 782
HgaI GACGC 1 cut(s) 1126
Hin1II CATG 6 cut(s) 89, 285, 412, 875, 1053, 1168
HincII GTYRAC 2 cut(s) 181, 580
HindII GTYRAC 2 cut(s) 181, 580
HindIII AAGCTT 1 cut(s) 1022
HinfI GANTC 8 cut(s) 77, 368, 421, 497, 558, 719, 1040, 1081
HpaII CCGG 1 cut(s) 782
HphI GGTGA 1 cut(s) 1076
Hpy166II GTNNAC 5 cut(s) 181, 580, 779, 821, 1283
Hpy188I TCNGA 2 cut(s) 156, 597
Hpy188III TCNNGA 7 cut(s) 38, 215, 714, 723, 872, 1037, 1078
Hpy8I GTNNAC 5 cut(s) 181, 580, 779, 821, 1283
HpyAV CCTTC 2 cut(s) 246, 1107
HpyCH4III ACNGT 5 cut(s) 20, 105, 259, 478, 1268
HpyCH4IV ACGT 3 cut(s) 576, 727, 851
HpyCH4V TGCA 8 cut(s) 290, 698, 866, 926, 1100, 1147, 1228, 1256
HpyF10VI GCNNNNNNNGC 1 cut(s) 352
HpyF3I CTNAG 2 cut(s) 160, 423
HpySE526I ACGT 3 cut(s) 576, 727, 851
Hsp92II CATG 6 cut(s) 89, 285, 412, 875, 1053, 1168
Kzo9I GATC 3 cut(s) 784, 1122, 1150
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 3 cut(s) 124, 127, 682
LweI GCATC 4 cut(s) 595, 707, 996, 1243
MaeI CTAG 1 cut(s) 663
MaeII ACGT 3 cut(s) 576, 727, 851
MaeIII GTNAC 3 cut(s) 105, 389, 962
MalI GATC 3 cut(s) 786, 1124, 1152
MbiI CCGCTC 1 cut(s) 387
MboI GATC 3 cut(s) 784, 1122, 1150
MboII GAAGA 2 cut(s) 67, 553
MfeI CAATTG 1 cut(s) 636
MflI RGATCY 1 cut(s) 1150
MhlI GDGCHC 4 cut(s) 128, 161, 491, 1215
MluCI AATT 9 cut(s) 68, 397, 636, 677, 738, 747, 859, 1056, 1294
MlyI GAGTC 4 cut(s) 362, 415, 728, 1075
MmeI TCCRAC 3 cut(s) 118, 493, 1176
MseI TTAA 5 cut(s) 30, 572, 1218, 1239, 1297
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 1 cut(s) 782
MunI CAATTG 1 cut(s) 636
Mva1269I GAATGC 1 cut(s) 926
MvnI CGCG 2 cut(s) 1079, 1120
MwoI GCNNNNNNNGC 1 cut(s) 352
NdeII GATC 3 cut(s) 784, 1122, 1150
NlaIII CATG 6 cut(s) 89, 285, 412, 875, 1053, 1168
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 105
NruI TCGCGA 1 cut(s) 1079
NspV TTCGAA 1 cut(s) 377
PagI TCATGA 1 cut(s) 871
PceI AGGCCT 1 cut(s) 346
PcsI WCGNNNNNNNCGW 4 cut(s) 220, 229, 497, 733
PctI GAATGC 1 cut(s) 926
PfeI GAWTC 4 cut(s) 77, 497, 558, 1040
PkrI GCNGC 3 cut(s) 114, 117, 697
PleI GAGTC 4 cut(s) 362, 415, 727, 1075
PpsI GAGTC 4 cut(s) 362, 415, 727, 1075
Ppu21I YACGTR 1 cut(s) 852
Psp124BI GAGCTC 3 cut(s) 128, 161, 491
Psp1406I AACGTT 1 cut(s) 576
PspN4I GGNNCC 1 cut(s) 310
PspPI GGNCC 1 cut(s) 172
PstI CTGCAG 1 cut(s) 1230
PsuI RGATCY 1 cut(s) 1150
PvuII CAGCTG 1 cut(s) 554
RruI TCGCGA 1 cut(s) 1079
RsaI GTAC 4 cut(s) 17, 322, 416, 634
RsaNI GTAC 4 cut(s) 16, 321, 415, 633
SacI GAGCTC 3 cut(s) 128, 161, 491
SaqAI TTAA 5 cut(s) 30, 572, 1218, 1239, 1297
SatI GCNGC 3 cut(s) 113, 116, 696
Sau3AI GATC 3 cut(s) 784, 1122, 1150
Sau96I GGNCC 1 cut(s) 172
SchI GAGTC 4 cut(s) 362, 415, 728, 1075
SduI GDGCHC 4 cut(s) 128, 161, 491, 1215
SfaNI GCATC 4 cut(s) 595, 707, 996, 1243
SfcI CTRYAG 1 cut(s) 1226
SfuI TTCGAA 1 cut(s) 377
SinI GGWCC 1 cut(s) 172
SmlI CTYRAG 2 cut(s) 712, 1247
SmoI CTYRAG 2 cut(s) 712, 1247
Sse9I AATT 9 cut(s) 68, 397, 636, 677, 738, 747, 859, 1056, 1294
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 4 cut(s) 139, 387, 958, 1120
SspMI CTAG 1 cut(s) 663
SstI GAGCTC 3 cut(s) 128, 161, 491
StuI AGGCCT 1 cut(s) 346
TaaI ACNGT 5 cut(s) 20, 105, 259, 478, 1268
TaiI ACGT 3 cut(s) 579, 730, 854
TaqI TCGA 8 cut(s) 214, 223, 232, 377, 491, 500, 736, 930
TaqII GACCGA 1 cut(s) 135
TasI AATT 9 cut(s) 68, 397, 636, 677, 738, 747, 859, 1056, 1294
TatI WGTACW 1 cut(s) 15
TfiI GAWTC 4 cut(s) 77, 497, 558, 1040
Tru1I TTAA 5 cut(s) 30, 572, 1218, 1239, 1297
Tru9I TTAA 5 cut(s) 30, 572, 1218, 1239, 1297
TscAI CASTG 1 cut(s) 1132
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 3 cut(s) 112, 115, 695
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 6 cut(s) 69, 262, 267, 422, 614, 860
TspRI CASTG 1 cut(s) 1132
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 3 cut(s) 68, 397, 1056
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XspI CTAG 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.