Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009491

Physical Location & Seq

Genomic Coordinates Reverse (-)

1353894 .. 1360274

Gene Structure 6381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00890.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCCAAACGGGTTCTCTGCAAGTTCTTTGCACATGGAGCCTGTTTAAAAGGGGAGCACTGCGAGTTTTCACATGATTGGAAGGATCCATCAAATAATATATGTACCTTTTATCAGAAAGGAGCTTGTGCCTTTGGTAGTCGATGCAGATATGAACATGTTAAAGCTTCTCGAGCTCAGTCATCTGGTTCGTCTTCATCAGCAAATTCTCATCAGTCTCTGGCTTTTGATTCTGGTCTCGCTCATCCCTCAAGAACTGCATCAAGTGGAGTTGCTTTAGTCCCGGGCACTCTTTCTGAACTATCTGCATTTAGTAATCCTTTTCTACCTCCCCCTAAACCTGCATGGAGTGATTCTCTGGATGATGGTGATTTTGACCACAGTGAGGATAATGACGTGGGGGAAACTAGAAATGCTAGACCAGCCGATCGTGCTATCTGTTCATTTGCTGCAGCTGGTAATTGTCCTCGTGGAGAAAAATGCCCTCATGTTCATGGAGATATTTGCCCCAGTTGTGGAAAACATTGTTTGCATCCTTACAGACCTGTAGAAAGAGAGGAGCATATGAGGATGTGTGAGGAAAAGCACAAGCAACTTGAGGCACTAAAGCGTAGTCAAGAAATAGAATGCAGTGTTTGCCTGGAACGTGTTCTTTCAAAGCCCACAGTTGCCGAAAGAAAGTTCGGGATACTCTCAGAATGTGATCACCCTTTTTGCATATCTTGTATTCGAAACTGGCGCAGTAGCTCCCCAACATCTGGTATGGATGTCAATAGTGCATTGAGGGCTTGCCCAATATGTCGCAAGCTGTCATACTTTGTGATTCCAAGTGTCATATGGTATAACTCAAAAGAAGAGAAAGAGGAAATTGTTGACAGCTACAAGGCTCGGCTTAGATCAATTGATTGTAAGCACTTTGATTTTGGAAATGGGAACTGCCCATTTGGGACTAGCTGTTTTTATAAGCATGCATACCGGGATGGCCGTTTAGAAGAAGTTGTGCTGCGTCACCTTGGAAATGAAGATGGCCAGACCGTGATAGCTGCAGATATTAGGCTGTCAGACTTTCTTGGTGATTTGCGCATAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-CCCH zf-RING_2

Protein Analysis

364

Amino Acids

40.46

Weight (kDa)

7.2

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_4	PF18044	34 - 53	1.1e-06	CCCH-type zinc finger
zf-RING_2	PF13639	209 - 268	1.7e-06	Ring finger domain
zf-C3HC4	PF00097	210 - 267	2.5e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08505 AT3G08505 AT3G08505
fragaria_vesca	FvH4_7g00890 FvH4_7g00890 FvH4_7g00890
malus_domestica	MD02G1313900.v1.1 MD07G1008500.v1.1
prunus_persica	Prupe.2G011700_v2.0.a1 Prupe.2G011700_v2.0.a1
pyrus_communis	pycom02g26320 pycom07g00730
rosa_chinensis	RchiOBHm_Chr1g0315781
rosa_laevigata	RLG00000030733
rosa_multiflora	Rmu_sc0009816.1_g000006
rosa_roxburghii	Rroxscaffold_4G00331440
rosa_rugosa	Rorug01G0005500
rosa_samantha	Rh1AG016400 Rh1BG008800 Rh1CG013700 Rh1DG009500
rosa_wichuraiana	Rw1G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	963
Acc16I	TGCGCA	1 cut(s)	1082
Acc36I	ACCTGC	1 cut(s)	349
AccB7I	CCANNNNNTGG	1 cut(s)	758
AclWI	GGATC	2 cut(s)	80, 93
AcoI	YGGCCR	3 cut(s)	3, 982, 1027
AcsI	RAATTY	1 cut(s)	205
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	3 cut(s)	385, 515, 758
AflIII	ACRYGT	2 cut(s)	157, 646
AgsI	TTSAA	1 cut(s)	657
AjiI	CACGTC	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	639
AluBI	AGCT	9 cut(s)	125, 167, 176, 455, 747, 808, 879, 954, 1043
AluI	AGCT	9 cut(s)	125, 167, 176, 455, 747, 808, 879, 954, 1043
Alw21I	GWGCWC	2 cut(s)	60, 178
Alw26I	GTCTC	2 cut(s)	222, 242
AlwI	GGATC	2 cut(s)	80, 93
AlwNI	CAGNNNCTG	1 cut(s)	220
Ama87I	CYCGRG	2 cut(s)	171, 283
AoxI	GGCC	3 cut(s)	3, 982, 1027
ApeKI	GCWGC	4 cut(s)	449, 452, 1003, 1043
ApoI	RAATTY	1 cut(s)	205
Asp700I	GAANNNNTTC	1 cut(s)	648
AspLEI	GCGC	2 cut(s)	741, 1083
AsuC2I	CCSGG	3 cut(s)	284, 285, 977
AsuHPI	GGTGA	4 cut(s)	380, 698, 1001, 1085
AsuII	TTCGAA	1 cut(s)	730
AvaI	CYCGRG	2 cut(s)	171, 283
BaeGI	GKGCMC	1 cut(s)	290
BalI	TGGCCA	2 cut(s)	5, 1029
BamHI	GGATCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	2 cut(s)	60, 178
BbvI	GCAGC	4 cut(s)	436, 464, 990, 1030
BccI	CCATC	4 cut(s)	97, 359, 974, 1019
BceAI	ACGGC	1 cut(s)	969
BciT130I	CCWGG	1 cut(s)	641
BciVI	GTATCC	1 cut(s)	681
BclI	TGATCA	1 cut(s)	703
BcnI	CCSGG	3 cut(s)	284, 285, 977
BcoDI	GTCTC	2 cut(s)	222, 242
BfaI	CTAG	3 cut(s)	408, 417, 951
BfmI	CTRYAG	3 cut(s)	450, 546, 1044
BfuAI	ACCTGC	1 cut(s)	349
BfuI	GTATCC	1 cut(s)	681
BisI	GCNGC	4 cut(s)	450, 453, 1004, 1044
BlsI	GCNGC	4 cut(s)	451, 454, 1005, 1045
Bme1390I	CCNGG	4 cut(s)	284, 285, 641, 977
BmeT110I	CYCGRG	2 cut(s)	171, 283
BmgBI	CACGTC	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	40, 87
BmrFI	CCNGG	4 cut(s)	284, 285, 641, 977
BmrI	ACTGGG	1 cut(s)	504
BmsI	GCATC	3 cut(s)	134, 269, 541
BmuI	ACTGGG	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	186
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
Bpu14I	TTCGAA	1 cut(s)	730
BpuEI	CTTGAG	2 cut(s)	235, 617
BpuMI	CCSGG	3 cut(s)	284, 285, 977
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	283, 1012
Bsc4I	CCNNNNNNNGG	3 cut(s)	385, 515, 758
Bse1I	ACTGG	2 cut(s)	510, 740
BseBI	CCWGG	1 cut(s)	641
BseDI	CCNNGG	2 cut(s)	283, 1012
BseGI	GGATG	6 cut(s)	244, 367, 532, 576, 772, 985
BseLI	CCNNNNNNNGG	3 cut(s)	385, 515, 758
BseMII	CTCAG	2 cut(s)	191, 708
BseNI	ACTGG	2 cut(s)	510, 740
BseRI	GAGGAG	1 cut(s)	572
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	4 cut(s)	436, 464, 990, 1030
Bsh1285I	CGRYCG	1 cut(s)	430
BshFI	GGCC	3 cut(s)	5, 984, 1029
BsiEI	CGRYCG	1 cut(s)	430
BsiHKAI	GWGCWC	2 cut(s)	60, 178
BsiHKCI	CYCGRG	2 cut(s)	171, 283
BsiSI	CCGG	2 cut(s)	284, 976
BslFI	GGGAC	2 cut(s)	266, 961
BslI	CCNNNNNNNGG	3 cut(s)	385, 515, 758
BsmAI	GTCTC	2 cut(s)	222, 242
BsmFI	GGGAC	2 cut(s)	266, 961
BsmI	GAATGC	1 cut(s)	632
BsnI	GGCC	3 cut(s)	5, 984, 1029
Bso31I	GGTCTC	1 cut(s)	242
BsoBI	CYCGRG	2 cut(s)	171, 283
Bsp119I	TTCGAA	1 cut(s)	730
Bsp1286I	GDGCHC	3 cut(s)	60, 178, 290
Bsp143I	GATC	4 cut(s)	85, 427, 703, 896
BspANI	GGCC	3 cut(s)	5, 984, 1029
BspCNI	CTCAG	2 cut(s)	190, 707
BspLI	GGNNCC	2 cut(s)	40, 87
BspMAI	CTGCAG	2 cut(s)	454, 1048
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	80, 93
BspT104I	TTCGAA	1 cut(s)	730
BspTNI	GGTCTC	1 cut(s)	242
BsrI	ACTGG	2 cut(s)	510, 740
BssECI	CCNNGG	2 cut(s)	283, 1012
BssMI	GATC	4 cut(s)	85, 427, 703, 896
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	1012
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	641
Bst4CI	ACNGT	3 cut(s)	383, 667, 1036
Bst6I	CTCTTC	1 cut(s)	849
BstAPI	GCANNNNNTGC	1 cut(s)	636
BstBI	TTCGAA	1 cut(s)	730
BstC8I	GCNNGC	3 cut(s)	790, 806, 969
BstDEI	CTNAG	3 cut(s)	177, 694, 893
BstF5I	GGATG	6 cut(s)	244, 367, 532, 576, 772, 985
BstHHI	GCGC	2 cut(s)	741, 1083
BstKTI	GATC	4 cut(s)	88, 430, 706, 899
BstMAI	GTCTC	2 cut(s)	222, 242
BstMBI	GATC	4 cut(s)	85, 427, 703, 896
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 173, 422, 431, 636, 785
BstNI	CCWGG	1 cut(s)	641
BstNSI	RCATGY	2 cut(s)	161, 971
BstSCI	CCNGG	4 cut(s)	282, 283, 639, 975
BstSFI	CTRYAG	3 cut(s)	450, 546, 1044
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	4 cut(s)	436, 464, 990, 1030
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	681
BsuRI	GGCC	3 cut(s)	5, 984, 1029
BtrI	CACGTC	1 cut(s)	397
BtsCI	GGATG	6 cut(s)	244, 367, 532, 576, 772, 985
BtsI	GCAGTG	2 cut(s)	58, 637
BtsIMutI	CAGTG	3 cut(s)	58, 388, 637
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	3 cut(s)	790, 806, 969
CaiI	CAGNNNCTG	1 cut(s)	220
CfoI	GCGC	2 cut(s)	741, 1083
Cfr9I	CCCGGG	1 cut(s)	283
CseI	GACGC	1 cut(s)	995
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	7 cut(s)	35, 74, 158, 345, 488, 494, 968
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	3 cut(s)	177, 694, 893
DpnI	GATC	4 cut(s)	87, 429, 705, 898
DpnII	GATC	4 cut(s)	85, 427, 703, 896
DraI	TTTAAA	1 cut(s)	48
EaeI	YGGCCR	3 cut(s)	3, 982, 1027
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Ecl136II	GAGCTC	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	1012
Eco24I	GRGCYC	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	176
Eco88I	CYCGRG	2 cut(s)	171, 283
EcoICRI	GAGCTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	639
EcoT14I	CCWWGG	1 cut(s)	1012
EcoT22I	ATGCAT	1 cut(s)	973
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	1012
FaeI	CATG	7 cut(s)	38, 77, 161, 348, 491, 497, 971
FaqI	GGGAC	2 cut(s)	266, 961
FatI	CATG	7 cut(s)	34, 73, 157, 344, 487, 493, 967
FauNDI	CATATG	2 cut(s)	564, 836
FbaI	TGATCA	1 cut(s)	703
Fnu4HI	GCNGC	4 cut(s)	450, 453, 1004, 1044
FokI	GGATG	6 cut(s)	231, 374, 519, 583, 779, 992
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	4 cut(s)	450, 453, 1004, 1044
FspBI	CTAG	3 cut(s)	408, 417, 951
FspI	TGCGCA	1 cut(s)	1082
GlaI	GCGC	2 cut(s)	740, 1082
GluI	GCNGC	4 cut(s)	450, 453, 1004, 1044
HaeIII	GGCC	3 cut(s)	5, 984, 1029
HapII	CCGG	2 cut(s)	284, 976
HgaI	GACGC	1 cut(s)	995
HhaI	GCGC	2 cut(s)	741, 1083
Hin1II	CATG	7 cut(s)	38, 77, 161, 348, 491, 497, 971
Hin6I	GCGC	2 cut(s)	739, 1081
HinP1I	GCGC	2 cut(s)	739, 1081
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	3 cut(s)	230, 353, 823
HpaII	CCGG	2 cut(s)	284, 976
HphI	GGTGA	4 cut(s)	380, 698, 1001, 1085
Hpy166II	GTNNAC	1 cut(s)	874
Hpy188I	TCNGA	4 cut(s)	117, 298, 697, 1063
Hpy188III	TCNNGA	5 cut(s)	171, 252, 359, 617, 685
Hpy8I	GTNNAC	1 cut(s)	874
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	3 cut(s)	383, 667, 1036
HpyCH4IV	ACGT	2 cut(s)	396, 646
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 173, 422, 431, 636, 785
HpyF3I	CTNAG	3 cut(s)	177, 694, 893
HpySE526I	ACGT	2 cut(s)	396, 646
Hsp92II	CATG	7 cut(s)	38, 77, 161, 348, 491, 497, 971
HspAI	GCGC	2 cut(s)	739, 1081
Ksp22I	TGATCA	1 cut(s)	703
Kzo9I	GATC	4 cut(s)	85, 427, 703, 896
LmnI	GCTCC	5 cut(s)	38, 55, 122, 559, 752
Lsp1109I	GCAGC	4 cut(s)	436, 464, 990, 1030
LweI	GCATC	3 cut(s)	134, 269, 541
MaeI	CTAG	3 cut(s)	408, 417, 951
MaeII	ACGT	2 cut(s)	396, 646
MaeIII	GTNAC	1 cut(s)	1007
MalI	GATC	4 cut(s)	87, 429, 705, 898
MboI	GATC	4 cut(s)	85, 427, 703, 896
MboII	GAAGA	4 cut(s)	186, 866, 1004, 1034
MfeI	CAATTG	1 cut(s)	900
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	3 cut(s)	60, 178, 290
MlsI	TGGCCA	2 cut(s)	5, 1029
MluCI	AATT	4 cut(s)	205, 460, 867, 900
MluNI	TGGCCA	2 cut(s)	5, 1029
Mox20I	TGGCCA	2 cut(s)	5, 1029
Mph1103I	ATGCAT	1 cut(s)	973
MroXI	GAANNNNTTC	1 cut(s)	648
MscI	TGGCCA	2 cut(s)	5, 1029
MseI	TTAA	2 cut(s)	47, 162
MslI	CAYNNNNRTG	1 cut(s)	492
Msp20I	TGGCCA	2 cut(s)	5, 1029
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	2 cut(s)	284, 976
MspR9I	CCNGG	4 cut(s)	284, 285, 641, 977
MunI	CAATTG	1 cut(s)	900
Mva1269I	GAATGC	1 cut(s)	632
MvaI	CCWGG	1 cut(s)	641
MwoI	GCNNNNNNNGC	6 cut(s)	38, 173, 422, 431, 636, 785
NciI	CCSGG	3 cut(s)	284, 285, 977
NdeI	CATATG	2 cut(s)	564, 836
NdeII	GATC	4 cut(s)	85, 427, 703, 896
NlaIII	CATG	7 cut(s)	38, 77, 161, 348, 491, 497, 971
NlaIV	GGNNCC	2 cut(s)	40, 87
NmeAIII	GCCGAG	1 cut(s)	868
NmuCI	GTSAC	1 cut(s)	1007
NsbI	TGCGCA	1 cut(s)	1082
NsiI	ATGCAT	1 cut(s)	973
NspI	RCATGY	2 cut(s)	161, 971
NspV	TTCGAA	1 cut(s)	730
PaeI	GCATGC	1 cut(s)	971
PaeR7I	CTCGAG	1 cut(s)	171
PciI	ACATGT	1 cut(s)	157
PctI	GAATGC	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	3 cut(s)	230, 353, 823
PflMI	CCANNNNNTGG	1 cut(s)	758
PkrI	GCNGC	4 cut(s)	451, 454, 1005, 1045
Ple19I	CGATCG	1 cut(s)	430
PscI	ACATGT	1 cut(s)	157
PsiI	TTATAA	1 cut(s)	963
Psp124BI	GAGCTC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	639
PspN4I	GGNNCC	2 cut(s)	40, 87
PstI	CTGCAG	2 cut(s)	454, 1048
PstNI	CAGNNNCTG	1 cut(s)	220
PsuI	RGATCY	1 cut(s)	85
PvuI	CGATCG	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	492
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	47, 162
SatI	GCNGC	4 cut(s)	450, 453, 1004, 1044
Sau3AI	GATC	4 cut(s)	85, 427, 703, 896
ScrFI	CCNGG	4 cut(s)	284, 285, 641, 977
SduI	GDGCHC	3 cut(s)	60, 178, 290
SfaNI	GCATC	3 cut(s)	134, 269, 541
SfcI	CTRYAG	3 cut(s)	450, 546, 1044
Sfr274I	CTCGAG	1 cut(s)	171
SfuI	TTCGAA	1 cut(s)	730
SlaI	CTCGAG	1 cut(s)	171
SmaI	CCCGGG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	3 cut(s)	171, 250, 596
SmoI	CTYRAG	3 cut(s)	171, 250, 596
SphI	GCATGC	1 cut(s)	971
Sse9I	AATT	4 cut(s)	205, 460, 867, 900
SspMI	CTAG	3 cut(s)	408, 417, 951
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	4 cut(s)	282, 283, 639, 975
StyI	CCWWGG	1 cut(s)	1012
TaaI	ACNGT	3 cut(s)	383, 667, 1036
TaiI	ACGT	2 cut(s)	399, 649
TaqI	TCGA	3 cut(s)	142, 172, 730
TasI	AATT	4 cut(s)	205, 460, 867, 900
TfiI	GAWTC	3 cut(s)	230, 353, 823
Tru1I	TTAA	2 cut(s)	47, 162
Tru9I	TTAA	2 cut(s)	47, 162
TscAI	CASTG	3 cut(s)	65, 388, 637
TseFI	GTSAC	1 cut(s)	1007
TseI	GCWGC	4 cut(s)	449, 452, 1003, 1043
Tsp45I	GTSAC	1 cut(s)	1007
TspDTI	ATGAA	5 cut(s)	168, 186, 432, 482, 1035
TspMI	CCCGGG	1 cut(s)	283
TspRI	CASTG	3 cut(s)	65, 388, 637
Van91I	CCANNNNNTGG	1 cut(s)	758
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	2 cut(s)	161, 971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	834
XhoI	CTCGAG	1 cut(s)	171
XmaI	CCCGGG	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	3 cut(s)	408, 417, 951
Zsp2I	ATGCAT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.