Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009491

Physical Location & Seq

Genomic Coordinates Reverse (-)

626737 .. 628264

Gene Structure 1528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g00730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTCCAAAAGGGTTCTCTGCAAGTTTTTTGCACATGGCGCCTGTTTGAAGGGGGAGCATTGTGAGTTTTCACATGATTGGAAGGCTTCACCAAATAATATATGTACCTTTTATCTGAAAGGAGCTTGTGCATTTGGTAGTAGATGCAGATATGAACATGTCAAAGCTTCTCGGGCTCAGTCTTTCGGTTCGTCTTCATCAACAAATTCTCAGCCATCCCTGGTTATTGATTCTGCATCTTTGGTTCTTCCTGCAAGAACCTTAGCAAGTGGAGTTTCTCTTGCGCCACTCTCTCTTTCAGAACTCTCTGCTTCAAGTAGTCCTTTCTTACCTCCCTCAAAACCTGCCTGGAATGGTTCTCTGGATGGTGATTATGATGATGATGAAGGTAGTGTTGGGGAGACTAGGAATACTAGACCAGAAGATCGTGCTATTTGTTCATTTGCTGCAGCTGGTAATTGTCCTCGTGGAGAAAAATGTCCTCATATTCATGGAGATATATGCCCCAGCTGTGGAAAACATTGCTTGCATCCTTACAGACATTTGGAAAGGGAGGAGCATATGAAGATATGTGAGGAAAAGCGGAAGCAACTTGAGGCTTTGAAATGCAGTCAAGAAATAGAATGCAGTGTTTGCCTAGAACGTGTTTTGTCAAAGCCCACAGTTGCTGAGCGGAAGTTTGGGATACTCTCAGAATGTTCGATCATCCTTTTTGCATATCTTGTATTAGAAATTGGCGCAGTAGTTCCCCAACATCTGGTATGGATGTCAATAGCGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-CCCH zf-RING_2

Protein Analysis

261

Amino Acids

28.49

Weight (kDa)

7.14

Isoelectric Point (pI)

61.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_3	PF15663	6 - 60	8.2e-06	Zinc-finger containing family
zf-CCCH_4	PF18044	34 - 53	1e-06	CCCH-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08505 AT3G08505 AT3G08505
fragaria_vesca	FvH4_7g00890 FvH4_7g00890 FvH4_7g00890
malus_domestica	MD02G1313900.v1.1 MD07G1008500.v1.1
prunus_persica	Prupe.2G011700_v2.0.a1 Prupe.2G011700_v2.0.a1
pyrus_communis	pycom02g26320 pycom07g00730
rosa_chinensis	RchiOBHm_Chr1g0315781
rosa_laevigata	RLG00000030733
rosa_multiflora	Rmu_sc0009816.1_g000006
rosa_roxburghii	Rroxscaffold_4G00331440
rosa_rugosa	Rorug01G0005500
rosa_samantha	Rh1AG016400 Rh1BG008800 Rh1CG013700 Rh1DG009500
rosa_wichuraiana	Rw1G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	757
AccBSI	CCGCTC	1 cut(s)	673
AciI	CCGC	2 cut(s)	583, 673
AcsI	RAATTY	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	512, 757
AflIII	ACRYGT	2 cut(s)	157, 643
AgsI	TTSAA	3 cut(s)	49, 315, 604
AjnI	CCWGG	2 cut(s)	219, 347
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	4 cut(s)	125, 167, 452, 510
AluI	AGCT	4 cut(s)	125, 167, 452, 510
Alw26I	GTCTC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	668
Ama87I	CYCGRG	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	446, 449
ApoI	RAATTY	1 cut(s)	205
AspLEI	GCGC	4 cut(s)	41, 286, 740, 778
AsuHPI	GGTGA	2 cut(s)	81, 380
AvaI	CYCGRG	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	433, 461
BccI	CCATC	2 cut(s)	223, 359
BciT130I	CCWGG	2 cut(s)	221, 349
BciVI	GTATCC	1 cut(s)	678
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	3 cut(s)	405, 414, 638
BfmI	CTRYAG	1 cut(s)	447
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	678
BisI	GCNGC	2 cut(s)	447, 450
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	2 cut(s)	448, 451
Bme1390I	CCNGG	2 cut(s)	221, 349
BmeT110I	CYCGRG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	221, 349
BmsI	GCATC	3 cut(s)	134, 245, 538
BpiI	GAAGAC	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	262
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	614
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 757
Bse3DI	GCAATG	1 cut(s)	520
BseBI	CCWGG	2 cut(s)	221, 349
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	5 cut(s)	215, 370, 529, 705, 771
BseLI	CCNNNNNNNGG	2 cut(s)	512, 757
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	4 cut(s)	191, 224, 660, 705
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	2 cut(s)	433, 461
BseYI	CCCAGC	1 cut(s)	506
BshNI	GGYRCC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	171
BslI	CCNNNNNNNGG	2 cut(s)	512, 757
BsmAI	GTCTC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	629
BsoBI	CYCGRG	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	424, 702
Bsp1720I	GCTNAGC	1 cut(s)	669
BspACI	CCGC	2 cut(s)	583, 673
BspCNI	CTCAG	4 cut(s)	190, 223, 661, 704
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	352
BspT107I	GGYRCC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	424, 702
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	465
Bst2BI	CACGAG	1 cut(s)	465
Bst2UI	CCWGG	2 cut(s)	221, 349
Bst4CI	ACNGT	1 cut(s)	664
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	5 cut(s)	177, 210, 262, 669, 691
BstF5I	GGATG	5 cut(s)	215, 370, 529, 705, 771
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	4 cut(s)	41, 286, 740, 778
BstKTI	GATC	2 cut(s)	427, 705
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	2 cut(s)	424, 702
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 173, 633
BstNI	CCWGG	2 cut(s)	221, 349
BstNSI	RCATGY	1 cut(s)	161
BstSCI	CCNGG	2 cut(s)	219, 347
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	433, 461
BstV2I	GAAGAC	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	678
BtsCI	GGATG	5 cut(s)	215, 370, 529, 705, 771
BtsI	GCAGTG	1 cut(s)	634
BtsIMutI	CAGTG	1 cut(s)	634
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	527
CaiI	CAGNNNCTG	1 cut(s)	668
CfoI	GCGC	4 cut(s)	41, 286, 740, 778
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	4 cut(s)	35, 74, 158, 491
CviJI	RGCY	9 cut(s)	86, 125, 167, 176, 214, 452, 510, 599, 658
CviKI_1	RGCY	9 cut(s)	86, 125, 167, 176, 214, 452, 510, 599, 658
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	5 cut(s)	177, 210, 262, 669, 691
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	2 cut(s)	426, 704
DpnII	GATC	2 cut(s)	424, 702
Eco24I	GRGCYC	1 cut(s)	178
Eco88I	CYCGRG	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	219, 347
EcoT38I	GRGCYC	1 cut(s)	178
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	4 cut(s)	38, 77, 161, 494
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FatI	CATG	4 cut(s)	34, 73, 157, 490
FauNDI	CATATG	1 cut(s)	561
Fnu4HI	GCNGC	2 cut(s)	447, 450
FokI	GGATG	5 cut(s)	202, 377, 516, 692, 778
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	447, 450
FspBI	CTAG	3 cut(s)	405, 414, 638
GlaI	GCGC	4 cut(s)	40, 285, 739, 777
GluI	GCNGC	2 cut(s)	447, 450
GsaI	CCCAGC	1 cut(s)	510
HaeII	RGCGCY	1 cut(s)	42
HhaI	GCGC	4 cut(s)	41, 286, 740, 778
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	38, 77, 161, 494
Hin6I	GCGC	4 cut(s)	39, 284, 738, 776
HinP1I	GCGC	4 cut(s)	39, 284, 738, 776
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	2 cut(s)	81, 380
Hpy188I	TCNGA	3 cut(s)	117, 301, 694
Hpy188III	TCNNGA	2 cut(s)	362, 614
HpyAV	CCTTC	3 cut(s)	43, 76, 380
HpyCH4III	ACNGT	1 cut(s)	664
HpyCH4IV	ACGT	1 cut(s)	643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 173, 633
HpyF3I	CTNAG	5 cut(s)	177, 210, 262, 669, 691
HpySE526I	ACGT	1 cut(s)	643
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	4 cut(s)	38, 77, 161, 494
HspAI	GCGC	4 cut(s)	39, 284, 738, 776
KasI	GGCGCC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	424, 702
LmnI	GCTCC	3 cut(s)	55, 122, 556
Lsp1109I	GCAGC	2 cut(s)	433, 461
LweI	GCATC	3 cut(s)	134, 245, 538
MaeI	CTAG	3 cut(s)	405, 414, 638
MaeII	ACGT	1 cut(s)	643
MalI	GATC	2 cut(s)	426, 704
MbiI	CCGCTC	1 cut(s)	673
MboI	GATC	2 cut(s)	424, 702
MboII	GAAGA	4 cut(s)	186, 239, 434, 577
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	3 cut(s)	205, 457, 732
Mly113I	GGCGCC	1 cut(s)	39
MnlI	CCTC	7 cut(s)	342, 346, 474, 492, 547, 568, 589
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	2 cut(s)	452, 510
MspR9I	CCNGG	2 cut(s)	221, 349
Mva1269I	GAATGC	1 cut(s)	629
MvaI	CCWGG	2 cut(s)	221, 349
MwoI	GCNNNNNNNGC	3 cut(s)	38, 173, 633
NarI	GGCGCC	1 cut(s)	39
NdeI	CATATG	1 cut(s)	561
NdeII	GATC	2 cut(s)	424, 702
NlaIII	CATG	4 cut(s)	38, 77, 161, 494
NlaIV	GGNNCC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	161
PciI	ACATGT	1 cut(s)	157
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	757
PkrI	GCNGC	2 cut(s)	448, 451
PluTI	GGCGCC	1 cut(s)	42
PscI	ACATGT	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	219, 347
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	2 cut(s)	219, 347
PspN4I	GGNNCC	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	668
PvuII	CAGCTG	2 cut(s)	452, 510
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	489
SatI	GCNGC	2 cut(s)	447, 450
Sau3AI	GATC	2 cut(s)	424, 702
ScrFI	CCNGG	2 cut(s)	221, 349
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	3 cut(s)	134, 245, 538
SfcI	CTRYAG	1 cut(s)	447
SfoI	GGCGCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	3 cut(s)	205, 457, 732
SsiI	CCGC	2 cut(s)	583, 673
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	3 cut(s)	405, 414, 638
StyD4I	CCNGG	2 cut(s)	219, 347
TaaI	ACNGT	1 cut(s)	664
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	1 cut(s)	701
TasI	AATT	3 cut(s)	205, 457, 732
TfiI	GAWTC	1 cut(s)	230
TscAI	CASTG	1 cut(s)	634
TseI	GCWGC	2 cut(s)	446, 449
TspDTI	ATGAA	6 cut(s)	168, 186, 399, 429, 479, 578
TspRI	CASTG	1 cut(s)	634
Van91I	CCANNNNNTGG	1 cut(s)	757
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	1 cut(s)	161
XspI	CTAG	3 cut(s)	405, 414, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.