Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009491

Physical Location & Seq

Genomic Coordinates Reverse (-)

1444155 .. 1448987

Gene Structure 4833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G000960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCCAAAAGGGTTCTCTGCAAGTTCTTTGCCCATGGAGCCTGTTTAAAAGGGGAGCACTGCGAGTTTTCACATGATTGGAAGGATCCATCAAATAATATATGTACCTTTTATCAGAAAGGAGCTTGTGCCTTTGGTAGTCGATGCAGATATGAACATGTTAAAGCTTCTCGGGCTCAGTCATCTGGTTCGTCTTCATCAGCAAATTCTCATCAATCTCTGGCTTTTGATTCTGCTCTTGCTCATCCCTCAAGAACTGCATCAAGTGGAGTTGCTTTAGTCCCGGGCACTCTTTCTGAGCTCTCTGCATTTAGTAGTCCTTTCTTACCTCCCCCTAAACCTGCATGGAGTGATTCTCTGGATGATGGTGATTTTGATCACAATGAGGATGATATTGTGGGGGAGACTAGAAGTGCTAGACCAGCCGATCGTGCTATCTGTTCGTTTGCTGCAGCTGGAAATTGTCCTCGTGGAGAAAATTGTCCTCATATTCATGGAGATATTTGCCCCAGCTGTGGAAAACATTGTTTGCATCCTTACAGACCTGTGGAAAGAGAGGAGCATATGAGGACGTGCGAGGAAAAGCACAAGCAACTTGAGGCATTAAAGCGTAGTCAAGAAATAGAATGCAGTGTTTGCCTGGAACGTGTTCTTTCAAAGCCTACAGTTGCTGAACGAAAGTTTGGGATACTCTCAGAATGTGATCACCCTTTTTGCATATCTTGTATTCGAAACTGGCGCAGTAGCTCCCCAACTTCTGGTATGGATGTGAATAGTGCGTTGAGAGCTTGCCCAATATGTCGGAAGCTGTCATACTTTGTGATTCCAAGTGTCATATGGTATAACACAAAAGAAGAGAAAGAGGAAATTGTTGACAGCTACAAGGCTCGCCTTAGGTCGATTGATTGCAAGCACTTTGATTTTGGAAATGGGAACTGCCCATTTGGGACAAGCTGTTTTTATAAGCATGCATACCGGGATGGCCGTCTAGAGGAAGTTGTGCTGCGTCACCTGGGAAATGAAGATGGTCAGACGGTGATAGCTGCAAATATTAGGCTGTCAGACTTTCTTAGTGATTTGCGCATAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-CCCH zf-RING_2

Protein Analysis

363

Amino Acids

40.46

Weight (kDa)

7.2

Isoelectric Point (pI)

62.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_3	PF15663	6 - 61	1.7e-06	Zinc-finger containing family
zf-CCCH_4	PF18044	34 - 53	9.6e-07	CCCH-type zinc finger
zf-RING_2	PF13639	209 - 268	1.5e-06	Ring finger domain
zf-C3HC4	PF00097	210 - 267	2.2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08505 AT3G08505 AT3G08505
fragaria_vesca	FvH4_7g00890 FvH4_7g00890 FvH4_7g00890
malus_domestica	MD02G1313900.v1.1 MD07G1008500.v1.1
prunus_persica	Prupe.2G011700_v2.0.a1 Prupe.2G011700_v2.0.a1
pyrus_communis	pycom02g26320 pycom07g00730
rosa_chinensis	RchiOBHm_Chr1g0315781
rosa_laevigata	RLG00000030733
rosa_multiflora	Rmu_sc0009816.1_g000006
rosa_roxburghii	Rroxscaffold_4G00331440
rosa_rugosa	Rorug01G0005500
rosa_samantha	Rh1AG016400 Rh1BG008800 Rh1CG013700 Rh1DG009500
rosa_wichuraiana	Rw1G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	963
Acc16I	TGCGCA	1 cut(s)	1082
Acc36I	ACCTGC	1 cut(s)	349
AccB7I	CCANNNNNTGG	1 cut(s)	758
AclWI	GGATC	2 cut(s)	80, 93
AcoI	YGGCCR	2 cut(s)	3, 982
AcsI	RAATTY	1 cut(s)	205
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	3 cut(s)	515, 758, 991
AflIII	ACRYGT	2 cut(s)	157, 646
AgsI	TTSAA	1 cut(s)	657
AjiI	CACGTC	1 cut(s)	573
AjnI	CCWGG	2 cut(s)	639, 1011
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
Alw21I	GWGCWC	2 cut(s)	60, 303
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	80, 93
AlwNI	CAGNNNCTG	1 cut(s)	671
Ama87I	CYCGRG	2 cut(s)	171, 283
AoxI	GGCC	2 cut(s)	3, 982
ApeKI	GCWGC	4 cut(s)	449, 452, 1003, 1043
ApoI	RAATTY	1 cut(s)	205
Asp700I	GAANNNNTTC	1 cut(s)	648
AspLEI	GCGC	2 cut(s)	741, 1083
AsuC2I	CCSGG	3 cut(s)	284, 285, 977
AsuHPI	GGTGA	4 cut(s)	380, 698, 1001, 1048
AsuII	TTCGAA	1 cut(s)	730
AvaI	CYCGRG	2 cut(s)	171, 283
AxyI	CCTNAGG	1 cut(s)	893
BaeGI	GKGCMC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	85
BanII	GRGCYC	2 cut(s)	178, 303
BarI	GAAGNNNNNNTAC	2 cut(s)	797, 829
BauI	CACGAG	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	2 cut(s)	60, 303
BbvI	GCAGC	4 cut(s)	436, 464, 990, 1030
BccI	CCATC	4 cut(s)	97, 359, 974, 1019
BceAI	ACGGC	1 cut(s)	969
BciT130I	CCWGG	2 cut(s)	641, 1013
BciVI	GTATCC	1 cut(s)	681
BclI	TGATCA	2 cut(s)	376, 703
BcnI	CCSGG	3 cut(s)	284, 285, 977
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	3 cut(s)	408, 417, 989
BfmI	CTRYAG	2 cut(s)	450, 663
BfuAI	ACCTGC	1 cut(s)	349
BfuI	GTATCC	1 cut(s)	681
BisI	GCNGC	4 cut(s)	450, 453, 1004, 1044
BlsI	GCNGC	4 cut(s)	451, 454, 1005, 1045
Bme1390I	CCNGG	5 cut(s)	284, 285, 641, 977, 1013
BmeT110I	CYCGRG	2 cut(s)	171, 283
BmgBI	CACGTC	1 cut(s)	573
BmiI	GGNNCC	2 cut(s)	40, 87
BmrFI	CCNGG	5 cut(s)	284, 285, 641, 977, 1013
BmsI	GCATC	3 cut(s)	134, 269, 541
BpiI	GAAGAC	1 cut(s)	186
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
Bpu14I	TTCGAA	1 cut(s)	730
BpuEI	CTTGAG	2 cut(s)	235, 617
BpuMI	CCSGG	3 cut(s)	284, 285, 977
BsaBI	GATNNNNATC	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	34, 283, 1012
Bsc4I	CCNNNNNNNGG	3 cut(s)	515, 758, 991
Bse1I	ACTGG	1 cut(s)	740
Bse21I	CCTNAGG	1 cut(s)	893
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	641, 1013
BseDI	CCNNGG	3 cut(s)	34, 283, 1012
BseGI	GGATG	6 cut(s)	244, 367, 394, 532, 772, 985
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	3 cut(s)	515, 758, 991
BseMII	CTCAG	3 cut(s)	191, 288, 708
BseNI	ACTGG	1 cut(s)	740
BseRI	GAGGAG	1 cut(s)	572
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	4 cut(s)	436, 464, 990, 1030
BseYI	CCCAGC	1 cut(s)	509
Bsh1285I	CGRYCG	1 cut(s)	430
BshFI	GGCC	2 cut(s)	5, 984
BsiEI	CGRYCG	1 cut(s)	430
BsiHKAI	GWGCWC	2 cut(s)	60, 303
BsiHKCI	CYCGRG	2 cut(s)	171, 283
BsiSI	CCGG	2 cut(s)	284, 976
BslFI	GGGAC	2 cut(s)	266, 961
BslI	CCNNNNNNNGG	3 cut(s)	515, 758, 991
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	2 cut(s)	266, 961
BsmI	GAATGC	1 cut(s)	632
BsnI	GGCC	2 cut(s)	5, 984
BsoBI	CYCGRG	2 cut(s)	171, 283
Bsp119I	TTCGAA	1 cut(s)	730
Bsp1286I	GDGCHC	4 cut(s)	60, 178, 290, 303
Bsp143I	GATC	4 cut(s)	85, 376, 427, 703
Bsp19I	CCATGG	1 cut(s)	34
BspANI	GGCC	2 cut(s)	5, 984
BspCNI	CTCAG	3 cut(s)	190, 289, 707
BspLI	GGNNCC	2 cut(s)	40, 87
BspMAI	CTGCAG	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	80, 93
BspT104I	TTCGAA	1 cut(s)	730
BsrI	ACTGG	1 cut(s)	740
BssECI	CCNNGG	3 cut(s)	34, 283, 1012
BssMI	GATC	4 cut(s)	85, 376, 427, 703
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	641, 1013
Bst4CI	ACNGT	2 cut(s)	667, 1036
Bst6I	CTCTTC	1 cut(s)	849
BstAPI	GCANNNNNTGC	1 cut(s)	636
BstBI	TTCGAA	1 cut(s)	730
BstC8I	GCNNGC	4 cut(s)	790, 889, 911, 969
BstDEI	CTNAG	5 cut(s)	177, 297, 694, 893, 1070
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	6 cut(s)	244, 367, 394, 532, 772, 985
BstHHI	GCGC	2 cut(s)	741, 1083
BstKTI	GATC	4 cut(s)	88, 379, 430, 706
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	4 cut(s)	85, 376, 427, 703
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 173, 422, 431, 636, 785
BstNI	CCWGG	2 cut(s)	641, 1013
BstNSI	RCATGY	2 cut(s)	161, 971
BstSCI	CCNGG	5 cut(s)	282, 283, 639, 975, 1011
BstSFI	CTRYAG	2 cut(s)	450, 663
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	4 cut(s)	436, 464, 990, 1030
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
Bsu36I	CCTNAGG	1 cut(s)	893
BsuI	GTATCC	1 cut(s)	681
BsuRI	GGCC	2 cut(s)	5, 984
BtgI	CCRYGG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	573
BtsCI	GGATG	6 cut(s)	244, 367, 394, 532, 772, 985
BtsI	GCAGTG	2 cut(s)	58, 637
BtsIMutI	CAGTG	2 cut(s)	58, 637
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	4 cut(s)	790, 889, 911, 969
CaiI	CAGNNNCTG	1 cut(s)	671
CfoI	GCGC	2 cut(s)	741, 1083
Cfr9I	CCCGGG	1 cut(s)	283
CseI	GACGC	1 cut(s)	995
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	6 cut(s)	35, 74, 158, 345, 494, 968
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	5 cut(s)	177, 297, 694, 893, 1070
DpnI	GATC	4 cut(s)	87, 378, 429, 705
DpnII	GATC	4 cut(s)	85, 376, 427, 703
DraI	TTTAAA	1 cut(s)	48
EaeI	YGGCCR	2 cut(s)	3, 982
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	34
Eco24I	GRGCYC	2 cut(s)	178, 303
Eco53kI	GAGCTC	1 cut(s)	301
Eco81I	CCTNAGG	1 cut(s)	893
Eco88I	CYCGRG	2 cut(s)	171, 283
EcoICRI	GAGCTC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	639, 1011
EcoT14I	CCWWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	973
EcoT38I	GRGCYC	2 cut(s)	178, 303
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	6 cut(s)	38, 77, 161, 348, 497, 971
FaqI	GGGAC	2 cut(s)	266, 961
FatI	CATG	6 cut(s)	34, 73, 157, 344, 493, 967
FauNDI	CATATG	2 cut(s)	564, 836
FbaI	TGATCA	2 cut(s)	376, 703
Fnu4HI	GCNGC	4 cut(s)	450, 453, 1004, 1044
FokI	GGATG	6 cut(s)	231, 374, 401, 519, 779, 992
FriOI	GRGCYC	2 cut(s)	178, 303
Fsp4HI	GCNGC	4 cut(s)	450, 453, 1004, 1044
FspBI	CTAG	3 cut(s)	408, 417, 989
FspI	TGCGCA	1 cut(s)	1082
GlaI	GCGC	2 cut(s)	740, 1082
GluI	GCNGC	4 cut(s)	450, 453, 1004, 1044
GsaI	CCCAGC	1 cut(s)	513
HaeIII	GGCC	2 cut(s)	5, 984
HapII	CCGG	2 cut(s)	284, 976
HgaI	GACGC	1 cut(s)	995
HhaI	GCGC	2 cut(s)	741, 1083
Hin1II	CATG	6 cut(s)	38, 77, 161, 348, 497, 971
Hin6I	GCGC	2 cut(s)	739, 1081
HinP1I	GCGC	2 cut(s)	739, 1081
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	3 cut(s)	230, 353, 823
HpaII	CCGG	2 cut(s)	284, 976
HphI	GGTGA	4 cut(s)	380, 698, 1001, 1048
Hpy166II	GTNNAC	1 cut(s)	874
Hpy188I	TCNGA	6 cut(s)	117, 298, 697, 804, 1032, 1063
Hpy188III	TCNNGA	4 cut(s)	252, 359, 617, 989
Hpy8I	GTNNAC	1 cut(s)	874
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	667, 1036
HpyCH4IV	ACGT	2 cut(s)	572, 646
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 173, 422, 431, 636, 785
HpyF3I	CTNAG	5 cut(s)	177, 297, 694, 893, 1070
HpySE526I	ACGT	2 cut(s)	572, 646
Hsp92II	CATG	6 cut(s)	38, 77, 161, 348, 497, 971
HspAI	GCGC	2 cut(s)	739, 1081
Ksp22I	TGATCA	2 cut(s)	376, 703
Kzo9I	GATC	4 cut(s)	85, 376, 427, 703
LmnI	GCTCC	5 cut(s)	38, 55, 122, 559, 752
Lsp1109I	GCAGC	4 cut(s)	436, 464, 990, 1030
LweI	GCATC	3 cut(s)	134, 269, 541
MaeI	CTAG	3 cut(s)	408, 417, 989
MaeII	ACGT	2 cut(s)	572, 646
MaeIII	GTNAC	1 cut(s)	1007
MalI	GATC	4 cut(s)	87, 378, 429, 705
MboI	GATC	4 cut(s)	85, 376, 427, 703
MboII	GAAGA	3 cut(s)	186, 866, 1034
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	4 cut(s)	60, 178, 290, 303
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	205, 460, 478, 867
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	782
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	973
MroXI	GAANNNNTTC	1 cut(s)	648
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	47, 162, 605
MslI	CAYNNNNRTG	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	455, 513
MspI	CCGG	2 cut(s)	284, 976
MspR9I	CCNGG	5 cut(s)	284, 285, 641, 977, 1013
Mva1269I	GAATGC	1 cut(s)	632
MvaI	CCWGG	2 cut(s)	641, 1013
MwoI	GCNNNNNNNGC	6 cut(s)	38, 173, 422, 431, 636, 785
NciI	CCSGG	3 cut(s)	284, 285, 977
NcoI	CCATGG	1 cut(s)	34
NdeI	CATATG	2 cut(s)	564, 836
NdeII	GATC	4 cut(s)	85, 376, 427, 703
NlaIII	CATG	6 cut(s)	38, 77, 161, 348, 497, 971
NlaIV	GGNNCC	2 cut(s)	40, 87
NmuCI	GTSAC	1 cut(s)	1007
NsbI	TGCGCA	1 cut(s)	1082
NsiI	ATGCAT	1 cut(s)	973
NspI	RCATGY	2 cut(s)	161, 971
NspV	TTCGAA	1 cut(s)	730
PaeI	GCATGC	1 cut(s)	971
PciI	ACATGT	1 cut(s)	157
PctI	GAATGC	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	3 cut(s)	230, 353, 823
PflMI	CCANNNNNTGG	1 cut(s)	758
PkrI	GCNGC	4 cut(s)	451, 454, 1005, 1045
Ple19I	CGATCG	1 cut(s)	430
PscI	ACATGT	1 cut(s)	157
PsiI	TTATAA	1 cut(s)	963
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	639, 1011
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	2 cut(s)	639, 1011
PspN4I	GGNNCC	2 cut(s)	40, 87
PstI	CTGCAG	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	85
PvuI	CGATCG	1 cut(s)	430
PvuII	CAGCTG	2 cut(s)	455, 513
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	492
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	47, 162, 605
SatI	GCNGC	4 cut(s)	450, 453, 1004, 1044
Sau3AI	GATC	4 cut(s)	85, 376, 427, 703
ScrFI	CCNGG	5 cut(s)	284, 285, 641, 977, 1013
SduI	GDGCHC	4 cut(s)	60, 178, 290, 303
SfaNI	GCATC	3 cut(s)	134, 269, 541
SfcI	CTRYAG	2 cut(s)	450, 663
SfuI	TTCGAA	1 cut(s)	730
SmaI	CCCGGG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	2 cut(s)	250, 596
SmoI	CTYRAG	2 cut(s)	250, 596
SphI	GCATGC	1 cut(s)	971
Sse9I	AATT	4 cut(s)	205, 460, 478, 867
SspI	AATATT	1 cut(s)	1051
SspMI	CTAG	3 cut(s)	408, 417, 989
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	5 cut(s)	282, 283, 639, 975, 1011
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	2 cut(s)	667, 1036
TaiI	ACGT	2 cut(s)	575, 649
TaqI	TCGA	3 cut(s)	142, 730, 899
TasI	AATT	4 cut(s)	205, 460, 478, 867
TfiI	GAWTC	3 cut(s)	230, 353, 823
Tru1I	TTAA	3 cut(s)	47, 162, 605
Tru9I	TTAA	3 cut(s)	47, 162, 605
TscAI	CASTG	2 cut(s)	65, 637
TseFI	GTSAC	1 cut(s)	1007
TseI	GCWGC	4 cut(s)	449, 452, 1003, 1043
Tsp45I	GTSAC	1 cut(s)	1007
TspDTI	ATGAA	4 cut(s)	168, 186, 482, 1035
TspMI	CCCGGG	1 cut(s)	283
TspRI	CASTG	2 cut(s)	65, 637
Van91I	CCANNNNNTGG	1 cut(s)	758
XapI	RAATTY	1 cut(s)	205
XbaI	TCTAGA	1 cut(s)	988
XceI	RCATGY	2 cut(s)	161, 971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	834
XmaI	CCCGGG	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	3 cut(s)	408, 417, 989
Zsp2I	ATGCAT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.