Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009491

Physical Location & Seq

Genomic Coordinates Reverse (-)

1031390 .. 1039094

Gene Structure 7705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G011700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTCCAAAAGGGTTCTCTGCAAATTTTTTGCCCATGGAGCCTGTTTGAAAGGGGAGCATTGTGAGTTTTCACATGATTGGAAGGCAACACCAAATAATATATGTACCTTTTATCAGAAAGGCGCTTGTGCATTTGGTAGTCGATGCAGATATGAACATGTTAAAGCTTCTCGGGCTCAGTCTTCTGGTTCGTCTTCATCACCAAATTCTCGGCAATCTCTGGCTGTTGATTCTTTATCTCTGTCTCATCCTTCAAGAACCTCATCAAGTGGAGTTGCTCTTTCCCCGGGAATTCTTTCAGAACTCTCTGCTTCAAGTAGTCCTTTCTTACCTCCCTCTAAGCCTGCCTGGAATGGTTCCTTGGATGATGATGATTATTCTGATAATGGTGACAATGATGATGATGGTGCTGGGGTGACTAGGAGTACTAGGCCAGAAGATCATGCTATTTGTTCATTTGCTGCAGCTGGTAATTGTCCTCGTGGAGAAAAATGTCCTCATATTCATGGAGATATATGCCCCAGCTGTGGAAAACATTGCTTGCATCCTTACAGACCTATGGAAAGGGAGGAGCATATGAAGACATGTGAGGAAAAGCAGAAGCAACTTGAGGCTTTGAAACGCAGTCAAGAAATAGAATGCAGTGTTTGCCTGGAACGTGTTTTGTCAAAGCCCACAGTTGCTGAGCGGAAGTTTGGGATACTCTCAGAATGTGATCATCCTTTTTGCGTATCTTGTATTCGAAATTGGCGTAGTAGTTCACCAACTTCTGGTATGGATGTCAATAGTGCATTGAGAGCGTGCCCAATATGTCGGAAGCTGTCATACTTTGTCATTCCAAGTGTCATTTGGTATAACACAAAAGAAGAGAAACAGGAAATTATTGACAGCTACAAGTCAAGGCTCAGGTCAATTGATTGCAAGCACTTCGATTTTGGAAATGGGAACTGCCCATTTGGAACTAGTTGCTTTTATAAGCATACGGTCAAGCCAGGCTCATATGTATGGAAATTTCACAGGCCACCTCCAAGAAGGCCTCCTCCACGTCGATATGATATTGTGCCTATGGATGTCATATTTCATATGTTCGAGCACTTAGAAGAATGGGATGATTATATACTTGAAGATTTAGAAAATGAAGATTTAAACCCATTGGAGAGGGAGTTGTTAATGCAGATGGGTTTTGATACAAGTGACTCGAGTGAAGATGAGATAGATTTATGGCCCGTGAGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-CCCH zf-RING_2

Protein Analysis

413

Amino Acids

46.52

Weight (kDa)

6.03

Isoelectric Point (pI)

66.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08505 AT3G08505 AT3G08505
fragaria_vesca	FvH4_7g00890 FvH4_7g00890 FvH4_7g00890
malus_domestica	MD02G1313900.v1.1 MD07G1008500.v1.1
prunus_persica	Prupe.2G011700_v2.0.a1 Prupe.2G011700_v2.0.a1
pyrus_communis	pycom02g26320 pycom07g00730
rosa_chinensis	RchiOBHm_Chr1g0315781
rosa_laevigata	RLG00000030733
rosa_multiflora	Rmu_sc0009816.1_g000006
rosa_roxburghii	Rroxscaffold_4G00331440
rosa_rugosa	Rorug01G0005500
rosa_samantha	Rh1AG016400 Rh1BG008800 Rh1CG013700 Rh1DG009500
rosa_wichuraiana	Rw1G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	975
AccB7I	CCANNNNNTGG	1 cut(s)	770
AccBSI	CCGCTC	1 cut(s)	688
AciI	CCGC	1 cut(s)	688
AcsI	RAATTY	4 cut(s)	23, 205, 291, 1010
AfaI	GTAC	2 cut(s)	106, 427
AfiI	CCNNNNNNNGG	2 cut(s)	527, 770
AflIII	ACRYGT	3 cut(s)	157, 584, 658
AgsI	TTSAA	5 cut(s)	49, 255, 315, 619, 1124
AhlI	ACTAGT	1 cut(s)	962
AjiI	CACGTC	1 cut(s)	1046
AjnI	CCWGG	3 cut(s)	347, 651, 991
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	6 cut(s)	167, 467, 525, 820, 891, 1233
AluI	AGCT	6 cut(s)	167, 467, 525, 820, 891, 1233
Alw21I	GWGCWC	1 cut(s)	1095
Alw26I	GTCTC	1 cut(s)	249
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	3 cut(s)	171, 286, 1198
AoxI	GGCC	4 cut(s)	431, 1019, 1034, 1223
ApeKI	GCWGC	2 cut(s)	461, 464
ApoI	RAATTY	4 cut(s)	23, 205, 291, 1010
Asp700I	GAANNNNTTC	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	1224
AsuC2I	CCSGG	2 cut(s)	287, 288
AsuHPI	GGTGA	4 cut(s)	192, 401, 427, 753
AsuII	TTCGAA	1 cut(s)	742
AvaI	CYCGRG	3 cut(s)	171, 286, 1198
BaeGI	GKGCMC	1 cut(s)	806
BanII	GRGCYC	1 cut(s)	178
BarI	GAAGNNNNNNTAC	2 cut(s)	809, 841
BauI	CACGAG	1 cut(s)	480
BbsI	GAAGAC	3 cut(s)	174, 186, 587
Bbv12I	GWGCWC	1 cut(s)	1095
BbvI	GCAGC	2 cut(s)	448, 476
BccI	CCATC	2 cut(s)	398, 1171
BcgI	CGANNNNNNTGC	2 cut(s)	910, 944
BciT130I	CCWGG	3 cut(s)	349, 653, 993
BciVI	GTATCC	1 cut(s)	693
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	2 cut(s)	287, 288
BcoDI	GTCTC	1 cut(s)	249
BcuI	ACTAGT	1 cut(s)	962
BfaI	CTAG	4 cut(s)	420, 429, 963, 1237
BfmI	CTRYAG	1 cut(s)	462
BfoI	RGCGCY	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	693
BisI	GCNGC	2 cut(s)	462, 465
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	2 cut(s)	463, 466
BmcAI	AGTACT	1 cut(s)	427
Bme1390I	CCNGG	5 cut(s)	287, 288, 349, 653, 993
BmeT110I	CYCGRG	3 cut(s)	171, 286, 1198
BmgBI	CACGTC	1 cut(s)	1046
BmgT120I	GGNCC	1 cut(s)	1224
BmiI	GGNNCC	2 cut(s)	40, 358
BmrFI	CCNGG	5 cut(s)	287, 288, 349, 653, 993
BmsI	GCATC	2 cut(s)	134, 553
BpiI	GAAGAC	3 cut(s)	174, 186, 587
Bpu10I	CCTNAGC	1 cut(s)	905
Bpu1102I	GCTNAGC	1 cut(s)	684
Bpu14I	TTCGAA	1 cut(s)	742
BpuEI	CTTGAG	1 cut(s)	629
BpuMI	CCSGG	2 cut(s)	287, 288
BsaJI	CCNNGG	4 cut(s)	34, 285, 286, 360
BsaXI	ACNNNNNCTCC	2 cut(s)	1148, 1178
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 770
Bse3DI	GCAATG	1 cut(s)	535
BseBI	CCWGG	3 cut(s)	349, 653, 993
BseDI	CCNNGG	4 cut(s)	34, 285, 286, 360
BseGI	GGATG	7 cut(s)	247, 370, 544, 718, 784, 1075, 1114
BseLI	CCNNNNNNNGG	2 cut(s)	527, 770
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	4 cut(s)	191, 675, 720, 919
BseRI	GAGGAG	2 cut(s)	584, 1029
BseSI	GKGCMC	1 cut(s)	806
BseXI	GCAGC	2 cut(s)	448, 476
BseYI	CCCAGC	2 cut(s)	410, 521
BshFI	GGCC	4 cut(s)	433, 1021, 1036, 1225
BsiHKAI	GWGCWC	1 cut(s)	1095
BsiHKCI	CYCGRG	3 cut(s)	171, 286, 1198
BsiSI	CCGG	1 cut(s)	287
BslI	CCNNNNNNNGG	2 cut(s)	527, 770
BsmAI	GTCTC	1 cut(s)	249
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	4 cut(s)	433, 1021, 1036, 1225
BsoBI	CYCGRG	3 cut(s)	171, 286, 1198
Bsp119I	TTCGAA	1 cut(s)	742
Bsp1286I	GDGCHC	3 cut(s)	178, 806, 1095
Bsp143I	GATC	2 cut(s)	439, 715
Bsp1720I	GCTNAGC	1 cut(s)	684
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	1 cut(s)	688
BspANI	GGCC	4 cut(s)	433, 1021, 1036, 1225
BspCNI	CTCAG	4 cut(s)	190, 676, 719, 918
BspLI	GGNNCC	2 cut(s)	40, 358
BspMAI	CTGCAG	1 cut(s)	466
BspT104I	TTCGAA	1 cut(s)	742
BsrBI	CCGCTC	1 cut(s)	688
BsrDI	GCAATG	1 cut(s)	535
BssECI	CCNNGG	4 cut(s)	34, 285, 286, 360
BssMI	GATC	2 cut(s)	439, 715
BssSI	CACGAG	1 cut(s)	480
BssT1I	CCWWGG	2 cut(s)	34, 360
Bst2BI	CACGAG	1 cut(s)	480
Bst2UI	CCWGG	3 cut(s)	349, 653, 993
Bst4CI	ACNGT	2 cut(s)	679, 985
Bst6I	CTCTTC	1 cut(s)	861
BstAPI	GCANNNNNTGC	1 cut(s)	648
BstBI	TTCGAA	1 cut(s)	742
BstC8I	GCNNGC	4 cut(s)	345, 542, 802, 923
BstDEI	CTNAG	6 cut(s)	177, 339, 684, 706, 905, 1096
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	7 cut(s)	247, 370, 544, 718, 784, 1075, 1114
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	2 cut(s)	442, 718
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	2 cut(s)	439, 715
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 173, 648, 797
BstNI	CCWGG	3 cut(s)	349, 653, 993
BstNSI	RCATGY	2 cut(s)	161, 588
BstSCI	CCNGG	5 cut(s)	285, 286, 347, 651, 991
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	1 cut(s)	806
BstV1I	GCAGC	2 cut(s)	448, 476
BstV2I	GAAGAC	3 cut(s)	174, 186, 587
BsuI	GTATCC	1 cut(s)	693
BsuRI	GGCC	4 cut(s)	433, 1021, 1036, 1225
BtgI	CCRYGG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	1046
BtsCI	GGATG	7 cut(s)	247, 370, 544, 718, 784, 1075, 1114
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	649
Cac8I	GCNNGC	4 cut(s)	345, 542, 802, 923
CaiI	CAGNNNCTG	1 cut(s)	683
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	1224
Cfr9I	CCCGGG	1 cut(s)	286
Csp6I	GTAC	2 cut(s)	105, 426
CviAII	CATG	6 cut(s)	35, 74, 158, 443, 506, 585
CviQI	GTAC	2 cut(s)	105, 426
DdeI	CTNAG	6 cut(s)	177, 339, 684, 706, 905, 1096
DpnI	GATC	2 cut(s)	441, 717
DpnII	GATC	2 cut(s)	439, 715
DraI	TTTAAA	1 cut(s)	1146
Eam1104I	CTCTTC	1 cut(s)	861
EarI	CTCTTC	1 cut(s)	861
Eco130I	CCWWGG	2 cut(s)	34, 360
Eco147I	AGGCCT	1 cut(s)	1036
Eco24I	GRGCYC	1 cut(s)	178
Eco88I	CYCGRG	3 cut(s)	171, 286, 1198
EcoRI	GAATTC	1 cut(s)	291
EcoRII	CCWGG	3 cut(s)	347, 651, 991
EcoT14I	CCWWGG	2 cut(s)	34, 360
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	2 cut(s)	34, 360
FaeI	CATG	6 cut(s)	38, 77, 161, 446, 509, 588
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FatI	CATG	6 cut(s)	34, 73, 157, 442, 505, 584
FauNDI	CATATG	3 cut(s)	576, 1000, 1083
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	2 cut(s)	462, 465
FokI	GGATG	7 cut(s)	234, 377, 531, 705, 791, 1082, 1121
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	462, 465
FspBI	CTAG	4 cut(s)	420, 429, 963, 1237
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	2 cut(s)	462, 465
GsaI	CCCAGC	2 cut(s)	414, 525
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	4 cut(s)	433, 1021, 1036, 1225
HapII	CCGG	1 cut(s)	287
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	6 cut(s)	38, 77, 161, 446, 509, 588
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	2 cut(s)	230, 1196
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	4 cut(s)	192, 401, 427, 753
Hpy166II	GTNNAC	1 cut(s)	761
Hpy188I	TCNGA	5 cut(s)	117, 301, 382, 709, 816
Hpy188III	TCNNGA	2 cut(s)	255, 629
Hpy8I	GTNNAC	1 cut(s)	761
Hpy99I	CGWCG	1 cut(s)	1050
HpyAV	CCTTC	3 cut(s)	76, 261, 1026
HpyCH4III	ACNGT	2 cut(s)	679, 985
HpyCH4IV	ACGT	2 cut(s)	658, 1045
HpyCH4V	TGCA	9 cut(s)	21, 131, 147, 464, 544, 642, 791, 921, 1174
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 173, 648, 797
HpyF3I	CTNAG	6 cut(s)	177, 339, 684, 706, 905, 1096
HpySE526I	ACGT	2 cut(s)	658, 1045
Hsp92II	CATG	6 cut(s)	38, 77, 161, 446, 509, 588
HspAI	GCGC	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	2 cut(s)	439, 715
LmnI	GCTCC	3 cut(s)	38, 55, 571
Lsp1109I	GCAGC	2 cut(s)	448, 476
LweI	GCATC	2 cut(s)	134, 553
MaeI	CTAG	4 cut(s)	420, 429, 963, 1237
MaeII	ACGT	2 cut(s)	658, 1045
MaeIII	GTNAC	3 cut(s)	389, 415, 1193
MalI	GATC	2 cut(s)	441, 717
MbiI	CCGCTC	1 cut(s)	688
MboI	GATC	2 cut(s)	439, 715
MboII	GAAGA	9 cut(s)	174, 186, 449, 592, 878, 1112, 1136, 1151, 1217
MfeI	CAATTG	1 cut(s)	912
MhlI	GDGCHC	3 cut(s)	178, 806, 1095
MluCI	AATT	8 cut(s)	23, 205, 291, 472, 745, 879, 912, 1010
MlyI	GAGTC	1 cut(s)	1190
MmeI	TCCRAC	1 cut(s)	794
MroXI	GAANNNNTTC	1 cut(s)	295
MseI	TTAA	3 cut(s)	162, 1145, 1169
MslI	CAYNNNNRTG	2 cut(s)	504, 1003
MspA1I	CMGCKG	2 cut(s)	467, 525
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	5 cut(s)	287, 288, 349, 653, 993
MunI	CAATTG	1 cut(s)	912
Mva1269I	GAATGC	1 cut(s)	644
MvaI	CCWGG	3 cut(s)	349, 653, 993
MwoI	GCNNNNNNNGC	4 cut(s)	38, 173, 648, 797
NciI	CCSGG	2 cut(s)	287, 288
NcoI	CCATGG	1 cut(s)	34
NdeI	CATATG	3 cut(s)	576, 1000, 1083
NdeII	GATC	2 cut(s)	439, 715
NlaIII	CATG	6 cut(s)	38, 77, 161, 446, 509, 588
NlaIV	GGNNCC	2 cut(s)	40, 358
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	3 cut(s)	389, 415, 1193
NspI	RCATGY	2 cut(s)	161, 588
NspV	TTCGAA	1 cut(s)	742
PaeR7I	CTCGAG	1 cut(s)	1198
PceI	AGGCCT	1 cut(s)	1036
PciI	ACATGT	2 cut(s)	157, 584
PcsI	WCGNNNNNNNCGW	1 cut(s)	748
PctI	GAATGC	1 cut(s)	644
PdmI	GAANNNNTTC	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	770
PkrI	GCNGC	2 cut(s)	463, 466
PleI	GAGTC	1 cut(s)	1190
PpsI	GAGTC	1 cut(s)	1190
PscI	ACATGT	2 cut(s)	157, 584
PsiI	TTATAA	1 cut(s)	975
Psp6I	CCWGG	3 cut(s)	347, 651, 991
PspFI	CCCAGC	2 cut(s)	410, 521
PspGI	CCWGG	3 cut(s)	347, 651, 991
PspN4I	GGNNCC	2 cut(s)	40, 358
PspPI	GGNCC	1 cut(s)	1224
PspXI	VCTCGAGB	1 cut(s)	1198
PstI	CTGCAG	1 cut(s)	466
PstNI	CAGNNNCTG	1 cut(s)	683
PvuII	CAGCTG	2 cut(s)	467, 525
RsaI	GTAC	2 cut(s)	106, 427
RsaNI	GTAC	2 cut(s)	105, 426
RseI	CAYNNNNRTG	2 cut(s)	504, 1003
SaqAI	TTAA	3 cut(s)	162, 1145, 1169
SatI	GCNGC	2 cut(s)	462, 465
Sau3AI	GATC	2 cut(s)	439, 715
Sau96I	GGNCC	1 cut(s)	1224
ScaI	AGTACT	1 cut(s)	427
SchI	GAGTC	1 cut(s)	1190
ScrFI	CCNGG	5 cut(s)	287, 288, 349, 653, 993
SduI	GDGCHC	3 cut(s)	178, 806, 1095
SfaNI	GCATC	2 cut(s)	134, 553
SfcI	CTRYAG	1 cut(s)	462
Sfr274I	CTCGAG	1 cut(s)	1198
SfuI	TTCGAA	1 cut(s)	742
SlaI	CTCGAG	1 cut(s)	1198
SmaI	CCCGGG	1 cut(s)	288
SmiMI	CAYNNNNRTG	2 cut(s)	504, 1003
SmlI	CTYRAG	2 cut(s)	608, 1198
SmoI	CTYRAG	2 cut(s)	608, 1198
SpeI	ACTAGT	1 cut(s)	962
Sse9I	AATT	8 cut(s)	23, 205, 291, 472, 745, 879, 912, 1010
SseBI	AGGCCT	1 cut(s)	1036
SsiI	CCGC	1 cut(s)	688
SspMI	CTAG	4 cut(s)	420, 429, 963, 1237
StuI	AGGCCT	1 cut(s)	1036
StyD4I	CCNGG	5 cut(s)	285, 286, 347, 651, 991
StyI	CCWWGG	2 cut(s)	34, 360
TaaI	ACNGT	2 cut(s)	679, 985
TaiI	ACGT	2 cut(s)	661, 1048
TaqI	TCGA	6 cut(s)	142, 742, 930, 1048, 1089, 1199
TasI	AATT	8 cut(s)	23, 205, 291, 472, 745, 879, 912, 1010
TatI	WGTACW	1 cut(s)	425
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	3 cut(s)	162, 1145, 1169
Tru9I	TTAA	3 cut(s)	162, 1145, 1169
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	3 cut(s)	389, 415, 1193
TseI	GCWGC	2 cut(s)	461, 464
Tsp45I	GTSAC	3 cut(s)	389, 415, 1193
TspDTI	ATGAA	7 cut(s)	168, 186, 444, 494, 593, 1070, 1152
TspMI	CCCGGG	1 cut(s)	286
TspRI	CASTG	1 cut(s)	649
Van91I	CCANNNNNTGG	1 cut(s)	770
XapI	RAATTY	4 cut(s)	23, 205, 291, 1010
XceI	RCATGY	2 cut(s)	161, 588
XcmI	CCANNNNNNNNNTGG	1 cut(s)	846
XhoI	CTCGAG	1 cut(s)	1198
XmaI	CCCGGG	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	295
XspI	CTAG	4 cut(s)	420, 429, 963, 1237
ZrmI	AGTACT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.