Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009491

Physical Location & Seq

Genomic Coordinates Forward (+)

24135652 .. 24138992

Gene Structure 3341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26320.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTCCAAAAGGGTTCTCTGCAAGTTTTTTGCACATGGCGCGTGTTTGAAAGGGGAGCATTGCGAGTTTTCACATGATTGGAAGGCTTCACCAAATAATATATGTACCTTTTATCAGAAAGGAGCTTGTGCATTTGGTAGCCGATGCAGATATGAACATGTCAAAGCTTCTCAGGCTCAGTCTTCAGGCTCATCTTCATCAACAAATTCTCAGCCATCCCTTGCTATTGATTCTGCATCTCTGGCACTTCCTGTGAGAACCTTAGCAAGCAGATTTTCTCTTGCACCCCTCTCCCTTTCAGAACTCTCTGCTTCAAGTAGCCCTTTCTTACCTCCCTCTAAACCTGACTGGAATGGTTCTCTGGAGGATGACTATGATAATGATGAAAGTAATGTTGGGGAGACTAGGAGTACTAGACCAGAAGATCGTTCTATTTGTCCATTTGCTGCAGCTGGTAATTGTCCTCGTGGAGAAAAATGTCCTCATATTCATGGAGATTTATGCCCCAGCTGTGGAAAACATTGCTTGCATCCTTACAGACCTTTGGAAAGGGGGGAGCATATGAAAACATGTGAGGATAAGCAGAAGCAACTTGAGGCTTTGAAACGTAGTCAAGAAATAGAATGCAGTGTTTGCCTAGAACGTGTTTTGTCAAAGCCCACAGTTGCTGAACGCAAGTTTGGGATACTCTCAGAATGTGATCATCCATTTTGCATATCTTGTATTAGAAATTGGCGTAGCAGTTCCCCAACTTCTGGTATGGATGTCAATAGCGCTTTGAGAGCTTGCCCAATATGTCGGAAGCTGTCGTACTTTGTCATTCCAAGTGTCATTTGGTATAACTCAAAAGAAGAGAAACAGGAAATTGTTGAGAGCTACAAGGCAAGGCTCAGGTCAATTGATTGCAAGCACTTCGATTTTGGAAATGGGAACTGCCCATTTGGAACTAGTTGTTTTTATAAGCTTGAGCTCAAACACAACCTAAACACTTGGGTGGAATTTTCAAATGGCTTACTCTATTCACAGGCCACCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-CCCH zf-RING_2

Protein Analysis

346

Amino Acids

38.45

Weight (kDa)

8.13

Isoelectric Point (pI)

64.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08505 AT3G08505 AT3G08505
fragaria_vesca	FvH4_7g00890 FvH4_7g00890 FvH4_7g00890
malus_domestica	MD02G1313900.v1.1 MD07G1008500.v1.1
prunus_persica	Prupe.2G011700_v2.0.a1 Prupe.2G011700_v2.0.a1
pyrus_communis	pycom02g26320 pycom07g00730
rosa_chinensis	RchiOBHm_Chr1g0315781
rosa_laevigata	RLG00000030733
rosa_multiflora	Rmu_sc0009816.1_g000006
rosa_roxburghii	Rroxscaffold_4G00331440
rosa_rugosa	Rorug01G0005500
rosa_samantha	Rh1AG016400 Rh1BG008800 Rh1CG013700 Rh1DG009500
rosa_wichuraiana	Rw1G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	960
AccB7I	CCANNNNNTGG	1 cut(s)	755
AccII	CGCG	1 cut(s)	41
AcsI	RAATTY	2 cut(s)	205, 998
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	3 cut(s)	106, 412, 812
AfeI	AGCGCT	1 cut(s)	775
AfiI	CCNNNNNNNGG	2 cut(s)	512, 755
AflIII	ACRYGT	3 cut(s)	157, 569, 643
AgsI	TTSAA	4 cut(s)	49, 315, 604, 1005
AhlI	ACTAGT	1 cut(s)	947
AjuI	GAANNNNNNNTTGG	4 cut(s)	378, 410, 663, 695
AleI	CACNNNNGTG	1 cut(s)	992
AluBI	AGCT	9 cut(s)	125, 167, 452, 510, 785, 805, 876, 964, 970
AluI	AGCT	9 cut(s)	125, 167, 452, 510, 785, 805, 876, 964, 970
Alw21I	GWGCWC	1 cut(s)	972
Alw26I	GTCTC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	668
Aor51HI	AGCGCT	1 cut(s)	775
AoxI	GGCC	1 cut(s)	1026
ApeKI	GCWGC	2 cut(s)	446, 449
ApoI	RAATTY	2 cut(s)	205, 998
AspLEI	GCGC	2 cut(s)	41, 776
AsuHPI	GGTGA	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	972
BarI	GAAGNNNNNNTAC	2 cut(s)	794, 826
BauI	CACGAG	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	972
BbvI	GCAGC	2 cut(s)	433, 461
BccI	CCATC	1 cut(s)	223
BcgI	CGANNNNNNTGC	2 cut(s)	895, 929
BciVI	GTATCC	1 cut(s)	678
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	395
BcuI	ACTAGT	1 cut(s)	947
BfaI	CTAG	5 cut(s)	405, 414, 638, 948, 1036
BfmI	CTRYAG	1 cut(s)	447
BfoI	RGCGCY	1 cut(s)	777
BfuI	GTATCC	1 cut(s)	678
BisI	GCNGC	2 cut(s)	447, 450
BlsI	GCNGC	2 cut(s)	448, 451
BmcAI	AGTACT	1 cut(s)	412
BmsI	GCATC	3 cut(s)	134, 245, 538
BpiI	GAAGAC	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	383
Bpu10I	CCTNAGC	2 cut(s)	262, 890
BpuEI	CTTGAG	2 cut(s)	614, 986
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 755
Bse1I	ACTGG	1 cut(s)	353
Bse3DI	GCAATG	2 cut(s)	58, 520
BseGI	GGATG	5 cut(s)	215, 373, 529, 703, 769
BseLI	CCNNNNNNNGG	2 cut(s)	512, 755
BseMI	GCAATG	2 cut(s)	58, 520
BseMII	CTCAG	5 cut(s)	185, 191, 224, 705, 904
BseNI	ACTGG	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	433, 461
BseYI	CCCAGC	1 cut(s)	506
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	1028
BsiHKAI	GWGCWC	1 cut(s)	972
BslI	CCNNNNNNNGG	2 cut(s)	512, 755
BsmAI	GTCTC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	1 cut(s)	1028
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp143I	GATC	2 cut(s)	424, 700
BspANI	GGCC	1 cut(s)	1028
BspCNI	CTCAG	5 cut(s)	184, 190, 223, 704, 903
BspFNI	CGCG	1 cut(s)	41
BspMAI	CTGCAG	1 cut(s)	451
BsrDI	GCAATG	2 cut(s)	58, 520
BsrI	ACTGG	1 cut(s)	353
BssMI	GATC	2 cut(s)	424, 700
BssSI	CACGAG	1 cut(s)	465
Bst2BI	CACGAG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	664
Bst6I	CTCTTC	1 cut(s)	846
BstAPI	GCANNNNNTGC	1 cut(s)	633
BstC8I	GCNNGC	4 cut(s)	268, 527, 787, 908
BstDEI	CTNAG	6 cut(s)	171, 177, 210, 262, 691, 890
BstF5I	GGATG	5 cut(s)	215, 373, 529, 703, 769
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	777
BstHHI	GCGC	2 cut(s)	41, 776
BstKTI	GATC	2 cut(s)	427, 703
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	2 cut(s)	424, 700
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 173, 242, 633, 782
BstNSI	RCATGY	2 cut(s)	161, 573
BstSFI	CTRYAG	1 cut(s)	447
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	433, 461
BstV2I	GAAGAC	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	678
BsuRI	GGCC	1 cut(s)	1028
BtsCI	GGATG	5 cut(s)	215, 373, 529, 703, 769
BtsI	GCAGTG	1 cut(s)	634
BtsIMutI	CAGTG	1 cut(s)	634
Cac8I	GCNNGC	4 cut(s)	268, 527, 787, 908
CaiI	CAGNNNCTG	1 cut(s)	668
CfoI	GCGC	2 cut(s)	41, 776
Csp6I	GTAC	3 cut(s)	105, 411, 811
CviAII	CATG	5 cut(s)	35, 74, 158, 491, 570
CviQI	GTAC	3 cut(s)	105, 411, 811
DdeI	CTNAG	6 cut(s)	171, 177, 210, 262, 691, 890
DpnI	GATC	2 cut(s)	426, 702
DpnII	GATC	2 cut(s)	424, 700
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
Ecl136II	GAGCTC	1 cut(s)	970
Eco24I	GRGCYC	1 cut(s)	972
Eco47III	AGCGCT	1 cut(s)	775
Eco53kI	GAGCTC	1 cut(s)	970
Eco57I	CTGAAG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	970
EcoT38I	GRGCYC	1 cut(s)	972
FaeI	CATG	5 cut(s)	38, 77, 161, 494, 573
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FatI	CATG	5 cut(s)	34, 73, 157, 490, 569
FauNDI	CATATG	1 cut(s)	561
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	2 cut(s)	447, 450
FokI	GGATG	5 cut(s)	202, 380, 516, 690, 776
FriOI	GRGCYC	1 cut(s)	972
Fsp4HI	GCNGC	2 cut(s)	447, 450
FspBI	CTAG	5 cut(s)	405, 414, 638, 948, 1036
GlaI	GCGC	2 cut(s)	40, 775
GluI	GCNGC	2 cut(s)	447, 450
GsaI	CCCAGC	1 cut(s)	510
GsuI	CTGGAG	1 cut(s)	383
HaeII	RGCGCY	1 cut(s)	777
HaeIII	GGCC	1 cut(s)	1028
HhaI	GCGC	2 cut(s)	41, 776
Hin1II	CATG	5 cut(s)	38, 77, 161, 494, 573
Hin6I	GCGC	2 cut(s)	39, 774
HinP1I	GCGC	2 cut(s)	39, 774
HindIII	AAGCTT	2 cut(s)	165, 962
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	1 cut(s)	81
Hpy188I	TCNGA	4 cut(s)	117, 301, 694, 801
Hpy188III	TCNNGA	2 cut(s)	362, 614
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	664
HpyCH4IV	ACGT	2 cut(s)	607, 643
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 173, 242, 633, 782
HpyF3I	CTNAG	6 cut(s)	171, 177, 210, 262, 691, 890
HpySE526I	ACGT	2 cut(s)	607, 643
Hsp92II	CATG	5 cut(s)	38, 77, 161, 494, 573
HspAI	GCGC	2 cut(s)	39, 774
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	2 cut(s)	424, 700
LmnI	GCTCC	3 cut(s)	55, 122, 556
Lsp1109I	GCAGC	2 cut(s)	433, 461
LweI	GCATC	3 cut(s)	134, 245, 538
MaeI	CTAG	5 cut(s)	405, 414, 638, 948, 1036
MaeII	ACGT	2 cut(s)	607, 643
MalI	GATC	2 cut(s)	426, 702
MboI	GATC	2 cut(s)	424, 700
MboII	GAAGA	4 cut(s)	174, 186, 434, 863
MfeI	CAATTG	1 cut(s)	897
MhlI	GDGCHC	1 cut(s)	972
MluCI	AATT	6 cut(s)	205, 457, 730, 864, 897, 998
MmeI	TCCRAC	1 cut(s)	779
MnlI	CCTC	8 cut(s)	299, 342, 346, 358, 474, 492, 568, 589
MslI	CAYNNNNRTG	2 cut(s)	489, 992
MspA1I	CMGCKG	2 cut(s)	452, 510
MunI	CAATTG	1 cut(s)	897
Mva1269I	GAATGC	1 cut(s)	629
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	5 cut(s)	38, 173, 242, 633, 782
NdeI	CATATG	1 cut(s)	561
NdeII	GATC	2 cut(s)	424, 700
NlaIII	CATG	5 cut(s)	38, 77, 161, 494, 573
NspI	RCATGY	2 cut(s)	161, 573
OliI	CACNNNNGTG	1 cut(s)	992
PciI	ACATGT	2 cut(s)	157, 569
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	755
PkrI	GCNGC	2 cut(s)	448, 451
PscI	ACATGT	2 cut(s)	157, 569
PsiI	TTATAA	1 cut(s)	960
Psp124BI	GAGCTC	1 cut(s)	972
PspFI	CCCAGC	1 cut(s)	506
PstI	CTGCAG	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	668
PvuII	CAGCTG	2 cut(s)	452, 510
RsaI	GTAC	3 cut(s)	106, 412, 812
RsaNI	GTAC	3 cut(s)	105, 411, 811
RseI	CAYNNNNRTG	2 cut(s)	489, 992
SacI	GAGCTC	1 cut(s)	972
SatI	GCNGC	2 cut(s)	447, 450
Sau3AI	GATC	2 cut(s)	424, 700
ScaI	AGTACT	1 cut(s)	412
SduI	GDGCHC	1 cut(s)	972
SfaNI	GCATC	3 cut(s)	134, 245, 538
SfcI	CTRYAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	2 cut(s)	489, 992
SmlI	CTYRAG	2 cut(s)	593, 965
SmoI	CTYRAG	2 cut(s)	593, 965
SpeI	ACTAGT	1 cut(s)	947
Sse9I	AATT	6 cut(s)	205, 457, 730, 864, 897, 998
SspMI	CTAG	5 cut(s)	405, 414, 638, 948, 1036
SstI	GAGCTC	1 cut(s)	972
TaaI	ACNGT	1 cut(s)	664
TaiI	ACGT	2 cut(s)	610, 646
TaqI	TCGA	1 cut(s)	915
TasI	AATT	6 cut(s)	205, 457, 730, 864, 897, 998
TatI	WGTACW	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	230
TscAI	CASTG	1 cut(s)	634
TseI	GCWGC	2 cut(s)	446, 449
TspDTI	ATGAA	5 cut(s)	168, 186, 399, 479, 578
TspRI	CASTG	1 cut(s)	634
Van91I	CCANNNNNTGG	1 cut(s)	755
XapI	RAATTY	2 cut(s)	205, 998
XceI	RCATGY	2 cut(s)	161, 573
XcmI	CCANNNNNNNNNTGG	1 cut(s)	831
XspI	CTAG	5 cut(s)	405, 414, 638, 948, 1036
ZrmI	AGTACT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.