Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009491

Physical Location & Seq

Genomic Coordinates Reverse (-)

2799495 .. 2806202

Gene Structure 6708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG016400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCCAAAAGGGTTCTTTGCAAGTTCTTTGCCCATGGAGCCTGTTTAAAAGGGGAGCACTGCGAGTTTTCACATGATTGGAAGGATCCATCAAATAATATATGTACCTTTTATCAGAAAGGAGCTTGTGCCTTTGGTAGTCGATGCAGATATGAACATGTTAAAGGTTCTCGGGCTCAGTCATCTGGTTCGTCTTCATCAGCAAATTCTCATCAATCTCTGGCTTTTGATTCTGCTCTTGCTCATCCCTCAAGAACTGCATCAAGTGGAGTTGCTTTAGTCCCGGGCACTCTTTCTGAGCTCTCTGCATTTAGTAGTCCTTTCTTACCTCCCCCTAAACCTGCATGGAGTGATTCTCTGGATGATGGTGATTTTGATCACAATGAGGATGATGATGTGGGGGAGACTAGAAGTGCTAGACCAGCCGATCGTGCTATCTGTTCGTTTGCTGCAGCTGGAAATTGTCCTCGTGGAGAAAATTGTCCTCATATTCATGGAGATATTTGCCCCAGTTGTGGAAAACATTGTTTGCATCCTTACAGACCTGTGGAAAGAGAGGAGCATATGAGGACGTGCGAGGAAAAGCACAAGCAACTTGAGGCATTAAAGCGTAGTCAAGAAATAGAATGCAGTGTTTGCCTGGAACGTGTTCTTTCAAAGCCTACAGTTGCTGAACGAAAGTTTGGGATACTCTCAGAATGTGATCACCCTTTTTGCATATCTTGTATTCGAAACTGGCGCAGTAGCTCCCCAACTTCTGGTATGGATGTGAATAGTGCGTTGAGAGCTTGCCCAATATGTCGGAAGCTGTCATACTTTGTGATTCCAAGTGTCATATGGTATAACACAAAAGAAGAGAAAGAGGAAATTGTTGACAGCTACAAGGCTCGCCTCAGTTCGATTGATTGCAAGCACTTTGATTTTGGAAATGGGAACTGCCCATTTGGGACAAGCTGTTTTTATAAGGTAATTTTTTGTTGCTTCTGGAAATATGCTACTGCCATTGTCATTCATATTTGTTTGTTTTCTGTTGCATTGAGAGCCAGTTTCTGTGTCATGACTCATGATGAGATTGACAAGTATGTGATGGTCTGTACACTTGCTGATGTGGTTAATCTTTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-CCCH zf-RING_2

Protein Analysis

375

Amino Acids

41.76

Weight (kDa)

6.79

Isoelectric Point (pI)

59.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_3	PF15663	6 - 60	4.2e-06	Zinc-finger containing family
zf-CCCH_4	PF18044	34 - 53	1e-06	CCCH-type zinc finger
zf-RING_2	PF13639	209 - 268	1.5e-06	Ring finger domain
zf-C3HC4	PF00097	210 - 267	2.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08505 AT3G08505 AT3G08505
fragaria_vesca	FvH4_7g00890 FvH4_7g00890 FvH4_7g00890
malus_domestica	MD02G1313900.v1.1 MD07G1008500.v1.1
prunus_persica	Prupe.2G011700_v2.0.a1 Prupe.2G011700_v2.0.a1
pyrus_communis	pycom02g26320 pycom07g00730
rosa_chinensis	RchiOBHm_Chr1g0315781
rosa_laevigata	RLG00000030733
rosa_multiflora	Rmu_sc0009816.1_g000006
rosa_roxburghii	Rroxscaffold_4G00331440
rosa_rugosa	Rorug01G0005500
rosa_samantha	Rh1AG016400 Rh1BG008800 Rh1CG013700 Rh1DG009500
rosa_wichuraiana	Rw1G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	963
Acc36I	ACCTGC	1 cut(s)	349
AccB7I	CCANNNNNTGG	1 cut(s)	758
AclWI	GGATC	2 cut(s)	80, 93
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	205
AfaI	GTAC	2 cut(s)	106, 1096
AfiI	CCNNNNNNNGG	2 cut(s)	515, 758
AflIII	ACRYGT	2 cut(s)	157, 646
AgsI	TTSAA	1 cut(s)	657
AjiI	CACGTC	1 cut(s)	573
AjnI	CCWGG	1 cut(s)	639
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AluBI	AGCT	8 cut(s)	125, 301, 455, 747, 788, 808, 879, 954
AluI	AGCT	8 cut(s)	125, 301, 455, 747, 788, 808, 879, 954
Alw21I	GWGCWC	2 cut(s)	60, 303
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	80, 93
AlwNI	CAGNNNCTG	2 cut(s)	671, 1050
Ama87I	CYCGRG	2 cut(s)	171, 283
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	449, 452
ApoI	RAATTY	1 cut(s)	205
Asp700I	GAANNNNTTC	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	741
AsuC2I	CCSGG	2 cut(s)	284, 285
AsuHPI	GGTGA	2 cut(s)	380, 698
AsuII	TTCGAA	1 cut(s)	730
AvaI	CYCGRG	2 cut(s)	171, 283
BaeGI	GKGCMC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	85
BanII	GRGCYC	2 cut(s)	178, 303
BarI	GAAGNNNNNNTAC	2 cut(s)	797, 829
BauI	CACGAG	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	2 cut(s)	60, 303
BbvI	GCAGC	2 cut(s)	436, 464
BccI	CCATC	3 cut(s)	97, 359, 1081
BciT130I	CCWGG	1 cut(s)	641
BciVI	GTATCC	1 cut(s)	681
BclI	TGATCA	2 cut(s)	376, 703
BcnI	CCSGG	2 cut(s)	284, 285
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	408, 417
BfmI	CTRYAG	2 cut(s)	450, 663
BfuAI	ACCTGC	1 cut(s)	349
BfuI	GTATCC	1 cut(s)	681
BisI	GCNGC	2 cut(s)	450, 453
BlsI	GCNGC	2 cut(s)	451, 454
Bme1390I	CCNGG	3 cut(s)	284, 285, 641
BmeT110I	CYCGRG	2 cut(s)	171, 283
BmgBI	CACGTC	1 cut(s)	573
BmiI	GGNNCC	2 cut(s)	40, 87
BmrFI	CCNGG	3 cut(s)	284, 285, 641
BmrI	ACTGGG	1 cut(s)	504
BmsI	GCATC	3 cut(s)	134, 269, 541
BmuI	ACTGGG	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	186
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
Bpu14I	TTCGAA	1 cut(s)	730
BpuEI	CTTGAG	2 cut(s)	235, 617
BpuMI	CCSGG	2 cut(s)	284, 285
BsaBI	GATNNNNATC	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	34, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	515, 758
Bse1I	ACTGG	3 cut(s)	510, 740, 1044
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	641
BseDI	CCNNGG	2 cut(s)	34, 283
BseGI	GGATG	5 cut(s)	244, 367, 394, 532, 772
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	2 cut(s)	515, 758
BseMII	CTCAG	4 cut(s)	191, 288, 708, 907
BseNI	ACTGG	3 cut(s)	510, 740, 1044
BseRI	GAGGAG	1 cut(s)	572
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	436, 464
Bsh1285I	CGRYCG	1 cut(s)	430
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	430
BsiHKAI	GWGCWC	2 cut(s)	60, 303
BsiHKCI	CYCGRG	2 cut(s)	171, 283
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	2 cut(s)	266, 961
BslI	CCNNNNNNNGG	2 cut(s)	515, 758
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	2 cut(s)	266, 961
BsmI	GAATGC	1 cut(s)	632
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	171, 283
Bsp119I	TTCGAA	1 cut(s)	730
Bsp1286I	GDGCHC	4 cut(s)	60, 178, 290, 303
Bsp1407I	TGTACA	1 cut(s)	1094
Bsp143I	GATC	4 cut(s)	85, 376, 427, 703
Bsp19I	CCATGG	1 cut(s)	34
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	190, 289, 707, 906
BspHI	TCATGA	2 cut(s)	1056, 1063
BspLI	GGNNCC	2 cut(s)	40, 87
BspMAI	CTGCAG	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	80, 93
BspT104I	TTCGAA	1 cut(s)	730
BsrGI	TGTACA	1 cut(s)	1094
BsrI	ACTGG	3 cut(s)	510, 740, 1044
BssECI	CCNNGG	2 cut(s)	34, 283
BssMI	GATC	4 cut(s)	85, 376, 427, 703
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	641
Bst4CI	ACNGT	1 cut(s)	667
Bst6I	CTCTTC	1 cut(s)	849
BstAPI	GCANNNNNTGC	1 cut(s)	636
BstAUI	TGTACA	1 cut(s)	1094
BstBI	TTCGAA	1 cut(s)	730
BstC8I	GCNNGC	3 cut(s)	790, 889, 911
BstDEI	CTNAG	4 cut(s)	177, 297, 694, 893
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	5 cut(s)	244, 367, 394, 532, 772
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	4 cut(s)	88, 379, 430, 706
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	4 cut(s)	85, 376, 427, 703
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 422, 431, 636, 785, 1040
BstNI	CCWGG	1 cut(s)	641
BstNSI	RCATGY	1 cut(s)	161
BstSCI	CCNGG	3 cut(s)	282, 283, 639
BstSFI	CTRYAG	2 cut(s)	450, 663
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	436, 464
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	681
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	573
BtsCI	GGATG	5 cut(s)	244, 367, 394, 532, 772
BtsI	GCAGTG	2 cut(s)	58, 637
BtsIMutI	CAGTG	2 cut(s)	58, 637
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	3 cut(s)	790, 889, 911
CaiI	CAGNNNCTG	2 cut(s)	671, 1050
CciI	TCATGA	2 cut(s)	1056, 1063
CfoI	GCGC	1 cut(s)	741
Cfr9I	CCCGGG	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	105, 1095
CviAII	CATG	7 cut(s)	35, 74, 158, 345, 494, 1057, 1064
CviQI	GTAC	2 cut(s)	105, 1095
DdeI	CTNAG	4 cut(s)	177, 297, 694, 893
DpnI	GATC	4 cut(s)	87, 378, 429, 705
DpnII	GATC	4 cut(s)	85, 376, 427, 703
DraI	TTTAAA	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	34
Eco24I	GRGCYC	2 cut(s)	178, 303
Eco53kI	GAGCTC	1 cut(s)	301
Eco88I	CYCGRG	2 cut(s)	171, 283
EcoICRI	GAGCTC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	639
EcoT14I	CCWWGG	1 cut(s)	34
EcoT38I	GRGCYC	2 cut(s)	178, 303
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	7 cut(s)	38, 77, 161, 348, 497, 1060, 1067
FaqI	GGGAC	2 cut(s)	266, 961
FatI	CATG	7 cut(s)	34, 73, 157, 344, 493, 1056, 1063
FauNDI	CATATG	2 cut(s)	564, 836
FbaI	TGATCA	2 cut(s)	376, 703
Fnu4HI	GCNGC	2 cut(s)	450, 453
FokI	GGATG	5 cut(s)	231, 374, 401, 519, 779
FriOI	GRGCYC	2 cut(s)	178, 303
Fsp4HI	GCNGC	2 cut(s)	450, 453
FspBI	CTAG	2 cut(s)	408, 417
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	2 cut(s)	450, 453
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	284
HhaI	GCGC	1 cut(s)	741
Hin1II	CATG	7 cut(s)	38, 77, 161, 348, 497, 1060, 1067
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HinfI	GANTC	4 cut(s)	230, 353, 823, 1060
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	2 cut(s)	380, 698
Hpy166II	GTNNAC	2 cut(s)	874, 1097
Hpy188I	TCNGA	4 cut(s)	117, 298, 697, 804
Hpy188III	TCNNGA	6 cut(s)	252, 359, 617, 985, 1057, 1064
Hpy8I	GTNNAC	2 cut(s)	874, 1097
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	667
HpyCH4IV	ACGT	2 cut(s)	572, 646
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 422, 431, 636, 785, 1040
HpyF3I	CTNAG	4 cut(s)	177, 297, 694, 893
HpySE526I	ACGT	2 cut(s)	572, 646
Hsp92II	CATG	7 cut(s)	38, 77, 161, 348, 497, 1060, 1067
HspAI	GCGC	1 cut(s)	739
Ksp22I	TGATCA	2 cut(s)	376, 703
Kzo9I	GATC	4 cut(s)	85, 376, 427, 703
LmnI	GCTCC	5 cut(s)	38, 55, 122, 559, 752
Lsp1109I	GCAGC	2 cut(s)	436, 464
LweI	GCATC	3 cut(s)	134, 269, 541
MaeI	CTAG	2 cut(s)	408, 417
MaeII	ACGT	2 cut(s)	572, 646
MalI	GATC	4 cut(s)	87, 378, 429, 705
MboI	GATC	4 cut(s)	85, 376, 427, 703
MboII	GAAGA	2 cut(s)	186, 866
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	4 cut(s)	60, 178, 290, 303
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	205, 460, 478, 867, 969
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	1054
MmeI	TCCRAC	1 cut(s)	782
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	648
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	47, 162, 605, 1113
MslI	CAYNNNNRTG	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	3 cut(s)	284, 285, 641
Mva1269I	GAATGC	1 cut(s)	632
MvaI	CCWGG	1 cut(s)	641
MwoI	GCNNNNNNNGC	6 cut(s)	38, 422, 431, 636, 785, 1040
NciI	CCSGG	2 cut(s)	284, 285
NcoI	CCATGG	1 cut(s)	34
NdeI	CATATG	2 cut(s)	564, 836
NdeII	GATC	4 cut(s)	85, 376, 427, 703
NlaIII	CATG	7 cut(s)	38, 77, 161, 348, 497, 1060, 1067
NlaIV	GGNNCC	2 cut(s)	40, 87
NspI	RCATGY	1 cut(s)	161
NspV	TTCGAA	1 cut(s)	730
PagI	TCATGA	2 cut(s)	1056, 1063
PciI	ACATGT	1 cut(s)	157
PctI	GAATGC	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	3 cut(s)	230, 353, 823
PflMI	CCANNNNNTGG	1 cut(s)	758
PkrI	GCNGC	2 cut(s)	451, 454
Ple19I	CGATCG	1 cut(s)	430
PleI	GAGTC	1 cut(s)	1054
PpsI	GAGTC	1 cut(s)	1054
PscI	ACATGT	1 cut(s)	157
PsiI	TTATAA	1 cut(s)	963
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	639
PspN4I	GGNNCC	2 cut(s)	40, 87
PstI	CTGCAG	1 cut(s)	454
PstNI	CAGNNNCTG	2 cut(s)	671, 1050
PsuI	RGATCY	1 cut(s)	85
PvuI	CGATCG	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	2 cut(s)	106, 1096
RsaNI	GTAC	2 cut(s)	105, 1095
RseI	CAYNNNNRTG	1 cut(s)	492
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	4 cut(s)	47, 162, 605, 1113
SatI	GCNGC	2 cut(s)	450, 453
Sau3AI	GATC	4 cut(s)	85, 376, 427, 703
SchI	GAGTC	1 cut(s)	1054
ScrFI	CCNGG	3 cut(s)	284, 285, 641
SduI	GDGCHC	4 cut(s)	60, 178, 290, 303
SfaNI	GCATC	3 cut(s)	134, 269, 541
SfcI	CTRYAG	2 cut(s)	450, 663
SfuI	TTCGAA	1 cut(s)	730
SmaI	CCCGGG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	2 cut(s)	250, 596
SmoI	CTYRAG	2 cut(s)	250, 596
Sse9I	AATT	5 cut(s)	205, 460, 478, 867, 969
SspMI	CTAG	2 cut(s)	408, 417
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	282, 283, 639
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	667
TaiI	ACGT	2 cut(s)	575, 649
TaqI	TCGA	3 cut(s)	142, 730, 899
TasI	AATT	5 cut(s)	205, 460, 478, 867, 969
TatI	WGTACW	1 cut(s)	1094
TfiI	GAWTC	3 cut(s)	230, 353, 823
Tru1I	TTAA	4 cut(s)	47, 162, 605, 1113
Tru9I	TTAA	4 cut(s)	47, 162, 605, 1113
TscAI	CASTG	2 cut(s)	65, 637
TseI	GCWGC	2 cut(s)	449, 452
TspDTI	ATGAA	4 cut(s)	168, 186, 482, 1001
TspMI	CCCGGG	1 cut(s)	283
TspRI	CASTG	2 cut(s)	65, 637
Van91I	CCANNNNNTGG	1 cut(s)	758
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	1 cut(s)	161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	834
XmaI	CCCGGG	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	648
XspI	CTAG	2 cut(s)	408, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.